Search Results: "will"

15 December 2011

Dirk Eddelbuettel: R / Finance 2012 Call for Papers

Last night, the text below went out to r-sig-finance along with updates to the R/Finance website and its Call for Papers page; followed by some tweeting and Goggle+'ing (and please do feel free to retweet and share at will...)
Call for Papers: R/Finance 2012: Applied Finance with R
May 11 and 12, 2012
University of Illinois, Chicago, IL, USA
The fourth annual R/Finance conference for applied finance using R will be held on May 11 and 12, 2012 in Chicago, IL, USA on the campus of the University of Illinois at Chicago. The two-day conference will cover topics including portfolio management, time series analysis, advanced risk tools, high-performance computing, market microstructure, and econometrics. All will be discussed within the context of using R as a primary tool for financial risk management, portfolio construction, and trading. Over the past three years, R/Finance has included attendees from around the world and featured keynote presentations from prominent academics and practitioners. We anticipate another exciting line-up for 2012 --- including keynote presentations from Blair Hull, Paul Gilbert, Rob McCulloch, and Simon Urbanek. We invite you to submit complete papers or one-page abstracts (in txt or pdf format) for consideration. Academic and practitioner proposals related to R are encouraged. We welcome submissions for full talks, abbreviated "lightning talks", and for a limited number of (longer) pre-conference seminar sessions. Presenters are strongly encouraged to provide working R code to accompany the presentation/paper. Data sets should also be made public for the purposes of reproducibility (though we realize this may be limited due to contracts with data vendors). Preference may be given to presenters who have released R packages. Travel and accommodation grants may be available for selected presenters at the discretion of the committee. In addition, the conference will award prizes for best papers. To be eligible for a best paper award, a submission must be a full paper. Extended abstracts, even if a full paper by conference time, are not eligible for a best paper award. Please send submissions to: committee at RinFinance.com. The submission deadline is January 31, 2012. Submitters will be notified of acceptance via email by February 28, 2012. Notification of whether a presentation will be a long presentation or a lightning talk will also be made at that time. Additional details will be announced at this website as they become available. Information on previous year's presenters and their presentations are also at the conference website R/Finance 2009, 2010 and 2011. For the program committee:
Gib Bassett, Peter Carl, Dirk Eddelbuettel, Brian Peterson,
Dale Rosenthal, Jeffrey Ryan, Joshua Ulrich
So see you in Chicago in May! Update: Corrected urls to past conference thanks to heads-up by Josh. Thanks!

Stefano Zacchiroli: debian call for tender by the french government

The French government has published a call for tender for a 2 million euro contract to support Debian and CentOS systems throughout the French public administration. The news is a month old, but the call for bids is open until 9 January 2012. There is more coverage on a EC blog post as well as on Le Monde Informatique (in French). "Customers" of the bid winner will be almost all ministries of the French administration --- from prime minister to justice, from defense to sports, from education to culture --- for a 3-year period. The call requires ability to support most of the "usual suspects" among popular FOSS applications, but explicitly focuses on Debian and CentOS as distributions. It is by far not the first time it has happened, but it is always great for me to see major public administrations choosing community based distros (and Debian in particular :-P ).

14 December 2011

Luke Faraone: Making Message-ID useful in Thunderbird

In Thunderbird, if you read a message on a mailing list and want to reference a post in a blog or elsewhere, you may often want to access a copy of the mailing list posting on the web. While you can often accomplish this by searching for the subject or manually finding it in the specific archives of that list, if you re using full mail headers, there s a built-in way to find a message on the web.Each email or Usenet message has a unique Message-ID. These are indexed at various providers which archive mailing lists, with Gmane being the most notable in the Free Software community.If you right-click on the Message-ID of a message in Thunderbird, you can choose to Open Browser with Message-ID . By default this menu item opens sensible-browser with a Google Groups page, which, while indexing of Usenet, remains ignorant about most mailing lists. Most people reading this will probably find that Gmane carries their favourite mailing lists, while Google does not.This is configurable, but sadly you have to choose one or another. In Thunderbird, go to Edit Preferences Advanced Config Editor, and set the mailnews.messageid_browser.url property to http://mid.gmane.org/%mid. (default of http://groups.google.com/groups?selm=%mid&rnum=1)

Russell Coker: Hetzner Failover Konfiguration

The Wiki documenting how to configure IP failover for Hetzner servers [1] is closely tied to the Linux HA project [2]. This is OK if you want a Heartbeat cluster, but if you want manual failover or an automatic failover from some other form of script then it s not useful. So I ll provide the simplest possible documentation. Below is a sample of shell code to get the current failover settings and change them to point the IP address to a different server. In my tests this takes between 19 and 20 seconds to complete, when the command completes the new server will be active and no IP packets will be lost but TCP connections will be broken if the servers don t support shared TCP state. # username and password for the Hetzner robot
USERPASS=USER:PASS
# public IP
IP=10.1.2.3
# new active server
ACTIVE=10.2.3.4
# get current values
curl -s -u $USERPASS https://robot-ws.your-server.de/failover.yaml/$IP
# change active server
curl -s -u $USERPASS https://robot-ws.your-server.de/failover.yaml/$IP -d active_server_ip=$ACTIVE Below is the output of the above commands showing the old state and the new state. failover:
ip: 10.1.2.3
netmask: 255.255.255.255
server_ip: 10.2.3.3
active_server_ip: 10.2.3.4
failover:
ip: 10.1.2.3
netmask: 255.255.255.255
server_ip: 10.2.3.4
active_server_ip: 10.2.3.4

Leandro Gómez: Hello Planet Debian

I guess I have to do the customary Hello Planet post. I m the team leader of the local DebConf12 team and I ll try to keep you updated on all the cool things that are going on right now with the organization of the thirteenth Debian developer conference that will take place in Managua, Nicaragua, from 1st to 14th of July 2012. We need a lot of help, so if you want to contribute please check out the Jobs and Teams pages on the DebConf wiki. Our next DebConf meeting is TBD on doodle, if you re interested in attending, please go to the doodle poll and select the dates you are available so we can decide a date for the meeting. Hope to see you guys around!

