Search Results: "jan"

1 August 2016

Chris Lamb: Free software activities in July 2016

Here is my monthly update covering a large part of what I have been doing in the free software world (previously):



Debian
  • Created a proof-of-concept wrapper for pymysql to reduce the diff between Ubuntu and Debian's packaging of python-django. (tree)
  • Improved the NEW queue HTML report to display absolute timestamps when placing the cursor over relative times as well as to tidy the underlying HTML generation.
  • Tidied and pushed for the adoption of a patch against dak to also send mails to the signer of an uploaded package on security-master. (#796784)

LTS

This month I have been paid to work 14 hours on Debian Long Term Support (LTS). In that time I did the following:
  • "Frontdesk" duties, triaging CVEs, etc.
  • Improved the bin/lts-cve-triage.py script to ignore packages that have been marked as unsupported.
  • Improved the bin/contact-maintainers script to print a nicer error message if you mistype the package name.
  • Issued the following advisories:
    • DLA 541-1 for libvirt making the password policy consistent across the QEMU and VNC backends with respect to empty passwords.
    • DLA 574-1 for graphicsmagick fixing two denial-of-service vulnerabilities.
    • DLA 548-1 and DLA 550-1 for drupal7 fixing an open HTTP redirect vulnerability and a privilege escalation issue respectfully.
    • DLA 557-1 for dietlibc removing the current directory from the current path.
    • DLA 577-1 for redis preventing the redis-cli tool creating world-readable history files.

Uploads
  • redis:
    • 3.2.1-2 Avoiding race conditions in upstream test suite.
    • 3.2.1-3 Correcting world_readable ~/.rediscli_history files.
    • 3.2.1-4 Preventing a race condition in the previous upload's patch.
    • 3.2.2-1 New upstream release.
    • 3.2.1-4~bpo8+1 Backport to jessie-backports.
  • strip-nondeterminism:
    • 0.020-1 Improved the PNG handler to not blindly trust chunk sizes, rewriting most of the existing code.
    • 0.021-1 Correcting a regression in the PNG handler where it would leave temporary files in the generated binaries.
    • 0.022-1 Correcting a further regression in the PNG handler with respect to IEND chunk detection.
  • python-redis (2.10.5-1~bpo8+1) Backport to jessie-backports.
  • reprotest (0.2) Sponsored upload.

Patches contributed


I submitted patches to fix faulty initscripts in lm-sensors, rsync, sane-backends & vsftpd.

In addition, I submitted 7 patches to fix typos in debian/rules against cme:, gnugk: incorrect reference to dh_install_init, php-sql-formatter, python-django-crispy-forms, libhook-lexwrap-perl, mknbi & ruby-unf-ext.

I also submitted 6 patches to fix reproducible toolchain issues (ie. ensuring the output is reproducible rather than the package itself) against libextutils-parsexs-perl: Please make the output reproducible, perl, naturaldocs, python-docutils, ruby-ronn & txt2tags.

Lastly, I submitted 65 patches to fix specific reproducibility issues in amanda, boolector, borgbackup, cc1111, cfingerd, check-all-the-things, cobbler, ctop, cvs2svn, eb, eurephia, ezstream, feh, fonts-noto, fspy, ftplib, fvwm, gearmand, gngb, golang-github-miekg-pkcs11, gpick, gretl, hibernate, hmmer, hocr, idjc, ifmail, ironic, irsim, lacheck, libmemcached-libmemcached-perl, libmongoc, libwebsockets, minidlna, mknbi, nbc, neat, nfstrace, nmh, ntopng, pagekite, pavuk, proftpd-dfsg, pxlib, pysal, python-kinterbasdb, python-mkdocs, sa-exim, speech-tools, stressapptest, tcpflow, tcpreen, ui-auto, uisp, uswsusp, vtun, vtwm, why3, wit, wordgrinder, xloadimage, xmlcopyeditor, xorp, xserver-xorg-video-openchrome & yersinia.

RC bugs

I also filed 68 RC bugs for packages that access the internet during build against betamax, curl, django-localflavor, django-polymorphic, dnspython, docker-registry, elasticsearch-curator, elib.intl, elib.intl, elib.intl, fabulous, flask-restful, flask-restful, flask-restful, foolscap, gnucash-docs, golang-github-azure-go-autorest, golang-github-fluent-fluent-logger-golang, golang-github-franela-goreq, golang-github-mesos-mesos-go, golang-github-shopify-sarama, golang-github-unknwon-com, golang-github-xeipuuv-gojsonschema, htsjdk, lemonldap-ng, libanyevent-http-perl, libcommons-codec-java, libfurl-perl, libgravatar-url-perl, libgravatar-url-perl, libgravatar-url-perl, libgravatar-url-perl, libgravatar-url-perl, libhttp-async-perl, libhttp-oai-perl, libhttp-proxy-perl, libpoe-component-client-http-perl, libuv, libuv1, licenseutils, licenseutils, licenseutils, musicbrainzngs, node-oauth, node-redis, nodejs, pycurl, pytest, python-aiohttp, python-asyncssh, python-future, python-guacamole, python-latexcodec, python-pysnmp4, python-qtawesome, python-simpy, python-social-auth, python-structlog, python-sunlight, python-webob, python-werkzeug, python-ws4py, testpath, traitlets, urlgrabber, varnish-modules, webtest & zurl.


Finally, I filed 100 FTBFS bugs against abind, backup-manager, boot, bzr-git, cfengine3, chron, cloud-sptheme, cookiecutter, date, django-uwsgi, djangorestframework, docker-swarm, ekg2, evil-el, fasianoptions, fassets, fastinfoset, fest-assert, fimport, ftrading, gdnsd, ghc-testsuite, golang-github-magiconair-properties, golang-github-mattn-go-shellwords, golang-github-mitchellh-go-homedir, gplots, gregmisc, highlight.js, influxdb, jersey1, jflex, jhdf, kimwitu, libapache-htpasswd-perl, libconfig-model-itself-perl, libhtml-tidy-perl, liblinux-prctl-perl, libmoox-options-perl, libmousex-getopt-perl, libparanamer-java, librevenge, libvirt-python, license-reconcile, louie, mako, mate-indicator-applet, maven-compiler-plugin, mgt, mgt, mgt, misc3d, mnormt, nbd, ngetty, node-xmpp, nomad, perforate, pyoperators, pyqi, python-activipy, python-bioblend, python-cement, python-gevent, python-pydot-ng, python-requests-toolbelt, python-ruffus, python-scrapy, r-cran-digest, r-cran-getopt, r-cran-lpsolve, r-cran-rms, r-cran-timedate, resteasy, ruby-berkshelf-api-client, ruby-fog-libvirt, ruby-grape-msgpack, ruby-jquery-rails, ruby-kramdown-rfc2629, ruby-moneta, ruby-parser, ruby-puppet-forge, ruby-rbvmomi, ruby-redis-actionpack, ruby-unindent, ruby-web-console, scalapack-doc, scannotation, snow, sorl-thumbnail, svgwrite, systemd-docker, tiles-request, torcs, utf8proc, vagrant-libvirt, voms-api-java, wcwidth, xdffileio, xmlgraphics-commons & yorick.

FTP Team

As a Debian FTP assistant I ACCEPTed 114 packages: apertium-isl-eng, apertium-mk-bg, apertium-urd-hin, apprecommender, auto-apt-proxy, beast-mcmc, caffe, caffe-contrib, debian-edu, dh-make-perl, django-notification, dpkg-cross, elisp-slime-nav, evil-el, fig2dev, file, flightgear-phi, friendly-recovery, fwupd, gcc-5-cross, gdbm, gnustep-gui, golang-github-cznic-lldb, golang-github-dghubble-sling, golang-github-docker-leadership, golang-github-rogpeppe-fastuuid, golang-github-skarademir-naturalsort, golang-glide, gtk+2.0, gtranscribe, kdepim4, kitchen, lepton, libcgi-github-webhook-perl, libcypher-parser, libimporter-perl, liblist-someutils-perl, liblouis, liblouisutdml, libneo4j-client, libosinfo, libsys-cpuaffinity-perl, libtest2-suite-perl, linux, linux-grsec, lua-basexx, lua-compat53, lua-fifo, lua-http, lua-lpeg-patterns, lua-mmdb, lua-openssl, mash, mysql-5.7, node-quickselect, nsntrace, nvidia-graphics-drivers, nvidia-graphics-drivers-legacy-304xx, nvidia-graphics-drivers-legacy-340xx, openorienteering-mapper, oslo-sphinx, p4est, patator, petsc, php-mailparse, php-yaml, pykdtree, pypass, python-bioblend, python-cotyledon, python-jack-client, python-mido, python-openid-cla, python-os-api-ref, python-pydotplus, python-qtconsole, python-repoze.sphinx.autointerface, python-vispy, python-zenoss, r-cran-bbmle, r-cran-corpcor, r-cran-ellipse, r-cran-minpack.lm, r-cran-rglwidget, r-cran-rngtools, r-cran-scatterd3, r-cran-shinybs, r-cran-tibble, reproject, retext, ring, ruby-github-api, ruby-rails-assets-jquery-ui, ruby-swd, ruby-url-safe-base64, ruby-vmstat, ruby-webfinger, rustc, shadowsocks-libev, slepc, staticsite, steam, straight.plugin, svgwrite, tasksh, u-msgpack-python, ufo2otf, user-mode-linux, utf8proc, vizigrep, volk, wchartype, websockify & wireguard.