Emanuele Rocca: First steps with Sinatra on Heroku

Lately I have been playing a little bit with different Platform as a Service providers. So far, the most developer-friendly one seems to be Heroku. In particular, Heroku provides an incredibly straightforward way to get started. After creating an account on their website, you just have to install the appropriate gem: sudo gem install heroku The command heroku help will then show you all the possible invocations of the command line client, just to give you an idea of what you can do with it (everything). Alright, that s not particularly interesting without an application to play with, is it? So let s create a new Sinatra application. In order to do that, we need a new directory containing a file like the following one:
# webapp.rb
require 'rubygems'
require 'sinatra'
# Add other gems you might need here
get '/' do
  "Your Sinatra app is working!"
end
Also add a Gemfile with all the required dependencies, in our trivial example sinatra is actually the only gem you need:
source :rubygems
gem "sinatra"
Lastly, you need a config.ru file where you can require our newly created Ruby program and specify that it is a Sinatra application. In this example, the Ruby file is called webapp.rb.
require './webapp'
run Sinatra::Application
A very useful program when developing a Sinatra application is shotgun. gem install shotgun and you will be able to run your new shiny app by executing the command shotgun. While developing on your machine, shotgun will take care of reloading the application for every request, so that you don t have to restart the server after every modification to the source code. Run bundle install to easily install all the required dependencies in your development environment, and shotgun to start the app locally. Pointing your browser to http://127.0.0.1:9393/ you can check if everything works as expected. If nothing went wrong, you can create a git repository to track changes to the source code:
git init
git add . 
git commit -m "Initial commit"
Perfect! Now, how do you create and deploy your application on Heroku?
heroku create
git push heroku master
Heroku will automatically find out that you deployed a Sinatra application, it will install all the required dependencies and start serving requests. A few interesting commands you might want to run to see what s going on are heroku info, heroku ps and heroku logs. The client also provides a command, heroku open, that opens your browser at the right production URL. So, you now have a working application under revision control. Dependencies are handled by specifying them into the Gemfile, and the required gems can be installed locally using bundle. Shotgun is our friend when it comes to use the application for development purposes. A git push heroku master is all we need to deploy a new version of the code. Of course there is way much more about Sinatra and Heroku than what I ve covered in this mini-intro. Please refer to the Sinatra Book and the Heroku Dev Center for more information!

Patrick Schoenfeld: Facebook aggressively advertising dubious features

Yesterday some confusion arised on my side when I saw a new facebook advertising campaign in my facebook account (yes, I am a member of facebook, although I'm aware of the privacy concerns). Basically it was saying that I should try the friends finder and that some of my friends (showing and naming me three of them) would have used it already.

Some background:
The friends finder feature of facebook is a feature that asks for the password of your e-mail account. It will then crawl through your emails to find contacts that might already be on facebook but not connected to you (in a facebook sense).

My first feeling was: Oh my god. How can it be that friends (and family) of mine are so naive? Especially since there were people included which I consider to be quiet clever. But honestly: Who would be so naive to give an unknown company direct unsupervised (you can't tell what they really do) access to your mail account? Would you give it to your friend? Your husband? Your father? I guess the answer will be "No" in the most cases and these people are most likely people you trust. Well, I know, you could state similar things for Googlemail who crawl your mails to show you personalized advertising. And in fact you are right. But if one decides to use gmail for your email hosting you have to trust them anyway. Like you have to trust anybody else you retain to host your mails (who could do the same but just don't tell you). But in this case its a third party, Facebook.

But if you now think that this becomes a rant against my friends: You are wrong. Over the day I found out that it basically shows up all my friends in a rotation. Every time I open the start page it randomly picks three people from my friend list and shows them to me, telling the same lie to me all over again.

So what do we have here? Facebook tries to advertise the most dubious feature they have in the most aggressive way one could imagine. By pretending wrong facts. Wouldn't that even be an element of crime in Germany ("Irref hrung" 5 UWG or maybe also 4 UWG, "unsachliche Beeinflussung")?

Facebook, you can do better.

Update: Stefano raised a good point. I didn't actually make clear that it has been verified that those people actually did not use the "feature":

1. I asked some of them. They said, they didn't use it and were in fact surprised that I asked.
2. Others told me they saw that ad stating that I used the feature. I definitely did not use this "feature".
3. Probably weak: IMHO its highly unlikely that all of my friends used that feature and at the point I've written this it had already shown my whole friend list.

Patrick Schoenfeld: Ubuntu considering critical bugs an "invalid" bug?

I just discovered that bug report over at Ubuntu.
Short summary:
They have a script in upstart which is not meant to be run manually and if you do it will erase your whole file system. Additionally it seems that the fact that you shall not run that script is not communicated anywhere.

That alone isn't the most spectacular about it. Bugs happen. Whats spectacular about it is how a Canonical employee and member of the TechBoard (for people who don't know it: The people who decide about the technical direction Ubuntu takes) handles that bug. One quote of him to reflect it all:
Sorry, the only response here is "Don't Do That Then"

So what we have here is a classical case of bad programming. The problem in question is that the script expects a certain environment variable to be set. Fair enough. However it does not check if its set at all and instead of failing or using a sensible default it simply sticks to undefined behaviour. What we have here is a classical programming mistake every beginner tends to do. People who start programming often forget (or don't know) that every external value we rely on must be considered untrustworthy. Therefore a good practice is to check those values.In this case someone decided that this is useless because they suffer from the wrong assumption that nobody ever calls it manually and the other wrong assumption that caller of the scriptwill always set the environment variable correctly. This is a double-fail.
Now the developer in question does not accept that (someone else indicated why the behaviour of the script is dangerous), he simply says that the bug is invalid. Thats really a pity.

Patrick Schoenfeld: Struggling with Advanced Format during a LVM to RAID migration

Recently I decided to invest in another harddisk for my atom system. That system, I built up almost two years ago, has become the central system in my home network, serving as a fileserver to host my personal data, some git repositories etc., streaming server and since I switched to a cable internet connection it also serves as a router/firewall.Originally, I bought that disk to backup some data, of the systems in the network, but I realized that all data on this system were hosted on a single 320GB 2,5" disk and it became clear to me, that, in absense of a proper backup strategy, I at least should provide some redundancy. So I decided, once the disk was in place, that the whole system should move to a RAID1 over the two disks. Basically this is not that hard as it may seem at a first glance, but I had some problems due to a new sector size in some recent harddisks, which is called Advanced Format. But lets begin from the start. The basic idea of such a migration is:
  1. Install mdadm with apt-get. Make sure to answer 'all' to the question which devices need to be activated in order to boot the system.

  2. Partition the new disk (almost) identical.Because the new drive is somewhat bigger that wouldn't make sense, but at least the two partitions which should be mirrored on the second disk, need to be identical.Usually this is achieved easily by using
    sfdisk -d /dev/sda sfdisk /dev/second/sdb
    In this case, it wasn't that easy. But I will come to that in a minute.

  3. Change the type of the partitions to 'FD' (Linux RAID autodetect) with fdisk

  4. Erase evidence of an eventual old RAID from the partitions, which is probably pointless on a brand-new disk, but we want to be sure:
    mdadm --zero-superblock /dev/sdb1mdadm --zero-superblock /dev/sdb2
  5. Create two DEGRADED raid1 arrays from the partitions:
    mdadm --create /dev/md0 --level=1 --raid-devices=2 /dev/sdb1 missingmdadm --create /dev/md1 --level=1 --raid-devices=2 /dev/sdb2 missing
  6. Create filesystem on the first raid device, which will become /boot.

  7. Mount that filesystem somewhere temporary and move the contents of /boot to it:
    mount /dev/md0 /mnt/somewhere
  8. Unmount /boot, edit fstab to mount /boot from /dev/md0 and re-mount /boot (from md0)

  9. Create mdadm configuration with mdadm and append it to /etc/mdadm/mdadm.conf:
    mdadm --examine --scan >> /etc/mdadm/mdadm.conf
  10. Update the initramfs and grub (no manual modification needed with grub2 on my system)and install grub into the MBR of the second disk.
    update-initramfs -uupdate-grubgrub-install /dev/sdb
  11. The first point to pray: Reboot the system to verify it can boot from the new /boot.

  12. Create a physical volume on /dev/md1:
    pvcreate /dev/md1
  13. Extend the volume group to contain that device:
    vgextend <volgroup_name> /dev/md1</volgroup_name>
  14. Move the whole volume group physically from the first disk to the degraded RAID:
    vgmove <volgroup_name> /dev/md1</volgroup_name>
    (Wait for it to complete... takes some time ;)

  15. Reduce first disk from the VG:
    vgreduce <volgroup_name> /dev/sda2</volgroup_name>
  16. Prepare it for addition to the RAID (see step 3 and 4) and add it:
    mdadm --add /dev/md0 /dev/sda1mdadm --add /dev/md1 /dev/sda2
  17. Hooray! Watch into /proc/mdstat. You should see that the RAID is recovering.

  18. When recovery is finished pray another time and hope that system is still booting with it running from the RAID entirely. If it does: Finished :-)
Now to the problem with the advanced format:There is some action taking place with the hardware vendors to move to a new sector size. Physically my new device has a size of 4096 bytes per sector. Somewhat different to the 512 bytes disks used to have the last decade. Logically it still has 512 bytes per sector. As far as I understand this is achieved by placing 8 logical sectors into one physical sector, so when partitioning a new disk the alignment of the disk has to be so that partitions start in a sector which is a multiple of 8. That, obviously, wasn't the case with the old partitioning on my first disk. So I had to manually create partitions by specifying start points manually and making sure they are dividable by 8.Otherwise fdisk would complain about the layout on the disk.This does not work with cfdisk, because it does not accept manual alignment parameters and unfortunately the partitions it creates do have a wrong alignment. So good old fdisk and some calculations how many sectors are needed and where to start, to the rescue. So the layout is now:

Device Boot Start End Blocks Id System
/dev/sdb1 2048 291154 144553+ fd Linux raid autodetect
/dev/sdb2 291160 625139334 312424087+ fd Linux raid autodetect

Michal &#268;iha&#345;: GePeS internationalisation

After some fight with qmake and lrelease/lupdate, I've finally managed to allow translations in GePeS. I see no clear reason why QML translating is that poorly supported within Qt tools, however with some hacks it seems to be doable. As usual with my software, besides using sources (Qt's translation files in this case), you can use translation server to do online translation. As there are only few words to translate, I hope some languages will be translated soon. Of course to give you good example, I've completed Czech translation immediately :-).

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Dirk Eddelbuettel: R / Finance 2012 Call for Papers

Last night, the text below went out to r-sig-finance along with updates to the R/Finance website and its Call for Papers page; followed by some tweeting and Goggle+'ing (and please do feel free to retweet and share at will...)
Call for Papers: R/Finance 2012: Applied Finance with R
May 11 and 12, 2012
University of Illinois, Chicago, IL, USA
The fourth annual R/Finance conference for applied finance using R will be held on May 11 and 12, 2012 in Chicago, IL, USA on the campus of the University of Illinois at Chicago. The two-day conference will cover topics including portfolio management, time series analysis, advanced risk tools, high-performance computing, market microstructure, and econometrics. All will be discussed within the context of using R as a primary tool for financial risk management, portfolio construction, and trading. Over the past three years, R/Finance has included attendees from around the world and featured keynote presentations from prominent academics and practitioners. We anticipate another exciting line-up for 2012 --- including keynote presentations from Blair Hull, Paul Gilbert, Rob McCulloch, and Simon Urbanek. We invite you to submit complete papers or one-page abstracts (in txt or pdf format) for consideration. Academic and practitioner proposals related to R are encouraged. We welcome submissions for full talks, abbreviated "lightning talks", and for a limited number of (longer) pre-conference seminar sessions. Presenters are strongly encouraged to provide working R code to accompany the presentation/paper. Data sets should also be made public for the purposes of reproducibility (though we realize this may be limited due to contracts with data vendors). Preference may be given to presenters who have released R packages. Travel and accommodation grants may be available for selected presenters at the discretion of the committee. In addition, the conference will award prizes for best papers. To be eligible for a best paper award, a submission must be a full paper. Extended abstracts, even if a full paper by conference time, are not eligible for a best paper award. Please send submissions to: committee at RinFinance.com. The submission deadline is January 31, 2012. Submitters will be notified of acceptance via email by February 28, 2012. Notification of whether a presentation will be a long presentation or a lightning talk will also be made at that time. Additional details will be announced at this website as they become available. Information on previous year's presenters and their presentations are also at the conference website R/Finance 2009, 2010 and 2011. For the program committee:
Gib Bassett, Peter Carl, Dirk Eddelbuettel, Brian Peterson,
Dale Rosenthal, Jeffrey Ryan, Joshua Ulrich
So see you in Chicago in May!

13 December 2011

Bastian Venthur: How to get a list of manually installed packages (and remove the other ones)

The Good Every other year or so I feel the need to clean up my Debian system and remove the installed packages I m not interested in anymore. I remember there was a nice aptitude pattern to search for packages which I have manually installed (i.e. which were not installed to satisfy a dependency). Ideally I would then go through the (presumably short) list of packages and remove the ones I don t need any more. Since I always forget the aptitude pattern to search for those packages, I google for something like list of manually installed packages and find a solution like: aptitude search ~i !~M . Although this solution is not wrong, it is not quite what I was looking for. Sure, it will find you all packages which are installed and not installed to satisfy a dependency, but it also contains packages of priorities: required, important and standard which you usually don t want to deinstall. So the actual solution should also exclude those packages.
aptitude search '~i !~M !~pstandard !~pimportant !~prequired'
The above line will do the trick and present you a list of packages which are: installed and not dragged in to satisfy a dependency and not of priority standard, important or required. If you where only interested in the solution of the quest of getting a list of all manually installed packages you can stop reading here. The Bad If you re running your system for longer than, say, a few weeks you will probably notice that the list is very long and contains much more packages than you actually installed manually. You will probably notice a lot of libs and other packages in this list and wonder why they aren t marked auto as they should since you didn t install them on purpose. Unfortunately I don t have an answer for that question. I m using aptitude exclusively to install packages and rely on the fact that aptitude does install the dependencies automatically and more importantly: also removes them if not needed any more. But it seems like something is broken in aptitude (or somewhere else) and packages simply lose their auto status instead of being removed and thus stay on your system forever if you don t manually clean your system. The Ugly To solve that issue I started aptitude and filtered the package tree with the above pattern (press l in aptitude and enter ~i !~M !~pstandard !~pimportant !~prequired). Now the package view shows only packages which are safe to remove since they are not of of priority standard or higher and manually installed by you. Now I navigate with the cursor to the list of installed packages an mark all of them as auto by pressing M. For each package in this list, aptitude will try to find an installed package which depends on that package and mark that package auto. The remaining packages which no other packages depend on, aptitude will mark for deletion. If you now press g one time, aptitude will show you which packages will be removed. I then go through that list and mark every single of the remaining packages I really want on my system with + as manually installed. After I m done I proceed by pressing g again which will remove all remaining packages. In my case nearly 600 packages (1GB) where removed. Bugreport! I assume there is a bug in aptitude or some related package which sometimes(!) removes a packages auto status instead of removing it. Unfortunately I did not find a way to reproduce that (except that it obviously does happen). If someone could find a way to reproduce that problem, one could fill a bugreport and help to get that bug fixed. Right now, a Debian system suffers (like many other operating systems) from a slow but steadily growing bloat of installed software. In my case 600 packages with 1GB accumulated over one or two years.