20 July 2016

Daniel Stender: Theano in Debian: maintenance, BLAS and CUDA

I'm glad to announce that we have the current release of Theano (0.8.2) in Debian unstable now, it's on its way into the testing branch and the Debian derivatives, heading for Debian 9. The Debian package is maintained in behalf of the Debian Science Team. We have a binary package with the modules in the Python 2.7 import path (python-theano), if you want or need to stick to that branch a little longer (as a matter of fact, in the current popcon stats it's the most installed package), and a package running on the default Python 3 version (python3-theano). The comprehensive documentation is available for offline usage in another binary package (theano-doc). Although Theano builds its extensions on run time and therefore all binary packages contain the same code, the source package generates arch specific packages1 for the reason that the exhaustive test suite could run over all the architectures to detect if there are problems somewhere (#824116). what's this? In a nutshell, Theano is a computer algebra system (CAS) and expression compiler, which is implemented in Python as a library. It is named after a Classical Greek female mathematician and it's developed at the LISA lab (located at MILA, the Montreal Institute for Learning Algorithms) at the Universit de Montr al. Theano tightly integrates multi-dimensional arrays (N-dimensional, ND-array) from NumPy (numpy.ndarray), which are broadly used in Scientific Python for the representation of numeric data. It features a declarative Python based language with symbolic operations for the functional definition of mathematical expressions, which allows to create functions that compute values for them. Internally the expressions are represented as directed graphs with nodes for variables and operations. The internal compiler then optimizes those graphs for stability and speed and then generates high-performance native machine code to evaluate resp. compute these mathematical expressions2. One of the main features of Theano is that it's capable to compute also on GPU processors (graphical processor unit), like on custom graphic cards (e.g. the developers are using a GeForce GTX Titan X for benchmarks). Today's GPUs became very powerful parallel floating point devices which can be employed also for scientific computations instead of 3D video games3. The acronym "GPGPU" (general purpose graphical processor unit) refers to special cards like NVIDIA's Tesla4, which could be used alike (more on that below). Thus, Theano is a high-performance number cruncher with an own computing engine which could be used for large-scale scientific computations. If you haven't came across Theano as a Pythonistic professional mathematician, it's also one of the most prevalent frameworks for implementing deep learning applications (training multi-layered, "deep" artificial neural networks, DNN) around5, and has been developed with a focus on machine learning from the ground up. There are several higher level user interfaces build in the top of Theano (for DNN, Keras, Lasagne, Blocks, and others, or for Python probalistic programming, PyMC3). I'll seek for some of them also becoming available in Debian, too. helper scripts Both binary packages ship three convenience scripts, theano-cache, theano-test, and theano-nose. Instead of them being copied into /usr/bin, which would result into a binaries-have-conflict violation, the scripts are to be found in /usr/share/python-theano (python3-theano respectively), so that both module packages of Theano can be installed at the same time. The scripts could be run directly from these folders, e.g. do $ python /usr/share/python-theano/theano-nose to achieve that. If you're going to heavy use them, you could add the directory of the flavour you prefer (Python 2 or Python 3) to the $PATH environment variable manually by either typing e.g. $ export PATH=/usr/share/python-theano:$PATH on the prompt, or save that line into ~/.bashrc. Manpages aren't available for these little helper scripts6, but you could always get info on what they do and which arguments they accept by invoking them with the -h (for theano-nose) resp. help flag (for theano-cache). running the tests On some occasions you might want to run the testsuite of the installed library, like to check over if everything runs fine on your GPU hardware. There are two different ways to run the tests (anyway you need to have python ,3 -nose installed). One is, you could launch the test suite by doing $ python -c 'import theano; theano.test() (or the same with python3 to test the other flavour), that's the same what the helper script theano-test does. However, by doing it that way some particular tests might fail by raising errors also for the group of known failures. Known failures are excluded from being errors if you run the tests by theano-nose, which is a wrapper around nosetests, so this might be always the better choice. You can run this convenience script with the option --theano on the installed library, or from the source package root, which you could pull by $ sudo apt-get source theano (there you have also the option to use bin/theano-nose). The script accept options for nosetests, so you might run it with -v to increase verbosity. For the tests the configuration switch config.device must be set to cpu. This will also include the GPU tests when a proper accessible device is detected, so that's a little misleading in the sense of it doesn't mean "run everything on the CPU". You're on the safe side if you run it always like this: $ THEANO_FLAGS=device=cpu theano-nose, if you've set config.device to gpu in your ~/.theanorc. Depending on the available hardware and the used BLAS implementation (see below) it could take quite a long time to run the whole test suite through, on the Core-i5 in my laptop that takes around an hour even excluded the GPU related tests (which perform pretty fast, though). Theano features a couple of switches to manipulate the default configuration for optimization and compilation. There is a rivalry between optimization and compilation costs against performance of the test suite, and it turned out the test suite performs a quicker with lesser graph optimization. There are two different switches available to control config.optimizer, the fast_run toggles maximal optimization, while fast_compile runs only a minimal set of graph optimization features. These settings are used by the general mode switches for config.mode, which is either FAST_RUN by default, or FAST_COMPILE. The default mode FAST_RUN (optimizer=fast_run, linker=cvm) needs around 72 minutes on my lower mid-level machine (on un-optimized BLAS). To set mode=FAST_COMPILE (optimizer=fast_compile, linker=py) brings some boost for the performance of the test suite because it runs the whole suite in 46 minutes. The downside of that is that C code compilation is disabled in this mode by using the linker py, and also the GPU related tests are not included. I've played around with using the optimizer fast_compile with some of the other linkers (c py and cvm, and their versions without garbage collection) as alternative to FAST_COMPILE with minimal optimization but also machine code compilation incl. GPU testing. But to my experience, fast_compile without another than the linker py results in some new errors and failures of some tests on amd64, and this might the case also on other architectures, too. By the way, another useful feature is DebugMode for config.mode, which verifies the correctness of all optimizations and compares the C to Python results. If you want to have detailed info on the configuration settings of Theano, do $ python -c 'import theano; print theano.config' less, and check out the chapter config in the library documentation in the documentation. cache maintenance Theano isn't a JIT (just-in-time) compiler like Numba, which generates native machine code in the memory and executes it immediately, but it saves the generated native machine code into compiledirs. The reason for doing it that way is quite practical like the docs explain, the persistent cache on disk makes it possible to avoid generating code for the same operation, and to avoid compiling again when different operations generate the same code. The compiledirs by default are located within $(HOME)/.theano/. After some time the folder becomes quite large, and might look something like this:
$ ls ~/.theano
compiledir_Linux-4.5--amd64-x86_64-with-debian-stretch-sid--2.7.11+-64
compiledir_Linux-4.5--amd64-x86_64-with-debian-stretch-sid--2.7.12-64
compiledir_Linux-4.5--amd64-x86_64-with-debian-stretch-sid--2.7.12rc1-64
compiledir_Linux-4.5--amd64-x86_64-with-debian-stretch-sid--3.5.1+-64
compiledir_Linux-4.5--amd64-x86_64-with-debian-stretch-sid--3.5.2-64
compiledir_Linux-4.5--amd64-x86_64-with-debian-stretch-sid--3.5.2rc1-64
If the used Python version changed like in this example you might to want to purge obsolete cache. For working with the cache resp. the compiledirs, the helper theano-cache comes in handy. If you invoke it without any arguments the current cache location is put out like ~/.theano/compiledir_Linux-4.5--amd64-x86_64-with-debian-stretch-sid--2.7.12-64 (the script is run from /usr/share/python-theano). So, the compiledirs for the old Python versions in this example (11+ and 12rc1) can be removed to free the space they occupy. All compiledirs resp. cache directories meaning the whole cache could be erased by $ theano-cache basecompiledir purge, the effect is the same as by performing $ rm -rf ~/.theano. You might want to do that e.g. if you're using different hardware, like when you got yourself another graphics card. Or habitual from time to time when the compiledirs fill up so much that it slows down processing with the harddisk being very busy all the time, if you don't have an SSD drive available. For example, the disk space of build chroots carrying (mainly) the tests completely compiled through on default Python 2 and Python 3 consumes around 1.3 GB (see here). BLAS implementations Theano needs a level 3 implementation of BLAS (Basic Linear Algebra Subprograms) for operations between vectors (one-dimensional mathematical objects) and matrices (two-dimensional objects) carried out on the CPU. NumPy is already build on BLAS and pulls the standard implementation (libblas3, soure package: lapack), but Theano links directly to it instead of using NumPy as intermediate layer to reduce the computational overhead. For this, Theano needs development headers and the binary packages pull libblas-dev by default, if any other development package of another BLAS implementation (like OpenBLAS or ATLAS) isn't already installed, or pulled with them (providing the virtual package libblas.so). The linker flags could be manipulated directly through the configuration switch config.blas.ldflags, which is by default set to -L/usr/lib -lblas -lblas. By the way, if you set it to an empty value, Theano falls back to using BLAS through NumPy, if you want to have that for some reason. On Debian, there is a very convenient way to switch between BLAS implementations by the alternatives mechanism. If you have several alternative implementations installed at the same time, you can switch from one to another easily by just doing:
$ sudo update-alternatives --config libblas.so
There are 3 choices for the alternative libblas.so (providing /usr/lib/libblas.so).
  Selection    Path                                  Priority   Status
------------------------------------------------------------
* 0            /usr/lib/openblas-base/libblas.so      40        auto mode
  1            /usr/lib/atlas-base/atlas/libblas.so   35        manual mode
  2            /usr/lib/libblas/libblas.so            10        manual mode
  3            /usr/lib/openblas-base/libblas.so      40        manual mode
Press <enter> to keep the current choice[*], or type selection number:
The implementations are performing differently on different hardware, so you might want to take the time to compare which one does it best on your processor (the other packages are libatlas-base-dev and libopenblas-dev), and choose that to optimize your system. If you want to squeeze out all which is in there for carrying out Theano's computations on the CPU, another option is to compile an optimized version of a BLAS library especially for your processor. I'm going to write another blog posting on this issue. The binary packages of Theano ship the script check_blas.py to check over how well a BLAS implementation performs with it, and if everything works right. That script is located in the misc subfolder of the library, you could locate it by doing $ dpkg -L python-theano grep check_blas (or for the package python3-theano accordingly), and run it with the Python interpreter. By default the scripts puts out a lot of info like a huge perfomance comparison reference table, the current setting of blas.ldflags, the compiledir, the setting of floatX, OS information, the GCC version, the current NumPy config towards BLAS, NumPy location and version, if Theano linked directly or has used the NumPy binding, and finally and most important, the execution time. If just the execution time for quick perfomance comparisons is needed this script could be invoked with -q. Theano on CUDA The function compiler of Theano works with alternative backends to carry out the computations, like the ones for graphics cards. Currently, there are two different backends for GPU processing available, one docks onto NVIDIA's CUDA (Compute Unified Device Architecture) technology7, and another one for libgpuarray, which is also developed by the Theano developers in parallel. The libgpuarray library is an interesting alternative for Theano, it's a GPU tensor (multi-dimensional mathematical object) array written in C with Python bindings based on Cython, which has the advantage of running also on OpenCL8. OpenCL, unlike CUDA9, is full free software, vendor neutral and overcomes the limitation of the CUDA toolkit being only available for amd64 and the ppc64el port (see here). I've opened an ITP on libgpuarray and we'll see if and how this works out. Another reason for it would be great to have it available is that it looks like CUDA currently runs into problems with GCC 610. More on that, soon. Here's a litle checklist for setting up your CUDA device so that you don't have to experience something like this:
$ THEANO_FLAGS=device=gpu,floatX=float32 python ./cat_dog_classifier.py 
WARNING (theano.sandbox.cuda): CUDA is installed, but device gpu is not available (error: Unable to get the number of gpus available: no CUDA-capable device is detected)
hardware check For running Theano on CUDA you need an NVIDIA graphics card which is capable of doing that. You can recheck if your device is supported by CUDA here. When the hardware isn't too old (CUDA support started with GeForce 8 and Quadro X series) or too strange I think it isn't working only in exceptional cases. You can check your model and if the device is present in the system on the bare hardware level by doing this:
$ lspci   grep -i nvidia
04:00.0 3D controller: NVIDIA Corporation GM108M [GeForce 940M] (rev a2)
If a line like this doesn't get returned, your device most probably is broken, or not properly connected (ouch). If rev ff appears at the end of the line that means the device is off meaning powered down. This might be happening if you have a laptop with Optimus graphics hardware, and the related drivers have switched off the unoccupied device to safe energy11. kernel module Running CUDA applications requires the proprietary NVIDIA driver kernel module to be loaded into the kernel and working. If you haven't already installed it for another purpose, the NVIDIA driver and the CUDA toolkit are both in the non-free section of the Debian archive, which is not enabled by default. To get non-free packages you have to add non-free (and it's better to do so, also contrib) to your package source in /etc/apt/sources.list, which might then look like this:
deb http://httpredir.debian.org/debian/ testing main contrib non-free
After doing that, perform $ apt-cache update to update the package lists, and there you go with the non-free packages. The headers of the running kernel are needed to compile modules, you can get them together with the NVIDIA kernel module package by running:
$ sudo apt-get install linux-headers-$(uname -r) nvidia-kernel-dkms build-essential
DKMS will then build the NVIDIA module for the kernel and does some other things on the system. When the installation has finished, it's generally advised to reboot the system completely. troubleshooting If you have problems with the CUDA device, it's advised to verify if the following things concerning the NVIDIA driver resp. kernel module are in order: blacklist nouveau Check if the default Nouveau kernel module driver (which blocks the NVIDIA module) for some reason still gets loaded by doing $ lsmod grep nouveau. If nothing gets returned, that's right. If it's still in the kernel, just add blacklist nouveau to /etc/modprobe.d/blacklist.conf, and update the booting ramdisk with sudo update-initramfs -u afterwards. Then reboot once more, this shouldn't be the case then anymore. rebuild kernel module To fix it when the module haven't been properly compiled for some reason you could trigger a rebuild of the NVIDIA kernel module with $ sudo dpkg-reconfigure nvidia-kernel-dkms. When you're about to send your hardware in to repair because everything looks all right but the device just isn't working, that really could help (own experience). After the rebuild of the module or modules (if you have a few kernel packages installed) has completed, you could recheck if the module really is available by running:
$ sudo modinfo nvidia-current
filename:       /lib/modules/4.4.0-1-amd64/updates/dkms/nvidia-current.ko
alias:          char-major-195-*
version:        352.79
supported:      external
license:        NVIDIA
alias:          pci:v000010DEd00000E00sv*sd*bc04sc80i00*
alias:          pci:v000010DEd*sv*sd*bc03sc02i00*
alias:          pci:v000010DEd*sv*sd*bc03sc00i00*
depends:        drm
vermagic:       4.4.0-1-amd64 SMP mod_unload modversions 
parm:           NVreg_Mobile:int
It should be something similiar to this when everything is all right. reload kernel module When there are problems with the GPU, maybe the kernel module isn't properly loaded. You could recheck if the module has been properly loaded by doing
$ lsmod   grep nvidia
nvidia_uvm             73728  0
nvidia               8540160  1 nvidia_uvm
drm                   356352  7 i915,drm_kms_helper,nvidia
The kernel module could be loaded resp. reloaded with $ sudo nvidia-modprobe (that tool is from the package nvidia-modprobe). unsupported graphics card Be sure that you graphics cards is supported by the current driver kernel module. If you have bought new hardware, that's quite possible to come out being a problem. You can get the version of the current NVIDIA driver with:
$ cat /proc/driver/nvidia/version 
NVRM version: NVIDIA UNIX x86_64 Kernel Module 352.79  Wed Jan 13 16:17:53 PST 2016
GCC version:  gcc version 5.3.1 20160528 (Debian 5.3.1-21)
Then, google the version number like nvidia 352.79, this should get you onto an official driver download page like this. There, check for what's to be found under "Supported Products". I you're stuck with that there are two options, to wait until the driver in Debian got updated, or replace it with the latest driver package from NVIDIA. That's possible to do, but something more for experienced users. occupied graphics card The CUDA driver cannot work while the graphical interface is busy like by processing the graphical display of your X.Org server. Which kernel driver actually is used to process the desktop could be examined by this command:12
$ grep '(II).*([0-9]):' /var/log/Xorg.0.log
[    37.700] (II) intel(0): Using Kernel Mode Setting driver: i915, version 1.6.0 20150522
[    37.700] (II) intel(0): SNA compiled: xserver-xorg-video-intel 2:2.99.917-2 (Vincent Cheng <vcheng@debian.org>)
 ... 
[    39.808] (II) intel(0): switch to mode 1920x1080@60.0 on eDP1 using pipe 0, position (0, 0), rotation normal, reflection none
[    39.810] (II) intel(0): Setting screen physical size to 508 x 285
[    67.576] (II) intel(0): EDID vendor "CMN", prod id 5941
[    67.576] (II) intel(0): Printing DDC gathered Modelines:
[    67.576] (II) intel(0): Modeline "1920x1080"x0.0  152.84  1920 1968 2000 2250  1080 1083 1088 1132 -hsync -vsync (67.9 kHz eP)
This example shows that the rendering of the desktop is performed by the graphical device of the Intel CPU, which is just like it's needed for running CUDA applications on your NVIDIA graphics card, if you don't have another one. nvidia-cuda-toolkit With the Debian package of the CUDA toolkit everything pretty much runs out of the box for Theano. Just install it with apt-get, and you're ready to go, the CUDA backend is the default one. Pycuda is also a suggested dependency of the binary packages, it could be pulled together with the CUDA toolkit. The up-to-date CUDA release 7.5 is of course available, with that you have Maxwell architecture support so that you can run Theano on e.g. a GeForce GTX Titan X with 6,2 TFLOPS on single precision13 at an affordable price. CUDA 814 is around the corner with support for the new Pascal architecture15. Like the GeForce GTX 1080 high-end gaming graphics card already has 8,23 TFLOPS16. When it comes to professional GPGPU hardware like the Tesla P100 there is much more computational power available, scalable by multiplication of cores resp. cards up to genuine little supercomputers which fit on a desk, like the DGX-117. Theano can use multiple GPUs for calculations to work with highly scaled hardware, I'll write another blog post on this issue. Theano on the GPU It's not difficult to run Theano on the GPU. Only single precision floating point numbers (float32) are supported on the GPU, but that is sufficient for deep learning applications. Theano uses double precision floats (float64) by default, so you have to set the configuration variable config.floatX to float32, like written on above, either with the THEANO_FLAGS environment variable or better in your .theanorc file, if you're going to use the GPU a lot. Switching to the GPU actually happens with the config.device configuration variable, which must be set to either gpu or gpu0, gpu1 etc., to choose a particular one if multiple devices are available. Here's is a little test script check1.py, it's taken from the docs and slightly altered. You can run that script either with python or python3 (there was a single test failure on the Python 3 package, so the Python 2 library might be a little more stable currently). For comparison, here's an example on how it perfoms on my hardware, one time on the CPU, one more time on the GPU:
$ THEANO_FLAGS=floatX=float32 python ./check1.py 
[Elemwise exp,no_inplace (<TensorType(float32, vector)>)]
Looping 1000 times took 4.481719 seconds
Result is [ 1.23178029  1.61879337  1.52278066 ...,  2.20771813  2.29967761
  1.62323284]
Used the cpu
$ THEANO_FLAGS=floatX=float32,device=gpu python ./check1.py 
Using gpu device 0: GeForce 940M (CNMeM is disabled, cuDNN not available)
[GpuElemwise exp,no_inplace (<CudaNdarrayType(float32, vector)>), HostFromGpu(GpuElemwise exp,no_inplace .0)]
Looping 1000 times took 1.164906 seconds
Result is [ 1.23178029  1.61879349  1.52278066 ...,  2.20771813  2.29967761
  1.62323296]
Used the gpu
If you got a result like this you're ready to go with Theano on Debian, training computer vision classifiers or whatever you want to do with it. I'll write more on for what Theano could be used, soon.