Vincent Bernat: Tuning Linux IPv4 route cache

The route cache is a Linux kernel component enabling route lookups to be faster by caching the results in some table and checking it before issuing a regular lookup in the route tables. When using Linux as a router, the inefficiency of the route cache can hinder the performances of your box. The documentation on this component is scarce and it is difficult to find up-to-date bits on how the route cache works and how to tune it. The book Understanding Linux Network Internals from O Reilly is an exception and contains valuable information on how the route cache works. Even if the book is targeted at 2.6.12, the part on the route cache is still quite accurate. Unfortunately, it fails to provide appropriate tips on how to monitor and tune the route cache. I hope to provide here a concise view of the route cache, as it is implemented in Linux 3.1. It is protocol-dependent1 and I will cover only the IPv4 version here.

Overview of the route cache subsystem To handle an incoming or outgoing IP datagram, the kernel needs to issue a lookup in the route tables. While it seems to be quite trivial, several questions need to be answered:
  • Does the source address and the destination address appear to be valid?
  • Is the source address a martian address2?
  • Is the destination address mine or should I forward the packet?
  • Which route table should I use?
  • Does the destination address match this route? And this one?
  • Can I currently contact the gateway that I should use?
Those checks can be a bit time consuming, even for small route tables. To avoid them for each packets, Linux maintains a route cache which is queried before doing a regular lookup and updated after each one. You can dump it with ip -s route show cache:
$ ip -s route show cache
198.51.100.7 from 203.0.113.2 via 192.0.2.1 dev eth1
  cache used 7 age 2sec ipid 0x1fce rtt 131ms rttvar 45ms cwnd 10
198.51.100.17 from 203.0.113.15 via 192.0.2.1 dev eth1
  cache used 3 age 0sec ipid 0xc3bd
local 192.0.2.18 from 203.0.113.15 dev lo src 192.0.2.18
  cache <local> used 154 age 1sec iif eth0
Here are two examples:
  • If Linux receives a packet from 198.51.100.17 to 203.0.113.15, it will find this flow in the route cache. Therefore, it already knows that it should forward the packet to 192.0.2.1. No checks needed.
  • If it receives a packet from 198.51.100.16 to 203.0.113.15, there is no appropriate entry in the route cache and therefore, the system will have to look at the route tables. It is likely to use the exact same entry than if the source was 198.51.100.17 but maybe there is some policy routing requesting the use of a special route table or 198.51.100.16 is a local address and the packet will therefore be classified as martian.
The schema below shows how this cache is implemented3. It uses a separate hash table (BSD systems keep the cache in the routing table). Each bucket is a chained list of route cache entries. Schema of the route cache hash table Once an entry has been added to the route cache, there are several ways to remove it. Most entries are removed by the garbage collector which will scan the route cache and remove invalid and older entries. It will be triggered when the route cache is full or at regular interval, once a certain threshold has been met.

Available knobs There are several values you can tune. Most of them are available in sysctl.
  • rhash_entries is the size of the hash table4. If you don t specify it on the kernel command line, it is computed dynamically based on the memory available on your system. You can view its value by looking at something like IP route cache hash table entries: 262144 (order: 9, 2097152 bytes) in the kernel logs.
  • net.ipv4.route.max_size is the maximum number of entries in the route cache. Except under exceptional circumstances, this value is never exceeded.
  • net.ipv4.route.gc_elasticity is the target average length of a chain in the route cache. The garbage collector will work harder if this value is exceeded. This means that if you multiply this value by the value of rhash_entries, you will get the target average number of entries in the route cache.
  • net.ipv4.route.gc_min_interval_ms is the minimum delay between two runs of the garbage collector, except when the cache is full. The default value should be fine.
  • net.ipv4.route.gc_thresh is a threshold triggering the garbage collector every net.ipv4.route.gc_min_interval_ms milliseconds.
  • net.ipv4.route.gc_timeout is the base value to determine if an entry is old enough to be removed or not. Whatever its value, the garbage collector will attempt to remove the same number of entries. However, this value could potentially influence its efficiency. See below for more details on this.
You may find documentation about those obsolete sysctl values:
  • net.ipv4.route.secret_interval has been removed in Linux 2.6.35; it was used to trigger an asynchronous flush at fixed interval to avoid to fill the cache.
  • net.ipv4.route.gc_interval has been removed in Linux 2.6.38. It is still present until Linux 3.2 but has no effect. It was used to trigger an asynchronous cleanup of the route cache (but in a different way of what the garbage collector does). The garbage collector is now considered efficient enough for the job.

Statistics & monitoring Linux maintains some statistics about the use of the route cache. You can find them in /proc/net/stat/rt_cache. The command lnstat can print them nicely for you:
$ lnstat -s1 -i1 -c-1 -f rt_cache
rt_cache rt_cache rt_cache rt_cache rt_cache rt_cache rt_cache rt_cache rt_cache rt_cache rt_cache rt_cache rt_cache rt_cache rt_cache rt_cache rt_cache 
 entries   in_hit in_slow_ in_slow_ in_no_ro   in_brd in_marti in_marti  out_hit out_slow out_slow gc_total gc_ignor gc_goal_ gc_dst_o in_hlist out_hlis 
                       tot       mc      ute            an_dst   an_src              _tot      _mc                ed     miss  verflow  _search t_search 
 3096848    42309      686        0        0        0        0        0        3        0        0      674      672        0        0    27644        8 
 3096984    41405      636        0        0        0        0        0        3        0        0      623      621        0        0    28189        8 
 3097160    42483      700        0        0        0        0        0        5        0        0      694      692        0        0    29506       12 
Except for the first column, lnstat outputs values in units per second. Let s review some of those values:
  • rt_cache_entries is the number of entries in the route cache. You should compare it with net.ipv4.route.max_size and ensure that the cache is never full to avoid triggering the garbage collector too often.
  • rt_cache_in_hit and rt_cache_out_hit are the number of regular lookups avoided because the result was found in the cache for incoming and outgoing packets, respectively. When the system is a router, most lookups only happen on the incoming side. You should compare this value with rt_cache_in_slow_tot and rt_cache_in_out_slow_tot which are the number of lookups in the route tables. On this system, the efficiency of the route cache is more than 98% which is quite good.
  • rt_cache_gc_total is how often the garbage collector was requested to be triggered while rt_cache_gc_ignored corresponds to how often it was finally not run because it has already been triggered shortly beforehand (less than net.ipv4.route.gc_min_interval_ms milliseconds). The difference between those two values should be very small to ensure that the garbage collector does not run more a handful of times per second.
  • rt_cache_gc_goal_miss is how often the garbage collector was not able to fulfill its goal. This value should rarely be different of 0.
  • rt_cache_gc_dst_overflow is how often the route cache is bigger than the allowed maximum size. This should never happen except when you try to shrink the cache.
  • rt_cache_in_hlist_search and rt_cache_out_hlist_search is how often a lookup in the cache had to look at the next entry in the chain for the computed bucket: each time Linux has to follow the next pointer in a cache entry, it increments one of those counters. It is a clue on the average length of chains in the route cache hash table. Compare those values with the number of cache lookups (hit and miss).
As an illustration, here is a plot of the various statistics exposed above for a router whose route cache receives about 1000 routes par second: Plot of various statistics for the route cache rhash_entries is 1,048,576, as is net.ipv4.route.gc_thresh. Therefore, the garbage collector was requested to be run when the number of entries goes above this level. Because the cache is not full, it is only really run twice per seconds (the value of net.ipv4.gc_interval_ms is 500). net.ipv4.gc_elasticity is set to 3. This explains why the garbage collector is aggressive when the number of entries reached 3,145,728. As you can see, the efficiency is near 100% all the time. The percentage of collisions is rt_cache_in_hlist_search ratio to the sum of rt_cache_in_hit and rt_cache_in_slow_tot.

Tuning Do you need to modify any of those values? You have two questions to ask yourself:
  1. How much efficiency do you want to get from the route cache?
  2. How much memory do you want to dedicate to the route cache?
As a rule of thumb, two millions entries eat about 500 MB of memory on a 64bit system. You should be able to compute the average memory usage and the maximum memory usage from the values of net.ipv4.route.max_size, rhash_entries and net.ipv4.route.gc_elasticity. For example, if the route cache hash table has 262,144 buckets, the maximum allowed number of entries in the cache is 4,194,304 and net.ipv4.route.gc_elasticity is set to 8, the memory usage will be 500 MB on average and 1 GB max. If this is too much, you will need to lower some values. Look at the previous section to compute the current efficiency of your route cache. It should be above 90%. If you are dissatisfied with that, you could increase the cache size. If you want to double the number of entries, double net.ipv4.route.max_size, net.ipv4.route.gc_thresh and rhash_entries but keep net.ipv4.route.gc_elasticity to 8. For the garbage collector to be efficient, the route cache should not be filled too fast. The garbage collector should be able to cope with this situation but this may impact performance because it needs to walk several times the route cache to find entries to expire. Watching gc_goal_miss may give you a hint about this: if this value starts to be different of 0, lower net.ipv4.gc_timeout.

In-depth look into the garbage collector Those different pieces of advice may have puzzled you. We need to understand how the garbage collector works to better cope with them. The garbage collector is triggered when a new entry needs to be added to the cache and the number of entries is superior to net.ipv4.route.gc_thresh. It is implemented in rt_garbage_collect() function. It will do nothing if it has been called less than net.ipv4.route.gc_interval_ms milliseconds and the cache is not full (more than net.ipv4.route.max_size entries).

Setting a goal The garbage collector will first assess the situation. It will look how the number of entries currently in the cache compares to the product of rhash_entries and net.ipv4.gc_elasticity:
  1. Above this limit, it will try to remove at least rhash_entries entries.
  2. Otherwise, it will try to remove no more than half the difference.
If you look at the previous plot, you can easily see the difference when the garbage collector is not aggressive (above 1,048,576 entries but below 3,145,728) and when it is (above 3,145,728 entries). If we assume the garbage collector is able to meet its goal, we can easily simulate its algorithm: Plot showing influence of various kernel parameters The first plot shows what would happen if about 2000 routes are added per second with rhash_entries equal to 262,144 and net.ipv4.route.gc_elasticity set to 8. When net.ipv4.route.gc_threshold is met, the garbage collector has almost no effect. However, when the number of entries reaches 2,097,152, the garbage collector sets its goal to 262,144. From this point, the number of entries oscillates around 2 millions entries. On the second plot, rhash_entries is now equal to 1,048,576 but net.ipv4.route.gc_elasticity has been set to 2. Therefore, the aggressive part of the garbage collectors kicks at the same threshold than for the previous plot. However, its goal is now four times larger and the oscillations have a larger amplitude. The fact that the aggressive part of the garbage collector kicks less often is nullified by the fact that it needs to remove more entries each time. Because of the slight impact on cache efficiency, it seems better to keep net.ipv4.route.gc_elasticity around 8, or 4 if we want to keep shorter chains (but there seems to be no improvement to do so). The other plots show what happens when there is a sudden surge in the number of routes added or when there is a pause.

Meeting the goal Now that we understand how rhash_entries, net.ipv4.route.gc_elasticity and net.ipv4.route.gc_threshold interact, let s look at net.ipv4.route.gc_timeout. Once the garbage collector has set its goal and if it is positive, it needs to choose which entries to remove from the cache. It walks the hash table from the position of its last run and remove entries until its goal is met. If the entry is not current anymore (for example, the network interface associated to it has changed its IP configuration), it is removed. Otherwise, the system looks at the age of the entry and its position in the chain. If the entry is the first in the chain, it is kept only if its age is below net.ipv4.route.gc_timeout. If it is second, it is kept only if its age is below half of net.ipv4.route.gc_timeout. If it is third, the threshold is a quarter of net.ipv4.route.gc_timeout, and so on. The garbage collector will favor short chains. If after a full run of the hash table, the garbage collector was not able to meet its goal, it will start again but will behave more aggressively, as if net.ipv4.route.gc_timeout is set to half of its value. It will do as many passes as necessary until its goal is met or until there is no way to remove any entry (or until it has spent too much time). Once the garbage collector has switched to this more aggressive behavior, it will keep being aggressive for a few cycles (a bit less for each cycle). With a very large value of net.ipv4.route.gc_timeout, the garbage collector will have a hard time to find entries to expire. It will need to do several passes until it is able to expire some entries. On the other hand, if you choose a very small value, the garbage collector may remove entries that were just added, even if there are older entries further in the hash table. For a more in-depth coverage of how the route cache works, look at chapter 33 of Understanding Linux Network Internals. Just be aware that multipath route caching has been removed (and was never really used) and asynchronous cleanup (rt_periodic_timer) does not exist anymore.

Conclusion When tuning the route cache, rhash_entries, net.ipv4.route.gc_elasticity, net.ipv4.route.max_size and net.ipv4.route.gc_threshold are related and should not be modified independently. net.ipv4.route.gc_thresh should be below the product of net.ipv4.route.gc_elasticity and rhash_entries while net.ipv4.route.max_size should be above this value. Linux exposes several interesting metrics related to the route cache. Monitoring them allows one to watch the efficiency of the route cache and may uncover some anomalies (garbage collector running too often, difficulty to remove routes from the cache, ). The route cache subsystem still evolves and some old behaviors have been dismissed. The best documentation is, unfortunately, still the code and other documentations tend to become obsolete. The IPv6 route cache is quite different of the one presented here. Don t blindly apply the same tuning for IPv6.

  1. Linux provides a protocol-independent destination cache subsystem (DST). This component is not a generic cache layer and only enables loose coupling with external subsystems.
  2. Martian addresses are addresses that cannot be used as a source address, either because they are reserved for special-use (like a multicast address) or because of the use of reverse path filtering which checks if a packet received on one interface would be answered on the same interface, as defined in RFC 3704. This feature is enabled by setting rp_filter in Linux.
  3. For more details, you may want to look at include/net/dst.h, include/net/route.h and net/ipv4/route.c.
  4. In fact, the size of the hash table is always a power of two. If specified, rhash_entries is rounded to the next power of two and, internally, is stored as rt_hash_mask + 1.