  1. Some ports are disabled because they are currently not supported by Theano. There are NotImplementedErrors and other errors in the tests on the numpy.ndarray object being not aligned. The developers commented on that, see here. And on some ports the build flags -m32 resp. -m64 of Theano aren't supported by g++, the build flags can't be manipulated easily.
  2. Theano Development Team: "Theano: a Python framework for fast computation of mathematical expressions"
  3. Marc Couture: "Today's high-powered GPUs: strong for graphics and for maths". In: RTC magazine June 2015, pp. 22 25
  4. Ogier Maitre: "Understanding NVIDIA GPGPU hardware". In: Tsutsui/Collet (eds.): Massively parallel evolutionary computation on GPGPUs. Berlin, Heidelberg: Springer 2013, pp. 15-34
  5. Geoffrey French: "Deep learing tutorial: advanved techniques". PyData London 2016 presentation
  6. Like the description of the Lintian tag binary-without-manpage says, that's not needed for them being in /usr/share.
  7. Tom. R. Halfhill: "Parallel processing with CUDA: Nvidia's high-performance computing platform uses massive multithreading". In: Microprocessor Report January 28, 2008
  8. Faber et.al: "Parallelwelten: GPU-Programmierung mit OpenCL". In: C't 26/2014, pp. 160-165
  9. For comparison, see: Valentine Sinitsyn: "Feel the taste of GPU programming". In: Linux Voice February 2015, pp. 106-109
  10. https://lists.debian.org/debian-devel/2016/07/msg00004.html
  11. If Optimus (hybrid) graphics hardware is present (like commonly today on PC laptops), Debian launches the X-server on the graphics processing unit of the CPU, which is ideal for CUDA. The problem with Optimus actually is the graphics processing on the dedicated GPU. If you are using Bumblebee, the Python interpreter which you want to run Theano on has be to be started with the launcher primusrun, because Bumblebee powers the GPU down with the tool bbswitch every time it isn't used, and I think also the kernel module of the driver is dynamically loaded.
  12. Thorsten Leemhuis: "Treiberreviere. Probleme mit Grafiktreibern f r Linux l sen": In: C't Nr.2/2013, pp. 156-161
  13. Martin Fischer: "4K-Rakete: Die schnellste Single-GPU-Grafikkarte der Welt". In C't 13/2015, pp. 60-61
  14. http://www.heise.de/developer/meldung/Nvidia-CUDA-8-bringt-Optimierungen-fuer-die-Pascal-Architektur-3164254.html
  15. Martin Fischer: "All In: Nvidia enth llt die GPU-Architektur 'Pascal'". In: C't 9/2016, pp. 30-31
  16. Martin Fischer: "Turbo-Pascal: High-End-Grafikkarte f r Spieler: GeForce GTX 1080". In: C't 13/2016, pp. 100-103
  17. http://www.golem.de/news/dgx-1-nvidias-supercomputerchen-mit-8x-tesla-p100-1604-120155.html