Rapha&#235;l Hertzog: People behind Debian: Ben Hutchings, member of the kernel team

Ben Hutchings, photo by Andrew Mc Millan, license CC-BY-2.0

Ben Hutchings is a rather unassuming guy but hiding behind his hat, there s a real kernel hacker who backports new drivers for the kernel in Debian stable so that our flagship release supports very recent hardware. Read on to learn more about Ben and the kernel team s projects for Debian Wheezy! Raphael: Who are you? Ben: I m a professional programmer, living in Cambridge, England with my long-suffering wife Nattie. In Debian, I mostly work on the Linux kernel and related packages. Raphael: How did you start contributing to Debian? Ben: I started using Debian in 1998 and at some point I subscribed to Debian Weekly News. So in 2003 I heard about the planned Debian 10th birthday party in Cambridge, and thought I would like to go to that. Somehow I persuaded Nattie that we should go, even though it was on the day of our wedding anniversary! We both enjoyed it; we made new friends and met some old ones (small world). From then on we have
both been socially involved in Debian UK. In 2004 there was a bug-squashing party in Cambridge, and we attended that as well. That s where I really started contributing fixing bugs and learning about Debian packaging. Then in 2005 I made my first package (sgt-puzzles), attended DebConf, and was persuaded to enter the New Maintainer process. NM involved a lot of waiting, but by the time I was given questions and tasks to do I had learned enough to get through quite quickly. In April 2006 I was approved as a Debian Developer. Meanwhile, I looked at the videos from DebConf 5 and thought that it would be useful to distribute them on a DVD. That led me to start writing video software and to get involved in the video team for the next year s DebConf. Raphael: You have been one the main driver behind the removal of non-free firmwares from the kernel. Explain us what you did and what s the status nowadays? Ben: That s giving me a bit more credit than I deserve. For a long time the easy way for drivers to load firmware programs was to include them as a blob in their static data, but more recently the kernel has included a simple method for drivers to request a named blob at run-time. These requests are normally handled by udev by reading from files on disk, although there is a build-time option to include blobs in the kernel. Several upstream and distribution developers worked to convert the older drivers to use this method. I converted the last few of these drivers that Debian included in its binary packages. In the upstream Linux source, those blobs have not actually been removed; they have been moved to a firmware subdirectory. The long-term plan is to remove this while still allowing the inclusion of blobs at build-time from the separate linux-firmware repository. For now, the Debian source package excludes this subdirectory from the upstream tarball, so it is all free software. There are still a few drivers that have not been converted, and in Debian we just exclude the firmware from them (so they cannot be built). And from time to time a driver will be added to the staging section of Linux that includes firmware in the old way. But it s understood in the kernel community that it s one of the bugs that will have to be fixed before the driver can move out of staging . Raphael: Do you believe that Debian has done enough to make it easy for users to install the non-free firmwares that they need? Ben: The installer, the Linux binary packages and initramfs-tools will warn about specific files that may be needed but are missing. Users who have enabled the non-free section should then be able to find the necessary package with apt-cache search, because each of the
binaries built from the firmware-nonfree source package includes driver and file names within its description. For the installer, there is a single tarball that provides everything. We could make this easier, but I think we have gone about as far as we can while following the Debian Social Contract and Debian policy. Raphael: At some point in the past, the Debian kernel team was not working very well. Did the situation improve? Ben: Back in 2008 when I started working on the Linux kernel package to sort out the firmware issues, I think there were some problems of communication and coordination, and quite possibly some members were burned-out. Since then, many of the most active kernel team members have been able to meet face-to-face to discuss future plans at LPC 2009 in Portland and the 2010 mini-DebConf in Paris. We generally seem to have productive discussions on the debian-kernel mailing list and elsewhere, and I think the team is working quite well. Several new contributors have joined after me. I would say our biggest problem today is that we just don t have enough time to do all we want to. Certainly, almost all my Debian time is now taken up with integrating upstream kernel releases and handling some fraction of the incoming bug reports. Occasionally I can take the time to work on actual features or the other packages I m neglecting!
Our biggest problem today is that we just don t have enough time to do all we want to.
Raphael: It is widely known that Linux is maintained in a git repository. But the Debian kernel team is using Subversion. I believe a switch is planned. Why was not git used from the start? Ben: The linux-2.6 source package dates from the time when Linus made his first release using git. I wasn t part of the team back then so I don t know for sure why it was imported to Subversion. However, at that time hardly anyone knew how to use git, no-one had experience hosting public git repositories, and Alioth certainly didn t offer that option. Today there are no real blockers: everyone on the kernel team is familiar with using git; Alioth is ready to host it; we don t have per-architecture patches that would require large numbers of branches. But it still takes time to plan such a conversion for what is a relatively complex source package (actually a small set of related source packages). Raphael: What are your plans for Debian Wheezy? Ben: Something I ve already done, in conjunction with the installer team, is to start generating udebs from the linux-2.6 source package. The kernel and modules have to be repacked into lots of little udebs to avoid using too much memory during installation. The configuration for this used to be in a bunch of separate source packages; these could get out of step with the kernel build configuration and this would only be noticed some time later. Now we can update them both at the same time, they are effectively cross-checked on every upload, and the installer can always be built from the latest kernel version in testing or unstable. I think that we should be encouraging PC users to install the 64-bit build (amd64), but many users will still use 32-bit (i386) for backward compatibility or out of habit. On i386, we ve slightly reduced the variety of kernel flavours by getting rid of 686 and making 686-pae the default (previously this was called 686-bigmem ). This means that the NX security feature will be used on all systems that support it. It should also mean that the first i386 CD can have suitable kernel packages for all systems. I have been trying to work on providing a full choice of Linux Security Modules (LSMs). Despite their name, they cannot be built as kernel modules, so every enabled LSM is a waste of memory on the systems that don t use it. This is a significant concern for smaller Debian systems. My intent is to allow all unused LSMs to be freed at boot time so that we can happily enable all of them. I recently proposed to drop support for older x86 systems, starting with 486-class processors in wheezy. In general, this would allow the use of more compiler optimisations throughout userland and the kernel. However it seems that there isn t that much to be gained unless we also drop 586-class processors, and there are still quite a few of those in use. So I think this will have to wait. Uwe Kleine-K nig has been working to include real-time support (also known as PREEMPT_RT). This can provide low and very predictable I/O latency, which is useful for live audio synthesis, for example. It still requires a number of patches and a build configuration change, resulting in a separate binary package. We re currently only building that for 64-bit PCs. (You may notice this is missing for Linux 3.1, because the real-time developers skipped this release.) Raphael: What s the biggest problem of Debian? Ben: I think we try too hard to accommodate every possible option, without regard for the cost to developers and users in general. As an example, we now have sysvinit, file-rc, upstart and systemd all in testing. Daemon maintainers can t rely on any advanced features of upstart or systemd because we refuse to choose between them. And the decision to support the FreeBSD kernel means that we cannot choose upstart or systemd as the only option. So all daemon maintainers will have to maintain those baroque init scripts for the indefinite future. We really should be able to decide as a distribution that when one option is technically good and popular then it can be made the only option. But no-one really has the authority to do that, so we muddle along with the pretence that all the options are equally valid and functional, while none of them is supported as well as they should be.
We try too hard to accommodate every possible option, without regard for the cost to developers and users in general.
We also try to build every package on every architecture, in general. I m quite sure there are many (package, architecture) combinations that have no users, ever. But if at some point that combination FTBFS, developers will waste time investigating and fixing that time that could have been spent working on bugs and features that users actually care about. Yes, sure, portability is good but you can t prove portability just by making a package compile on every architecture. This also applies to the selection of drivers for the kernel, by the way. Raphael: Is there someone in Debian that you admire for their contributions? Well, there are many people, but I will pick out just a few: Steve McIntyre, for his work as DPL to improve communication with the various Debian derivatives and to bring fresh blood into various core teams. Also for being a generous host for countless Debian social and bug-squashing events. Stefano Zacchiroli, for improving further on communications with both downstream and upstream projects, and for regularly exercising his power to lead discussions to the benefit of the project. Julien Cristau, for maintaining good humour while not only fighting against the tide of graphics driver regressions in X and the Linux kernel but also working on release management. Jonathan Nieder, for taking on the unglamorous and frustrating task of kernel bug triage as a non-maintainer and developing it to a fine art.
Thank you to Ben for the time spent answering my questions. I hope you enjoyed reading his answers as I did.