19 July 2016

Dirk Eddelbuettel: Rcpp 0.12.6: Rolling on

The sixth update in the 0.12.* series of Rcpp has arrived on the CRAN network for GNU R a few hours ago, and was just pushed to Debian. This 0.12.6 release follows the 0.12.0 release from late July, the 0.12.1 release in September, the 0.12.2 release in November, the 0.12.3 release in January, the 0.12.4 release in March, and the 0.12.5 release in May --- making it the tenth release at the steady bi-montly release frequency. Just like the previous release, this one is once again more of a refining maintenance release which addresses small bugs, nuisances or documentation issues without adding any major new features. That said, some nice features (such as caching support for sourceCpp() and friends) were added. Rcpp has become the most popular way of enhancing GNU R with C or C++ code. As of today, 703 packages on CRAN depend on Rcpp for making analytical code go faster and further. That is up by about fourty packages from the last release in May! Similar to the previous releases, we have contributions from first-time committers. Artem Klevtsov made na_omit run faster on vectors without NA values. Otherwise, we had many contributions from "regulars" like Kirill Mueller, James "coatless" Balamuta and Dan Dillon as well as from fellow Rcpp Core contributors. Some noteworthy highlights are encoding and string fixes, generally more robust builds, a new iterator-based approach for vectorized programming, the aforementioned caching for sourceCpp(), and several documentation enhancements. More details are below.
Changes in Rcpp version 0.12.6 (2016-07-18)
  • Changes in Rcpp API:
    • The long long data type is used only if it is available, to avoid compiler warnings (Kirill M ller in #488).
    • The compiler is made aware that stop() never returns, to improve code path analysis (Kirill M ller in #487 addressing issue #486).
    • String replacement was corrected (Qiang in #479 following mailing list bug report by Masaki Tsuda)
    • Allow for UTF-8 encoding in error messages via RCPP_USING_UTF8_ERROR_STRING macro (Qin Wenfeng in #493)
    • The R function Rf_warningcall is now provided as well (as usual without leading Rf_) (#497 fixing #495)
  • Changes in Rcpp Sugar:
    • Const-ness of min and max functions has been corrected. (Dan Dillon in PR #478 fixing issue #477).
    • Ambiguities for matrix/vector and scalar operations have been fixed (Dan Dillon in PR #476 fixing issue #475).
    • New algorithm header using iterator-based approach for vectorized functions (Dan in PR #481 revisiting PR #428 and addressing issue #426, with futher work by Kirill in PR #488 and Nathan in #503 fixing issue #502).
    • The na_omit() function is now faster for vectors without NA values (Artem Klevtsov in PR #492)
  • Changes in Rcpp Attributes:
    • Add cacheDir argument to sourceCpp() to enable caching of shared libraries across R sessions (JJ in #504).
    • Code generation now deals correctly which packages containing a dot in their name (Qiang in #501 fixing #500).
  • Changes in Rcpp Documentation:
    • A section on default parameters was added to the Rcpp FAQ vignette (James Balamuta in #505 fixing #418).
    • The Rcpp-attributes vignette is now mentioned more prominently in question one of the Rcpp FAQ vignette.
    • The Rcpp Quick Reference vignette received a facelift with new sections on Rcpp attributes and plugins begin added. (James Balamuta in #509 fixing #484).
    • The bib file was updated with respect to the recent JSS publication for RProtoBuf.
Thanks to CRANberries, you can also look at a diff to the previous release. As always, even fuller details are on the Rcpp Changelog page and the Rcpp page which also leads to the downloads page, the browseable doxygen docs and zip files of doxygen output for the standard formats. A local directory has source and documentation too. Questions, comments etc should go to the rcpp-devel mailing list off the R-Forge page.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

6 July 2016

Mike Gabriel: [Arctica Project] Release of nx-libs (version 3.5.99.0)

Introduction NX is a software suite which implements very efficient compression of the X11 protocol. This increases performance when using X applications over a network, especially a slow one. NX (v3) has been originally developed by NoMachine and has been Free Software ever since. Since NoMachine obsoleted NX (v3) some time back in 2013/2014, the maintenance has been continued by a versatile group of developers. The work on NX (v3) is being continued under the project name "nx-libs". History Until January 2015, nx-libs was more mainly a redistribution approach of the original NX (v3) software. We (we as in mainly a group of X2Go developers) kept changes applied to the original NoMachine sources as minimal as possible. We also kept the original files and folders structure. Patches had been maintained via the quilt utility on top of a Git repository, the patches had always been kept separate. That was the 3.5.0.x series of nx-libs. In January 2015, the characteristics of nx-libs as maintained by the X2Go project between 2011 and 2015 changed. A decision was reached: This effort is now about to be released as "nx-libs 3.6.0.0". Contributors Since 2011, the nx-libs code base has to a great extent been maintained in the context of the X2Go Project [1]. Qindel Group joining in... In 2014, developers from the Qindel Group [2] joined the nx-libs maintenance. They found X2Go's work on nx-libs and suggested joining forces as best as possible on hacking nx-libs. The Arctica Project comming up... Starting in January 2015, the development on the 3.6.x branch of the project was moved into a new project called the Arctica Project [3]. Development Funding by Qindel In September 2015, a funding project was set up at Qindel. Since then, the Qindel group greatly supports the development of nx-libs 3.6.x monetarily and with provided man power. The funding project officially is a cooperation between Qindel and DAS-NETZWERKTEAM (business run by Mike Gabriel, long term maintainer of nx-libs). The funding is split into two subprojects and lasts until August 2017: The current nx-libs development effort is coordinated in the context of the Arctica Project (by Mike Gabriel), with use cases in Arctica, X2Go and TheQVD (VDI product worked on at Qindel) in mind. People involved There are various people involved in nx-libs 3.6.x maintenance and development, some of them shall be explicitly named here (in alphabetical order of surnames): Some other people have contributed, but have left the project already. Thanks for your work on nx-libs: A big thanks to everyone involved!!! Special thanks go to Stefan Baur for employing Mihai Moldovan and handling all the bureaucracy, so that Mihai can work on this project and get funded for his work. Achievements of nx-libs 3.5.99.0 We are very close to our self-defined release goal 3.6.0. The below tasks have already been (+/-) completed for version 3.5.99.0: In a previous blog post [4], the code reduction in nx-libs has already been discussed. With this announcement, we want to give a status update about our effort of shrinking the nx-libs code base:
    [mike@minobo nx-libs (3.6.x)]$ cloc --match-f '.*\.(c cpp h)' .
        1896 text files.
        1896 unique files.                                          
        7430 files ignored.
    http://cloc.sourceforge.net v 1.60  T=5.88 s (307.3 files/s, 143310.5 lines/s)
    -------------------------------------------------------------------------------
    Language                     files          blank        comment           code
    -------------------------------------------------------------------------------
    C                              958          68574          74891         419638
    C/C++ Header                   730          25683          33957         130418
    C++                            120          17007          11721          61292
    -------------------------------------------------------------------------------
    SUM:                          1808         111264         120569         611348
    -------------------------------------------------------------------------------
The previous statistics had these sums in the last line. First the nx-libs 3.5.0.x code tree (where we came from):
    -------------------------------------------------------------------------------
    SUM:                          5614         329279         382337        1757743
    -------------------------------------------------------------------------------
Then the nx-libs 3.6.x status as it was on May 9th 2016:
    -------------------------------------------------------------------------------
    SUM:                          1922         118581         126783         662635
    -------------------------------------------------------------------------------
Another 50.000 lines of code have been removed over the past two months. Work pending for the final 3.6.0 release goal Known Issues There are several open issues on the nx-libs Github project space, see https://github.com/ArcticaProject/nx-libs/issues. Testing the nx-libs 3.5.99.0 We are currently working on provisioning release builds and nightly builds of nx-libs for various recent Linux distributions. Please stay tuned and watch Mike Gabriel's blog [5]. We already have nightly builds of nx-libs for Debian and Ubuntu [6], but there are more to come soon. Until now, please use the build recipes provided in the README.md file of the nx-libs source tree [7]. References

5 July 2016

Joachim Breitner: HaL deadline extended

There is this long-running workshop series Haskell in Leipzig, which is a meeting of all kinds of Haskell-interested folks (beginners, experts, developers, scientists), and for year s instance, HaL 2016, I have the honour of being the program committee chair. The original deadline passed last week, and after looking through the submissions it became clear that although the quality was good, the quantitiy was still lacking. I therefore extended the submission deadline by two weeks, until July 15th. So if you have something worth talking about, please do submit a proposal1 and come to Leipzig!. Why should you submit here? Because it gives you a platform to talk about your ideas to an audience that usually does not consist just of your fellow speakers, as it is often with purely academic workshops, but real listeners of various kinds. And it is a fun event. And why should you come to Leipzig? Because of all the interesting talks and tutorials! Of course I cannot say a lot here yet, besides that our invited speaker Alejandro Russo from Chalmers and Gothenburg University will present his work on information-flow control in Haskell (i.e., SecLib, LIO, MAC, HLIO).

  1. And if you want to save me from sleepless nights, submit the first version a few days before the deadline

3 July 2016

Daniel Stender: My work for Debian in June

At least a little much more time lst month for helping to improve the operating system we're working on. I've worked on a couple of package updates, mostly they are for PAPT, DPMT, Debian Science, or pkg-go (in order of completion): New packages: Sponsored Uploads: Again some further ahead with these ones. My "new package of the month" is going to be Theano. I'm still working on the introduction, it'll come hereafter very soon.