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12 December 2011

Dominique Dumont: What name for Config::Model s new command line ? cfg or something else ?

Hello As Damyan mentioned last summer in Debconf, the current command interface to Config::Model Perl module is rather cumbersome as it involves quite a lot of typing. First, config-edit command name is too long. Even with the help bash completion, this does not compare well with git or hg command. Then all operation require options. For instance, the -application option is required to specify what you will be working on. A required option is a good example of an oxymoron. Which may be funny but which is not user friendly So, here s the synopsis of the new command I m working on:
# edit dpkg config with GUI (Tk or curses, or readline)
cfg edit dpkg 
# just check the validity of the file, show warnings
# and suggested fixes
# does not modify the file
cfg check dpkg
# check the file, remove deprecated parameters,
# migrate data to new parameters and save
cfg migrate dpkg 
# like migrate, but also apply all suggested fixes
cfg fix dpkg 
# like migrate and modify configuration
# with command line argument
cfg modify dpkg source format="quilt (3.0)"
# access dpkg parameters through a fuse file
# system. data are saved when fs is unmounted
cfg fusefs dpkg fuse-dir
# dump configuration data in config-model format
cfg dump dpkg   
# list all available applications
cfg list 
# more general synopsis
cfg [ global_options ] command application [ options ] arguments
This synopsis use dpkg as an example, but it could be used for any of the available models (e.g. ssh, lcdproc, multistrap ). The main question I have for you is: Is cfg name good ? I mean it s short, descriptive enough. But it s also quite ugly. Does anyone have a better idea ? And what do you think of the synopsis shown above ? Are the sub-command name descriptive enough ? All the best

NeuroDebian: Chroot workaround for fslview (HOWTO)

Chroot workaround for fslview (HOWTO)
Preamble Sometimes research software lags behind developments in libraries it relies upon, because necessary changes to the code might require considerable effort, and thus time. That leads to difficulties building those tools using up-to-date library versions due API incompatibility. That is what happened with fslview from the FSL suite. Today, at the end of 2011, it still relies on Qt3 and VTK GUI support for it.

Note Last version of Qt3, 3.3.8, was released in February 2007, with official support by Trolltech terminated later that year.

Qt4 was first released in 2005, and current stable series 4.7 released appeared in September 2010.

Because of its age and discontinued upstream support, Qt3 was orphaned in Debian, and tools relying on it were encouraged to migrate to use Qt4. As a result, although Qt3 itself is still present in Debian (and thus Ubuntu), VTK GUI support for Qt3 (package libvtk5.4-qt3) which fslview uses, was removed from Debian due to Qt3 deprecation. It should be made clear that it was not removed to annoy people, but rather because it became unfeasible to maintain its robust building and functioning. So nowadays fslview is present only in those previous releases of Debian and Ubuntu which carry the libvtk5.4-qt3 library. Those are Debian squeeze (stable), Ubuntu nutty and maverick. If you upgraded your system from one of those releases, chances are that you still have fslview (and required libraries) installed although not they are not available from the APT repository anymore. Therefore fresh systems installations will not have them at all.
Workaround While everyone is waiting for a new release of fslview compatible with Qt4 there are possible workarounds to keep research going on bleeding edge Debian-based operating systems. The first, obvious choice for a FOSS enthusiast, is to build fslview from source by first building VTK Qt3 bindings, possibly after building Qt3 itself. While it might be educationally valuable and exciting, we are afraid in the end it might be more frustrating than useful. Therefore we would like to suggest another, much more straightforward and hopefully painless approach lightweight virtualization, or chroot jailing, which exists in Unix-land since 1970s. With this exercise in 4 simple steps we will install a complete (minimalistic) installation of Debian stable into a separate directory without harming the original system installation. We will provide a convenience wrapper to run fslview as if it was installed on the main system. So your system will stay intact while you would enhance it with additional software in a stable Debian environment. Moreover if security or critical fixes to any components of that installation become available, this chroot environment, being a complete Debian installation, could be as easily upgraded as your main system, thus guaranteeing robust performance. Although we demonstrate this setup with fslview in mind, such approach is generally useful for various use cases. For example, we have used it in the opposite situation on stable Debian systems we needed to run some software available only from Debian unstable or testing, and backporting of all required dependencies was either cumbersome or just impossible without sacrificing stability of the system.
Prerequisites For this exercise you would need
  • 3 20 minutes depending on the bandwidth to the Debian mirror and efficiency in cut/paste operations
  • root access to the system while performing this setup, although end-users of fslview would not need root access after everything is set up
  • 2 additional tools debootstrap to install Debian in a directory and a convenience utility schroot to enable such an environment
Procedure
  • Install the tools:

    sudo apt-get install debootstrap schroot
  • Choose a location with enough space (600 MB should be enough) and install a complete Debian squeeze installation with fslview:

    sudo debootstrap --include=fslview squeeze /srv/chroots/squeeze http://ftp.us.debian.org/debian

    Note

    You might like to adjust the URL to a Debian mirror closer to you

  • Create schroot configuration file /etc/schroot/chroot.d/squeeze with the following content:

    [squeeze]
    description=Debian squeeze (6.x stable)
    type=directory
    directory=/srv/chroots/squeeze
    users=YOURLOGIN
    aliases=debian,default
    Replace YOURLOGIN with a comma separated list of users who should be allowed to access this chroot environment (see man schroot.conf for more options, e.g. how to specify whole groups with groups=..., etc.)
  • At this point you should already be able to invoke any command within the chroot environment, so just create a little shell script /usr/local/bin/fslview, make it executable and be all set:

    echo -e '#!/bin/sh\nschroot -p -c squeeze /usr/bin/fslview "$@"' > /usr/local/bin/fslview
    chmod a+x /usr/local/bin/fslview

    Note

    You might need to become root for the above.

Optional steps Although at this point you can run fslview from the chroot-ed environment, we would suggest a few additional steps. For some of them (marked with chroot-root) you would need to become root in a chroot environment via following steps:
  • enter chroot using schroot -c squeeze -p
  • become root (via su command, root password should be the same as on the main system)
So here are recommended optional additions:
  • chroot-root: Enable NeuroDebian repository. Choose squeeze release and mirror of preference (remove sudo from provided cmdline).