1 July 2016

Joachim Breitner: When to reroll a six

This is a story about counter-intuitive probabilities and how a small bit of doubt turned out to be very justified. It begins with the game To Court the King (German: Um Krone und Kragen ). It is a nice game with dice and cards, where you start with a few dice, and use your dice rolls to buy additional cards, which give you extra dice or special powers to modify the dice that you rolled. You can actually roll your dice many times, but every time, you have to set aside at least one die, which you can no longer change or reroll, until eventually all dice have been set aside. A few years ago, I have played this game a lot, both online (on yucata.de) as well as in real life. It soon became apparent that it is almost always better to go for the cards that give you an extra die, instead of those that let you modify the dice. Intuitively, this is because every additional die allows you to re-roll your dice once more. I concluded that if I have a certain number of dice (say, n), and I want to have a sum as high as possible at the end, then it may make sense to reroll as many dice as possible, setting aside only those showing a 6 (because that is the best you can get) or, if there is no dice showing a 6, then a single die with the best score. Besides for small number of dice (2 or 3), where even a 4 or 5 is worth keeping, this seemed to be a simple, obvious and correct strategy to maximize the expected outcome of this simplified game. It is definitely simple and obvious. But some doubt that it was correct remained. Having one more die still in the game (i.e. not set aside) definitely improves your expected score, because you can reroll the dice more often. How large is this advantage? What if it ever exceeds 6 then it would make sense to reroll a 6. The thought was strange, but I could not dismiss it. So I did what one does these days if one has a question: I posed it on the mathematics site of StackExchange. That was January 2015, and nothing happened. I tried to answer it myself a month later, or at least work towards at an answer, and did that by brute force. Using a library for probabilistic calculations for Haskell I could write some code that simply calculated the various expected values of n dice for up to n = 9 (beyond that, my unoptimized code would take too long):
1:  3.50000 (+3.50000)
2:  8.23611 (+4.73611)
3: 13.42490 (+5.18879)
4: 18.84364 (+5.41874)
5: 24.43605 (+5.59241)
6: 30.15198 (+5.71592)
7: 35.95216 (+5.80018)
8: 41.80969 (+5.85753)
9: 47.70676 (+5.89707)
Note that this calculation, although printed as floating point numbers, is performed using fractions of unbounded integers, so there are no rounding issues that could skew the result. The result supported the hypothesis that there is no point in rolling a 6 again: The value of an additional die grows and approaches 6 from beyond, but judging from these number is never going to reach it. Then again nothing happened. Until 14 month later, when some Byron Schmuland came along, found this an interesting puzzle, and set out a 500 point bounty to whoever solved this problem. This attracted a bit attention, and a few not very successful attempts at solving this. Eventually it reached twitter, where Roman Cheplyaka linked to it. Coincidally a day later some joriki came along, and he had a very good idea: Why not make our life easier and think about dice with less sides, and look at 3 instead of 6. This way, and using a more efficient implementation (but still properly using rationals), he could do a similar calculation for up to 50 dice. And it was very lucky that he went to 50, and not just 25, because up to 27, the results were very much as expected, approaching value of +3 from below. But then it surpassed +3 and became +3.000000008463403. In other words: If you have roll 28 dice, and you have exactly two dice showing a 3, then it gives you better expected score if you set aside only one 3, and not both of them. The advantage is minuscule, but that does not matter it is there. From then on, the results behaved strangely. Between 28 and 34, the additional value was larger than 3. Then, from 35 on again lower than 2. It oscillated. Something similar could be observed when the game is played with coins. Eventually, joriki improved his code and applied enough tricks so that he could solve it also for the 6-sided die: The difference of the expected value of 198 dice and having 199 dice is larger than 6 (by 10 21...)! The optimizations that allowed him to calculate these numbers in a reasonable amount of time unfortunately was to assume that my original hypothesis (never rerolling a 6 is optimal), which held until n < 199. But this meant that for n > 199, the code did not yield correct results. What is the rationale of the story? Don t trust common sense when it comes to statistics; don t judge a sequence just from a few initial numbers; if you have an interesting question, post it online and wait for 16 months.

Rapha&#235;l Hertzog: My Free Software Activities in June 2016

My monthly report covers a large part of what I have been doing in the free software world. I write it for my donators (thanks to them!) but also for the wider Debian community because it can give ideas to newcomers and it s one of the best ways to find volunteers to work with me on projects that matter to me. Debian packaging Django and Python. I uploaded Django 1.9.7 and filed an upstream ticket (#26755) for a failure seen in its DEP-8 tests. I packaged/sponsored python-django-modeltranslation and python-paypal. I opened a pull request on model-translation to fix failing tests in the Debian package build. I packaged a new python-django-jsonfield (1.0.0), filed a bug and discovered some regression in its PostgreSQL support. I helped on the upstream ticket and I have been granted commit rights. I used this opportunity to do some bug triage and push a few fixes. I also discussed the future of the module and ended up starting a discussion on Django s developer list about the possibility to add a JSONField to the core. CppUTest. I uploaded a new upstream version (3.8) with more than a year of work. I found out that make install does not install a required header so I opened a ticket with a patch. The package ended up not compiling on quite a few architectures so I opened a ticket and prepared a fix for some of those failures with the help of the upstream developers. I also added a DEP-8 tests after having uploaded a broken (untested) package systemd support in net-snmp and postfix. I worked on adding native systemd service units to net-snmp (#782243) and postfix (#715188). In both cases, the maintainers have not been very reactive so far so I uploaded my changes as delayed NMU. pkg-security team. The team that I started quietly a few months ago is now growing, both with new members and new packages. I created the required Teams/pkg-security wiki page. I sponsored xprobe, hydra, made an upload of medusa to merge Kali changes into Debian (and at the same time submitting the patch to upstream). fontconfig. After having read Jonathan McDowell s analysis of a bug that I experienced multiple times (and that many Kali users had too), I opened bug #828037 to get it fixed once for all. Unfortunately, nothing happened yet. DebConf 16 I spent some time to prepare the 2 talks and the BoF that I will give/manage in Cape Town next week: Distro Tracker I continued to mentor Vladimir Likic who managed to finish his first patch. He is now working on documentation for new contributors based on his recent experience. I enhanced the tox configuration to run tests with Django 1.8 LTS with fatal warnings (python -Werror) so as to ensure that I m not relying on any deprecated feature and so that I can be sure that the codebase will work on the next Django LTS release (1.11). Thanks to this, I did discover quite a few places where I have been using deprecated API and I fixed them all (the JSONField update to 1.0.0 I mentionned above was precisely to fix such a warning). I also fixed a few more issues with folded mail headers that you can t inject back in a new Message object and with messages lacking the subject field. All those have been caught through real (spam) email generating exceptions wich are then mailed to me. Kali related work I uploaded a new live-boot (5.20160608) to Debian to fix a bug where the boot process was blocking on some timeout. I forwarded a Kali bug against libatk-wrapper-java (#827741) which turned out to be an OpenJDK bug. I filed #827749 against reprepro to request a way to remove selected internal file references. This is required if you want to be able to make a file disappear and if that file is part of a snapshot that you want to keep despite this. But in truth, my real need is to be able to replace the .orig.tar.gz used by Kali by the orig.tar.gz used by Debian those conflicts break the mirroring/import script. Salt I have been using salt to deploy a new service, and I developed patches for a few issues in salt formulas. I also created a new letsencrypt-sh formula to manage TLS certificates with the letsencrypt.sh ACME client. Thanks See you next month for a new summary of my activities.

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30 June 2016

Chris Lamb: Free software activities in June 2016

Here is my monthly update covering a large part of what I have been doing in the free software world (previously):
Debian My work in the Reproducible Builds project was covered in our weekly reports. (#58, #59 & #60)
Debian LTS

This month I have been paid to work 18 hours on Debian Long Term Support (LTS). In that time I did the following:
  • "Frontdesk" duties, triaging CVEs, etc.
  • Extended the lts-cve-triage.py script to ignore packages that are not subject to Long Term Support.

  • Issued DLA 512-1 for mantis fixing an XSS vulnerability.
  • Issued DLA 513-1 for nspr correcting a buffer overflow in a sprintf utility.
  • Issued DLA 515-1 for libav patching a memory corruption issue.
  • Issued DLA 524-1 for squidguard fixing a reflected cross-site scripting vulnerability.
  • Issued DLA 525-1 for gimp correcting a use-after-free vulnerability in the channel and layer properties parsing process.

Uploads
  • redis (2:3.2.1-1) New upstream bugfix release, plus subsequent upload to the backports repository.
  • python-django (1.10~beta1-1) New upstream experimental release.
  • libfiu (0.94-5) Misc packaging updates.


RC bugs

I also filed 170 FTBFS bugs against a7xpg, acepack, android-platform-dalvik, android-platform-frameworks-base, android-platform-system-extras, android-platform-tools-base, apache-directory-api, aplpy, appstream-generator, arc-gui-clients, assertj-core, astroml, bamf, breathe, buildbot, cached-property, calf, celery-haystack, charmtimetracker, clapack, cmake, commons-javaflow, dataquay, dbi, django-celery, django-celery-transactions, django-classy-tags, django-compat, django-countries, django-floppyforms, django-hijack, django-localflavor, django-markupfield, django-model-utils, django-nose, django-pipeline, django-polymorphic, django-recurrence, django-sekizai, django-sitetree, django-stronghold, django-taggit, dune-functions, elementtidy, epic4-help, fcopulae, fextremes, fnonlinear, foreign, fort77, fregression, gap-alnuth, gcin, gdb-avr, ggcov, git-repair, glance, gnome-twitch, gnustep-gui, golang-github-audriusbutkevicius-go-nat-pmp, golang-github-gosimple-slug, gprbuild, grafana, grantlee5, graphite-api, guacamole-server, ido, jless, jodreports, jreen, kdeedu-data, kdewebdev, kwalify, libarray-refelem-perl, libdbusmenu, libdebian-package-html-perl, libdevice-modem-perl, libindicator, liblrdf, libmail-milter-perl, libopenraw, libvisca, linuxdcpp, lme4, marble, mgcv, mini-buildd, mu-cade, mvtnorm, nose, octave-epstk, onioncircuits, opencolorio, parsec47, phantomjs, php-guzzlehttp-ringphp, pjproject, pokerth, prayer, pyevolve, pyinfra, python-asdf, python-ceilometermiddleware, python-django-bootstrap-form, python-django-compressor, python-django-contact-form, python-django-debug-toolbar, python-django-extensions, python-django-feincms, python-django-formtools, python-django-jsonfield, python-django-mptt, python-django-openstack-auth, python-django-pyscss, python-django-registration, python-django-tagging, python-django-treebeard, python-geopandas, python-hdf5storage, python-hypothesis, python-jingo, python-libarchive-c, python-mhash, python-oauth2client, python-proliantutils, python-pytc, python-restless, python-tidylib, python-websockets, pyvows, qct, qgo, qmidinet, quodlibet, r-cran-gss, r-cran-runit, r-cran-sn, r-cran-stabledist, r-cran-xml, rgl, rglpk, rkt, rodbc, ruby-devise-two-factor, ruby-json-schema, ruby-puppet-syntax, ruby-rspec-puppet, ruby-state-machine, ruby-xmlparser, ryu, sbd, scanlogd, signond, slpvm, sogo, sphinx-argparse, squirrel3, sugar-jukebox-activity, sugar-log-activity, systemd, tiles, tkrplot, twill, ucommon, urca, v4l-utils, view3dscene, xqilla, youtube-dl & zope.interface.

FTP Team

As a Debian FTP assistant I ACCEPTed 186 packages: akonadi4, alljoyn-core-1509, alljoyn-core-1604, alljoyn-gateway-1504, alljoyn-services-1504, alljoyn-services-1509, alljoyn-thin-client-1504, alljoyn-thin-client-1509, alljoyn-thin-client-1604, apertium-arg, apertium-arg-cat, apertium-eo-fr, apertium-es-it, apertium-eu-en, apertium-hbs, apertium-hin, apertium-isl, apertium-kaz, apertium-spa, apertium-spa-arg, apertium-tat, apertium-urd, arc-theme, argus-clients, ariba, beast-mcmc, binwalk, bottleneck, colorfultabs, dh-runit, django-modeltranslation, dq, dublin-traceroute, duktape, edk2, emacs-pdf-tools, eris, erlang-p1-oauth2, erlang-p1-sqlite3, erlang-p1-xmlrpc, faba-icon-theme, firefox-branding-iceweasel, golang-1.6, golang-defaults, golang-github-aelsabbahy-gonetstat, golang-github-howeyc-gopass, golang-github-oleiade-reflections, golang-websocket, google-android-m2repository-installer, googler, goto-chg-el, gr-radar, growl-for-linux, guvcview, haskell-open-browser, ipe, labplot, libalt-alien-ffi-system-perl, libanyevent-fcgi-perl, libcds-savot-java, libclass-ehierarchy-perl, libconfig-properties-perl, libffi-checklib-perl, libffi-platypus-perl, libhtml-element-library-perl, liblwp-authen-oauth2-perl, libmediawiki-dumpfile-perl, libmessage-passing-zeromq-perl, libmoosex-types-portnumber-perl, libmpack, libnet-ip-xs-perl, libperl-osnames-perl, libpodofo, libprogress-any-perl, libqtpas, librdkafka, libreoffice, libretro-beetle-pce-fast, libretro-beetle-psx, libretro-beetle-vb, libretro-beetle-wswan, libretro-bsnes-mercury, libretro-mupen64plus, libservicelog, libtemplate-plugin-datetime-perl, libtext-metaphone-perl, libtins, libzmq-ffi-perl, licensecheck, link-grammar, linux, linux-signed, lua-busted, magics++, mkalias, moka-icon-theme, neutron-vpnaas, newlisp, node-absolute-path, node-ejs, node-errs, node-has-flag, node-lodash-compat, node-strip-ansi, numba, numix-icon-theme, nvidia-graphics-drivers, nvidia-graphics-drivers-legacy-304xx, nvidia-graphics-drivers-legacy-340xx, obs-studio, opencv, pacapt, pgbackrest, postgis, powermock, primer3, profile-sync-daemon, pyeapi, pypandoc, pyssim, python-cutadapt, python-cymruwhois, python-fisx, python-formencode, python-hkdf, python-model-mommy, python-nanomsg, python-offtrac, python-social-auth, python-twiggy, python-vagrant, python-watcherclient, python-xkcd, pywps, r-bioc-deseq2, r-bioc-dnacopy, r-bioc-ensembldb, r-bioc-geneplotter, r-cran-adegenet, r-cran-adephylo, r-cran-distory, r-cran-fields, r-cran-future, r-cran-globals, r-cran-htmlwidgets, r-cran-listenv, r-cran-mlbench, r-cran-mlmrev, r-cran-pheatmap, r-cran-pscbs, r-cran-r.cache, refind, relatorio, reprotest, ring, ros-ros-comm, ruby-acts-as-tree, ruby-chronic-duration, ruby-flot-rails, ruby-numerizer, ruby-u2f, selenium-firefoxdriver, simgrid, skiboot, smtpping, snap-confine, snapd, sniffles, sollya, spin, subuser, superlu, swauth, swift-plugin-s3, syncthing, systemd-bootchart, tdiary-theme, texttable, tidy-html5, toxiproxy, twinkle, vmtk, wait-for-it, watcher, wcslib & xapian-core.

21 June 2016

Reproducible builds folks: Reproducible builds: week 60 in Stretch cycle

What happened in the Reproducible Builds effort between June 12th and June 18th 2016: Media coverage GSoC and Outreachy updates Weekly reports by our participants: Toolchain fixes With this upload of texlive-bin we decided to stop keeping our patched fork of as most of the patches for SOURCE_DATE_EPOCH support had been integrated upstream already, and the last one (making FORCE_SOURCE_DATE default to 1) had been refused. So, we are now going to let the archive be rebuilt against unstable's texlive-bin and see how many packages will become unreproducible with this change; once enough data will be collected we will ponder whether FORCE_SOURCE_DATE should be exported by helper tools (such as debhelper) or manually exported by every package that needs it. (For those wondering: we still recommend to follow SOURCE_DATE_EPOCH always and don't recommend other projects to implement FORCE_SOURCE_DATE ) With the drop of texlive-bin we now have only three modified packages in our experimental repository. Reproducible work in other projects Packages fixed The following 12 packages have become reproducible due to changes in their build dependencies: django-floppyforms flask-restful hy jets3t kombu llvm-toolchain-3.8 moap python-bottle python-debtcollector python-django-debug-toolbar python-osprofiler stevedore The following packages have become reproducible after being fixed: Some uploads have fixed some reproducibility issues, but not all of them: Uploads with reproducibility fixes that currently fail to build: Patches submitted that have not made their way to the archive yet: Package reviews 36 reviews have been added, 12 have been updated and 31 have been removed in this week. 17 FTBFS bugs have been reported by Chris Lamb, Santiago Vila and Dominic Hargreaves. diffoscope development Satyam worked on argument completion (#826711) for diffoscope. strip-nondeterminism development Mattia Rizzolo uploaded strip-nondeterminism 0.019-1~bpo8+1 to jessie-backports. reprotest development Ceridwen filed an Intent To Package (ITP) bug for reprotest as #827293. tests.reproducible-builds.org Misc. This week's edition was written by Mattia Rizzolo, Reiner Herrmann, Ed Maste and Holger Levsen and reviewed by a bunch of Reproducible builds folks on IRC.

15 June 2016

Russ Allbery: Review: Matter

Review: Matter, by Iain M. Banks
Publisher: Orbit
Copyright: February 2008
ISBN: 0-316-00536-3
Format: Hardcover
Pages: 593
Sursamen is an Arithmetic, Mottled, Disputed, Multiply Inhabited, Multi-million Year Safe, and Godded Shellworld. It's a constructed world with multiple inhabitable levels, each lit by thermonuclear "suns" on tracks, each level supported above the last by giant pillars. Before the recorded history of the current Involved Species, a culture called the Veil created the shellworlds with still-obscure technology for some unknown purpose, and then disappeared. Now, they're inhabited by various transplants and watched over by a hierarchy of mentor and client species. In the case of Sursamen, both the Aultridia and the Oct claim jurisdiction (hence "Disputed"), and are forced into an uneasy truce by the Nariscene, a more sophisticated species that oversees them both. On Sursamen, on level eight to be precise, are the Sarl, a culture with an early industrial level of technology in the middle of a war of conquest to unite their level (and, they hope, the next level down). Their mentors are the Oct, who claim descendance from the mysterious Veil. The Deldeyn, the next level down, are mentored by the Aultridia, a species that evolved from a parasite on Xinthian Tensile Aranothaurs. Since a Xinthian, treated by the Sarl as a god, lives in the heart of Sursamen (hence "Godded"), tensions between the Sarl and the Aultridians run understandably high. The ruler of the Sarl had three sons and a daughter. The oldest was killed by the people he is conquering as Matter starts. The middle son is a womanizer and a fop who, as the book opens, watches a betrayal that he's entirely unprepared to deal with. The youngest is a thoughtful, bookish youth pressed into a position that he also is not well-prepared for. His daughter left the Sarl, and Sursamen itself, fifteen years previously. Now, she's a Special Circumstances agent for the Culture. Matter is the eighth Culture novel, although (like most of the series) there's little need to read the books in any particular order. The introduction to the Culture here is a bit scanty, so you'll have more background and understanding if you've read the previous novels, but it doesn't matter a great deal for the story. Sharp differences in technology levels have turned up in previous Culture novels (although the most notable example is a minor spoiler), but this is the first Culture novel I recall where those technological differences were given a structure. Usually, Culture novels have Special Circumstances meddling in, from their perspective, "inferior" cultures. But Sursamen is not in Culture space or directly the Culture's business. The Involved Species that governs Sursamen space is the Morthanveld: an aquatic species roughly on a technology level with the Culture themselves. The Nariscene are their client species; the Oct and Aultridia are, in turn, client species (well, mostly) of the Nariscene, while meddling with the Sarl and Deldeyn. That part of this book reminded me of Brin's Uplift universe. Banks's Involved Species aren't the obnoxious tyrants of Brin's universe, and mentoring doesn't involve the slavery of the Uplift universe. But some of the politics are a bit similar. And, as with Uplift, all the characters are aware, at least vaguely, of the larger shape of galactic politics. Even the Sarl, who themselves have no more than early industrial technology. When Ferbin flees the betrayal to try to get help, he ascends out of the shellworld to try to get assistance from an Involved species, or perhaps his sister (which turns out to be the same thing). Banks spends some time here, mostly through Ferbin and his servant (who is one of the better characters in this book), trying to imagine what it would be like to live in a society that just invented railroads while being aware of interstellar powers that can do practically anything. The plot, like the world on which it's set, proceeds on multiple levels. There is court intrigue within the Sarl, war on their level and the level below, and Ferbin's search for support and then justice. But the Sarl live in an artifact with some very mysterious places, including the best set piece in the book: an enormous waterfall that's gradually uncovering a lost city on the level below the Sarl, and an archaeological dig that proceeds under the Deldeyn and Sarl alike. Djan Seriy decides to return home when she learns of events in Sarl, originally for reasons of family loyalty and obligation, but she's a bit more in touch with the broader affairs of the galaxy, including the fact that the Oct are acting very strangely. There's something much greater at stake on Sursamen than tedious infighting between non-Involved cultures. As always with Banks, the set pieces and world building are amazing, the scenery is jaw-dropping, and I have some trouble warming to the characters. Dramatic flights across tower-studded landscapes seeking access to forbidden world-spanning towers largely, but don't entirely, make up for not caring about most of the characters for most of the book. This did change, though: although I never particularly warmed to Ferbin, I started to like his younger brother, and I really liked his sister and his servant by the end of the book. Unfortunately, the end of Matter is, if not awful, at least exceedingly abrupt. As is typical of Banks, we get a lot of sense of wonder but not much actual explanation, and the denouement is essentially nonexistent. (There is a coy epilogue hiding after the appendices, but it mostly annoyed me and provides only material for extrapolation about the characters.) Another SF author would have written a book about the Xinthian, the Veil, the purpose of the shellworlds, and the deep history of the galaxy. I should have known going in that Banks isn't that sort of SF author, but it was still frustrating. Still, Banks is an excellent writer and this is a meaty, complex, enjoyable story with some amazing moments of wonder and awe. If you like Culture novels in general, you will like this. If you like set-piece-heavy SF on a grand scale, such as Alastair Reynolds or Kim Stanley Robinson, you probably like this. Recommended. Rating: 8 out of 10

6 June 2016

Carl Chenet: My Free Activities in May 2015

Follow me also on Diaspora*diaspora-banner or Twitter Trying to catch up with my blog posts about My Free Activities. This blog post will tell you about my free activities from January to May 2016. 1. Personal projects 2. Journal du hacker That s all folks! See you next month!