  • chroot-root: Enable security and functionality updates:

    sed -e 's,squeeze,squeeze-updates,g' /etc/apt/sources.list > /etc/apt/sources.list.d/updates.list
    echo 'deb http://security.debian.org/ stable/updates main' > /etc/apt/sources.list.d/security.list
    apt-get update
    apt-get upgrade
  • Make fsl atlases accessible within the chroot environment. There are two ways and you must choose only one of them, otherwise you might damage your main system installation.

    • chroot-root: Install atlases packages in the chroot-ed environment:

      apt-get install fsl-atlases
      Although this is the best/correct way it would require additional 200MB of space, possibly duplicating what you already have installed in the main system. Also it requires enabling of NeuroDebian repository in chroot environment.
    • Alternatively you can bind-mount those directories with atlases installed on the main system within chroot. For that edit (as root on the main system) /etc/schroot/default/fstab and add following entries:

      /usr/share/fsl/data/atlases /usr/share/fsl/data/atlases none rw,bind 0 0
      /usr/share/data             /usr/share/data             none rw,bind 0 0
      You need to be aware of the potential consequences of this second approach: Any package that installs files under /usr/share/data will modify files in the same directory outside the chroot as well. If you don t want to risk that don t use this method and simply install the necessary data packages inside the chroot environment too, as describe before.

      Note

      Similarly you can bind-mount any other directory you would like to make visible in chroot. Just be careful to not overlap with system directories in chroot which already carry something.

Also you might like to read man schroot on how to enable persistent sessions so that chroot initiation could be done ones during boot instead of per each fslview invocation If you have any comments (typos, improvements, etc) feel welcome to leave a comment below, or just email us@NeuroDebian .

Simon Josefsson: Small syslog server

My home network has several devices that do not have large persistent storage to keep log files. For example, my wireless routers based on OpenWRT doesn t log to the limited local storage it has, and a Flukso energy metering device log power readings to a ramdisk. These devices log a fair amount of information that I ideally would like to keep for later analysis. I have never before seen a need to setup a syslogd server, thinking that storing logs locally and keeping regular backups of the machine is good enough. However, it appears like this situation calls for a syslogd server. I found an old NSLU2 in my drawer and installed Debian Squeeze on it following Martin Michlmayr s instructions. I m using a 4GB USB memory stick for storage, which should hold plenty of log data. I keep backups of the machine in case the USB memory stick wears out. After customizing the installation to my preferences (disable ssh passwords, disable portmap/rpc.statd/exim4, installing etckeeper, emacs23-nox, etc) I am ready to configure Rsyslog. I found what looked like the perfect configuration example, Storing messages from a remote system into a specific file , but it requires me to hard code a bit too much information in the configuration file for my taste. Instead, I found the DynFile concept. With a file /etc/rsyslogd.d/logger.conf as below I can point any new device to my log server and it will automatically create a new file for it. And since the dates are embedded into the filename, I get log rotation suitable for rsync-style backups for free.
$ModLoad imudp
$UDPServerRun 514 $ModLoad imtcp
$InputTCPServerRun 514 $template DynFile, /var/log/network-%HOSTNAME%-%$year%-%$month%-%$day%.log
:fromhost-ip, !isequal, 127.0.0.1 ?DynFile
:fromhost-ip, !isequal, 127.0.0.1 ~

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Christian Perrier: Defoma removal

Thanks to the longstading work by Paul Wise in nearly 3 years...and with some help from my side (and from other members of the font packaging team), we're getting closer of a longstanding goal : removing Defoma from the archive. Defoma is indeed obsoleted by fontconfig, which doesn't need these "hints" file, turning the packaging of fonts into a very simple process. On last Saturday, Paul sent the removal request for defoma. The request mentions blocking bugs that are, for most of them, requests for font packages to drop the dependency on defoma. As we already sent patches for these bugs, I started NMU'ing the remaining packages this week-end. Most of them were apparently nearly abandoned packages, so I had no shame doing that so quickly. Indeed, I no longer fear NMU'ing packages even for non critical issues and I even sometimes no longer fear adding a few other fixes when the packages are very obviously poorly maintained (things like source v3, debhelper compatibility bump, build- indep arch targets support, etc.). After this NMU wave, we should be left, in one week, with only five packages blocking the removal of defoma. I might even NMU some of them, though some are TeX-related packages providing T1 fonts additionnally to TrueType ones...something I'l less familiar with. Whatever happens, I now nearly sure that wheezy will not have defoma. Yay! Hats off to Paul.

11 December 2011

Stefano Zacchiroli: bits from the DPL for November 2011

Mako's IronBlogger is a great idea. I often find myself postponing blog posts for a very long time, simply out of laziness. IronBlogger provides a nice community incentive to counter (my) laziness and blogging more often. As a related challenge, we have to face the fact that different subsets of our communities use different media to stay informed: mailing lists, blog (aggregators), social media, IRC, etc. Disparities in how they stay informed are a pity and can be countered using multiple medias at a time. Although I haven't blogged very often as of lately, I managed to keep the Debian (Developer) community informed of what happens in "DPL land" on a monthly basis, by the means of bits from the DPL mails sent to d-d-a. While the target of bits mails perfectly fits d-d-a, there is no reason to exclude a broader public from them. After all, who knows, maybe we'll find the next DPL victim^W candidate among Planet readers! Bonus point: blogging this also helped me realize that my mails are not as markdown-clean as I thought they were. I still have no IronBlogger squad, though. (And sharing beers with folks in the Boston area is not terribly handy for me ). Anyone interested in setting up a BloggeurDeFer in the Paris area? (SCNR)
Dear Project Members,
another month has passed, it's time to bother you again about what has happened in DPL land in November (this time, with even less delay than the last one, ah!). Call for Help: press/publicity team I'd like to highlight the call for help by the press / publicity teams. They are "hiring" and have sent out a call for new members a couple of weeks ago. The work they do is amazing and is very important for Debian, as important as maintaining packages or fixing RC bugs during a freeze. It is only by letting the world know what Debian is and what we do, that we can keep the Project thriving. And letting the world know is exactly what the publicity and press teams do. If you're into writing, blogging, or simply have a crush for social media, please read the call and "apply"! Interviews November has apparently been the "let's interview the DPL" month. I've spent quite some time giving interviews to interested journalists about various topics. For both my embarrassment and transparency on what I've said on behalf of Debian, here are the relevant links: Assets Legal advice (work in progress) Relationships with others Miscellanea Thanks for reading thus far,
and happy hacking.
PS as usual, the boring day-to-day activity log is available at master:/srv/leader/news/bits-from-the-DPL.*

Cyril Brulebois: Fixing libdrm for intel

If you re having issues with video playback in unstable on Intel hardware, this post is for you. Some buffer freeing code was added in libdrm 2.4.28 to try and fix exhaustion of per-process limits. Some safeguards (assert()) were put in place to see whether some other components needed fixing (like unbalanced map()/unmap()). It s hard to miss those, since the server crashes when something s wrong. Good news: for affected users, downgrading to libdrm 2.4.27 (currently available in testing) should restore a functional setup. So far, patches have floated around for libva[1], xserver-xorg-video-intel[1,2] and libdrm[1,2,3] itself. Since libdrm has already been exposed to a wide audience for a while, a new upstream release is planned in a few days, disabling those assert()s. Other packages will then have some extra time to get new releases with the appropriate patches.

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