2 June 2016

Rapha&#235;l Hertzog: My Free Software Activities in May 2016

My monthly report covers a large part of what I have been doing in the free software world. I write it for my donators (thanks to them!) but also for the wider Debian community because it can give ideas to newcomers and it s one of the best ways to find volunteers to work with me on projects that matter to me. Debian LTS Due to some departure and increased workload, I wanted to find out a few new paid contributors for Debian LTS. So I sent a mail to debian-jobs@lists.debian.org and contrary to last time (where I posted the announce only here on my blog), I had plenty of replies I ended up enrolling 6 new contributors and refusing 3 persons that did not have the required profile. All new contributors are supposed to handle at least one LTS update on their free time to get up to speed. But from the 6 new contributors only 3 managed to handle their training update in May.  During the month I spent quite some time providing guidance to the new contributors both in private mails and on the debian-lts mailing list. I also reviewed a xen update where I had (rightfully) some doubts about the work done. Packaging work fonts-cantarell. After having diagnosed the problem last month, I got annoyed enough by the lack of a fixed package that I found a way to package a newer upstream release of fonts-cantarell without requiring a fontforge update that was likely to take some time still so I prepared and uploaded 0.0.24-1. cpputest. Bug #823711 reported some license issues with some of the files. I immediately forwarded this upstream (issue 961) and fixed it in Debian by repacking the upstream tarball. Fortunately upstream has been quick to handle his and there s a new upstream release (3.8) where the problematic files have been dropped. live-boot. Kali s live images were no longer booting (stuck in the initrd) and with the help of Ben Hutchings we diagnosed this back to #823069 which I fixed in live-boot 20160511. udev. I filed #824025 to request that the rule defining the MAC-based name of USB network interfaces be isolated in its own file so that it can be easily disabled (we do that in Kali). Misc stuff. I packaged Django 1.8.13 in jessie-backports. I filed
#824165 against sbuild being broken with $apt_allow_unauthenticated = 1; in .sbuildrc. I filed a wishlist bug #824168 against apt-listchanges to suggest that it ignores news from auto-installed packages. I filed #825923 to report a regression in python-nltk (discovered in Kali first). Infrastructure work packages.debian.org. A few months ago, I wrote a patch for packages.debian.org so that it forwards emails to tracker.debian.org instead of packages.qa.debian.org. At that time, I was in touch with Rhonda and was hoping that she would apply it rather quickly (the patch is rather short). After a few more pings, she made it clear that she was not alone and that I should rather file a proper request so that someone else can also process it. So I filed #824085 and tried to find someone else to apply my patch. Most of the members of pkg_maint said that they were part of the group only due to generic webmaster involvement but that they did not want to touch that part. Fortunately, Martin Zobel Helas was more receptive to my request and helped me to deploy my changes. I committed my change and Martin pulled it in the live checkout on picconi.debian.org. This update is also a first step towards the possibility to use foo@packages.debian.org and/or teams+foo@tracker.debian.org in the Maintainer field of a package. With this we can get rid of dedicated mailing lists that just duplicate the work of the package tracker. And we no longer need to care about the fact that the Maintainer is handled differently than Uploaders since all (human) co-maintainers would then be listed in Uploaders only (and the package tracker would deal appropriately with mails sent to the Maintainer). Distro Tracker. I improved the import process to be able to force a new processing of source packages that were already imported. This was useful to let it recognize architectures which were newly added in its database (and that were ignored and thus not displayed up to now). I also made a first review of the AppStream patch submitted by Matthias Klump in #806740. Thanks See you next month for a new summary of my activities.

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31 May 2016

Chris Lamb: Free software activities in May 2016

Here is my monthly update covering a large part of what I have been doing in the free software world (previously):
Debian My work in the Reproducible Builds project was covered in our weekly reports. (#53, #54, #55, #56 & #57)
Debian LTS

This month I have been paid to work 18 hours on Debian Long Term Support (LTS). In that time I did the following:
  • A week of "frontdesk" duties, triaging CVEs, assigning tasks, etc.
  • Issued DLA 464-1 for libav, a multimedia player, server, encoder and transcoder library that fixed a use-after free vulnerability.
  • Issued DLA 469-1 for libgwenhywfar (an OS abstraction layer that allows porting of software to different operating systems like Linux, *BSD, Windows, etc.) correcting the use of an outdated CA certificate bundle.
  • Issued DLA 470-1 for libksba, a X.509 and CMS certificate support library. patching a buffer vulnerability.
  • Issued DLA 474-1 for dosfstools, a collection of utilities for making and checking MS-DOS FAT filesystems, fixing an invalid memory and heap overflow vulnerability.
  • Issued DLA 482-1 for libgd2 graphics library, rectifying a stack consumption vulnerability.

Uploads
  • python-django (1.9.6-1) New upstream bugfix release.
  • redis (3.2.0-1, etc.) New upstream release, correct build on more exotic architectures and minor packaging fixups.
  • gunicorn (19.5.0-1 & 19.6.0-1) New upstream releases and minor packaging fixups.



17 May 2016

Mehdi Dogguy: Newmaint Call for help

The process leading to acceptation of new Debian Maintainers is mainly administrative today and is handled by the Newmaint team. In order to simplify this process further, the team wants to integrate their workflow into nm.debian.org's interface so that prospective maintainers can send their application online and the Newmaint team review it from within the website.

We need your help to implement the missing pieces into nm.debian.org. It is written in Python and using Django. If you have some experience with that, you should definitely join the newmaint-site mailing list and ask for the details. Enrico or someone else in the list will do their best to share their vision and explain the needed work in order to get this properly implemented!

It doesn't matter if you're already a Debian Developer to be able to contribute to this project. Anyone can step up and help!

15 May 2016

Bits from Debian: What does it mean that ZFS is included in Debian?

Petter Reinholdtsen recently blogged about ZFS availability in Debian. Many people have worked hard on getting ZFS support available in Debian and we would like to thank everyone involved in getting to this point and explain what ZFS in Debian means. The landing of ZFS in the Debian archive was blocked for years due to licensing problems. Finally, the inclusion of ZFS was announced slightly more than a year ago, on April 2015 by the DPL at the time, Lucas Nussbaum who wrote "We received legal advice from Software Freedom Law Center about the inclusion of libdvdcss and ZFS in Debian, which should unblock the situation in both cases and enable us to ship them in Debian soon.". In January this year, the following DPL, Neil McGovern blogged with a lot of more details about the legal situation behind this and summarized it as "TLDR: It s going in contrib, as a source only dkms module." ZFS is not available exactly in Debian, since Debian is only what's included in the "main" section archive. What people really meant here is that ZFS code is now in included in "contrib" and it's available for users using DKMS. Many people also mixed this with Ubuntu now including ZFS. However, Debian and Ubuntu are not doing the same, Ubuntu is shipping directly pre-built kernel modules, something that is considered to be a GPL violation. As the Software Freedom Conservancy wrote "while licensed under an acceptable license for Debian's Free Software Guidelines, also has a default use that can cause licensing problems for downstream Debian users".

Dirk Eddelbuettel: Rcpp 0.12.5: Yet another one

The fifth update in the 0.12.* series of Rcpp has arrived on the CRAN network for GNU R a few hours ago, and was just pushed to Debian. This 0.12.5 release follows the 0.12.0 release from late July, the 0.12.1 release in September, the 0.12.2 release in November, the 0.12.3 release in January, and the 0.12.4 release in March --- making it the ninth release at the steady bi-montly release frequency. This release is one again more of a maintenance release addressing a number of small bugs, nuisances or documentation issues without adding any major new features. Rcpp has become the most popular way of enhancing GNU R with C or C++ code. As of today, 662 packages on CRAN depend on Rcpp for making analytical code go faster and further. That is up by almost fifty packages from the last release in late March! And as during the last few releases, we have first-time committers. we have new first-time contributors. Sergio Marques helped to enable compilation on Alpine Linux (with its smaller libc variant). Qin Wenfeng helped adapt for Windows builds under R 3.3.0 and the long-awaited new toolchain. Ben Goodrich fixed a (possibly ancient) Rcpp Modules bug he encountered when working with rstan. Other (recurrent) contributor Dan Dillon cleaned up an issue with Nullable and strings. Rcpp Core team members Kevin and JJ took care of small build nuisance on Windows, and I added in a new helper function, updated the skeleton generator and (finally) formally deprecated loadRcppModule() for which loadModule() has been preferred since around R 2.15 or so. More details and links are below.
Changes in Rcpp version 0.12.5 (2016-05-14)
  • Changes in Rcpp API:
    • The checks for different C library implementations now also check for Musl used by Alpine Linux (Sergio Marques in PR #449).
    • Rcpp::Nullable works better with Rcpp::String (Dan Dillon in PR #453).
  • Changes in Rcpp Attributes:
    • R 3.3.0 Windows with Rtools 3.3 is now supported (Qin Wenfeng in PR #451).
    • Correct handling of dependent file paths on Windows (use winslash = "/").
  • Changes in Rcpp Modules:
    • An apparent race condition in Module loading seen with R 3.3.0 was fixed (Ben Goodrich in #461 fixing #458).
    • The (older) loadRcppModules() is now deprecated in favour of loadModule() introduced around R 2.15.1 and Rcpp 0.9.11 (PR #470).
  • Changes in Rcpp support functions:
    • The Rcpp.package.skeleton() function was again updated in order to create a DESCRIPTION file which passes R CMD check without notes. warnings, or error under R-release and R-devel (PR #471).
    • A new function compilerCheck can test for minimal g++ versions (PR #474).
Thanks to CRANberries, you can also look at a diff to the previous release. As always, even fuller details are on the Rcpp Changelog page and the Rcpp page which also leads to the downloads page, the browseable doxygen docs and zip files of doxygen output for the standard formats. A local directory has source and documentation too. Questions, comments etc should go to the rcpp-devel mailing list off the R-Forge page.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

14 May 2016

Antoine Beaupr : Long delays posting Debian Planet Venus

For the last few months, it seems that my posts haven't been reaching the Planet Debian aggregator correctly. I timed the last two posts and they both arrived roughly 10 days late in the feed.

SNI issues At first, I suspected I was a victim of the SNI bug in Planet Venus: since it is still running in Python 2.7 and uses httplib2 (as opposed to, say, Requests), it has trouble with sites running under SNI. In January, there were 9 blogs with that problem on Planet. When this was discussed elsewhere in February, there were now 18, and then 21 reported in March. With everyone enabling (like me) Let's Encrypt on their website, this number is bound to grow. I was able to reproduce the Debian Planet setup locally to do further tests and ended up sending two (unrelated) patches to the Debian bug tracker against Planet Venus, the software running Debian planet. In my local tests, I found 22 hosts with SNI problems. I also posted some pointers on how the code could be ported over to the more modern Requests and Cachecontrol modules.

Expiry issues However, some of those feeds were working fine on philp, the host I found was running as the Planet Master. Even more strange, my own website was working fine!
INFO:planet.runner:Feed https://anarc.at/tag/debian-planet/index.rss unchanged
Now that was strange: why was my feed fetched, but noted as unchanged? For that, I found that there was a FAQ question buried down in the PlanetDebian wikipage which explicitly said that Planet obeys Expires headers diligently and will not get new content again if the headers say they did. Skeptical, I looked my own headers and, ta-da! they were way off:
$ curl -v https://anarc.at/tag/debian-planet/index.rss 2>&1   egrep  '< (Expires Date)'
< Date: Sat, 14 May 2016 19:59:28 GMT
< Expires: Sat, 28 May 2016 19:59:28 GMT
So I lowered the expires timeout on my RSS feeds to 3 hours:
root@marcos:/etc/apache2# git diff
diff --git a/apache2/conf-available/expires.conf b/apache2/conf-available/expires.conf
index 214f3dd..a983738 100644
--- a/apache2/conf-available/expires.conf
+++ b/apache2/conf-available/expires.conf
@@ -3,8 +3,18 @@
   # Enable expirations.
   ExpiresActive On
-  # Cache all files for 2 weeks after access (A).
-  ExpiresDefault A1209600
+  # Cache all files 12 hours after access
+  ExpiresDefault "access plus 12 hours"
+
+  # RSS feeds should refresh more often
+  <FilesMatch \.(rss)$>
+    ExpiresDefault "modification plus 4 hours"
+  </FilesMatch> 
+
+  # images are *less* likely to change
+  <FilesMatch "\.(gif jpg png js css)$">
+    ExpiresDefault "access plus 1 month"
+  </FilesMatch>
   <FilesMatch \.(php cgi)$>
     # Do not allow scripts to be cached unless they explicitly send cache
I also lowered the general cache expiry, except for images, Javascript and CSS.

Planet Venus maintenance A small last word about all this: I'm surprised to see that Planet Debian is running a 6 year old software that hasn't seen a single official release yet, with local patches on top. It seems that Venus is well designed, I must give them that, but it's a little worrisome to see great software just rotting around like this. A good "planet" site seems like a resource a lot of FLOSS communities would need: is there another "Planet-like" aggregator out there that is well maintained and more reliable? In Python, preferably. PlanetPlanet, which Venus was forked from, is out of the question: it is even less maintained than the new fork, which itself seems to have died in 2011. There is a discussion about the state of Venus on Github which reflects some of the concerns expressed here, as well as on the mailing list. The general consensus seems to be that everyone should switch over to Planet Pluto, which is written in Ruby. I am not sure which planet Debian sits on - Pluto? Venus? Besides, Pluto is not even a planet anymore...

Mike check! So this is also a test to see if my posts reach Debian Planet correctly. I suspect no one will ever see this on the top of their feeds, since the posts do get there, but with a 10 days delay and with the original date, so they are "sunk" down. The above expiration fixes won't take effect until the 10 days delay is over... But if you did see this as noise, retroactive apologies in advance for the trouble. If you are reading this from somewhere else and wish to say hi, don't hesitate, it's always nice to hear from my readers.

10 May 2016

Reproducible builds folks: Reproducible builds: week 54 in Stretch cycle

What happened in the Reproducible Builds effort between May 1st and May 7th 2016: Media coverage There has been a surprising tweet last week: "Props to @FiloSottile for his nifty gvt golang tool. We're using it to get reproducible builds for a Zika & West Nile monitoring project." and to our surprise Kenn confirmed privately that he indeed meant "reproducible builds" as in "bit by bit identical builds". Wow. We're looking forward to learn more details about this; for now we just know that they are doing this for software quality reasons basically. Two of the four GSoC and Outreachy participants for Reproducible builds posted their introductions to Planet Debian: Toolchain fixes and other upstream developments dpkg 1.18.5 was uploaded fixing two bugs relevant to us: This upload made it necessary to rebase our dpkg on the version on sid again, which Niko Tyni and Lunar promptly did. Then a few days later 1.18.6 was released to fix a regression in the previous upload, and Niko promptly updated our patched version again. Following this Niko Tyni found #823428: "dpkg: many packages affected by dpkg-source: error: source package uses only weak checksums". Alexis Bienven e worked on tex related packages and SOURCE_DATE_EPOCH: Emmanuel Bourg uploaded jflex/1.4.3+dfsg-2, which removes timestamps from generated files. Packages fixed The following 285 packages have become reproducible due to changes in their build dependencies (mostly from GCC honouring SOURCE_DATE_EPOCH, see the previous week report): 0ad abiword abcm2ps acedb acpica-unix actiona alliance amarok amideco amsynth anjuta aolserver4-nsmysql aolserver4-nsopenssl aolserver4-nssqlite3 apbs aqsis aria2 ascd ascii2binary atheme-services audacity autodocksuite avis awardeco bacula ballerburg bb berusky berusky2 bindechexascii binkd boinc boost1.58 boost1.60 bwctl cairo-dock cd-hit cenon.app chipw ckermit clp clustalo cmatrix coinor-cbc commons-pool cppformat crashmail crrcsim csvimp cyphesis-cpp dact dar darcs darkradiant dcap dia distcc dolphin-emu drumkv1 dtach dune-localfunctions dvbsnoop dvbstreamer eclib ed2k-hash edfbrowser efax-gtk efax exonerate f-irc fakepop fbb filezilla fityk flasm flightgear fluxbox fmit fossil freedink-dfarc freehdl freemedforms-project freeplayer freeradius fxload gdb-arm-none-eabi geany-plugins geany geda-gaf gfm gif2png giflib gifticlib glaurung glusterfs gnokii gnubiff gnugk goaccess gocr goldencheetah gom gopchop gosmore gpsim gputils grcompiler grisbi gtkpod gvpe hardlink haskell-github hashrat hatari herculesstudio hpcc hypre i2util incron infiniband-diags infon ips iptotal ipv6calc iqtree jabber-muc jama jamnntpd janino jcharts joy2key jpilot jumpnbump jvim kanatest kbuild kchmviewer konclude krename kscope kvpnc latexdiff lcrack leocad libace-perl libcaca libcgicc libdap libdbi-drivers libewf libjlayer-java libkcompactdisc liblscp libmp3spi-java libpwiz librecad libspin-java libuninum libzypp lightdm-gtk-greeter lighttpd linpac lookup lz4 lzop maitreya meshlab mgetty mhwaveedit minbif minc-tools moc mrtrix mscompress msort mudlet multiwatch mysecureshell nifticlib nkf noblenote nqc numactl numad octave-optim omega-rpg open-cobol openmama openmprtl openrpt opensm openvpn openvswitch owx pads parsinsert pcb pd-hcs pd-hexloader pd-hid pd-libdir pear-channels pgn-extract phnxdeco php-amqp php-apcu-bc php-apcu php-solr pidgin-librvp plan plymouth pnscan pocketsphinx polygraph portaudio19 postbooks-updater postbooks powertop previsat progressivemauve puredata-import pycurl qjackctl qmidinet qsampler qsopt-ex qsynth qtractor quassel quelcom quickplot qxgedit ratpoison rlpr robojournal samplv1 sanlock saods9 schism scorched3d scummvm-tools sdlbasic sgrep simh sinfo sip-tester sludge sniffit sox spd speex stimfit swarm-cluster synfig synthv1 syslog-ng tart tessa theseus thunar-vcs-plugin ticcutils tickr tilp2 timbl timblserver tkgate transtermhp tstools tvoe ucarp ultracopier undbx uni2ascii uniutils universalindentgui util-vserver uudeview vfu virtualjaguar vmpk voms voxbo vpcs wipe x264 xcfa xfrisk xmorph xmount xyscan yacas yasm z88dk zeal zsync zynaddsubfx Last week the 1000th bug usertagged "reproducible" was fixed! This means roughly 2 bugs per day since 2015-01-01. Kudos and huge thanks to everyone involved! Please also note: FTBFS packages have not been counted here and there are still 600 open bugs with reproducible patches provided. Please help bringing that number down to 0! The following packages have become reproducible after being fixed: Some uploads have fixed some reproducibility issues, but not all of them: Uploads which fix reproducibility issues, but currently FTBFS: Patches submitted that have not made their way to the archive yet: Package reviews 54 reviews have been added, 6 have been updated and 44 have been removed in this week. 18 FTBFS bugs have been reported by Chris Lamb, James Cowgill and Niko Tyni. diffoscope development Thanks to Mattia, diffoscope 52~bpo8+1 is available in jessie-backports now. tests.reproducible-builds.org Misc. This week's edition was written by Reiner Herrmann, Holger Levsen and Mattia Rizzolo and reviewed by a bunch of Reproducible builds folks on IRC. Mattia also wrote a small ikiwiki macro for this blog to ease linking reproducible issues, packages in the package tracker and bugs in the Debian BTS.

3 May 2016

Rapha&#235;l Hertzog: My Free Software Activities in April 2016

My monthly report covers a large part of what I have been doing in the free software world. I write it for my donators (thanks to them!) but also for the wider Debian community because it can give ideas to newcomers and it s one of the best ways to find volunteers to work with me on projects that matter to me. Debian LTS I handled a new LTS sponsor that wanted to see wheezy keep supporting armel and armhf. This was not part of our initial plans (set during last Debconf) and I thus mailed all teams that were impacted if we were to collectively decide that it was OK to support those architectures. While I was hoping to get a clear answer rather quickly, it turns out that we never managed to get an answer to the question from all parties. Instead the discussion drifted on the more general topic of how we handle sponsorship/funding in the LTS project. Fortunately, the buildd maintainers said they were OK with this and the ftpmasters had no objections, and they both implicitly enacted the decision: Ansgar Burchardt kept the armel/armhf architectures in the wheezy/updates suite when he handled the switch to the LTS team, and Aur lien Jarno also configured wanna-build to keep building armel/armhf for the suite. The DSA team did not confirm that this change was not interfering with one of their plans to decommission some hardware. Build daemons are a shared resource anyway and a single server is likely to handle builds for multiple releases. DebConf 16 This month I registered for DebConf 16 and submitted multiple talk/BoF proposals: I want to share the setup we use in Kali as it can be useful for other derivatives and also for Debian itself to help smooth the relationship with derivatives. I also want to open again the debate on the usage of money within Debian. It s a hard topic but we should really strive to take some official position on what s possible and what s not possible. With Debian LTS and its sponsorship we have seen that we can use money to some extent without hurting the Debian project as a whole. Can this be transposed to other teams or projects? What are the limits? Can we define a framework and clear rules? I expect the discussion to be very interesting in the BoF. Mehdi Dogguy has agreed to handle this BoF with me. Packaging Django. I uploaded 1.8.12 to jessie-backports and 1.9.5 to unstable. I filed two upstream bugs (26473 and 26474) for two problems spotted by lintian. Unfortunately, when I wanted to upload it to unstable, the test suite did not ran. I pinned this down to a sqlite regression. Chris Lamb filed #820225 and I contacted the SQLite and Django upstream developers by email to point them to this issue. I helped the SQLite upstream author (Richard Hipp) to reproduce the issue and he was quick to provide a patch which landed in 3.12.1. Later in the month I made another upload to fix an upgrade bug (#821789). GNOME 3.20. As for each new version, I updated gnome-shell-timer to ensure it works with the new GNOME. This time I spent a bit more time to fix a regression (805347) that dates back to a while and that would never be fixed otherwise since the upstream author orphaned this extension (as he no longer uses GNOME). I have also been bitten by display problems where accented characters would be displayed below the character that follows. With the help of members of the GNOME team, we found out that this was a problem specific to the cantarell font and was only triggered with Harfbuzz 1.2. This is tracked in Debian with #822682 on harfbuzz and #822762 in fonts-cantarell. There s a new upstream release (with the fix) ready to be packaged but unfortunately it is blocked by the lack of a recent fontforge in Debian. I thus mailed debian-mentors in the hope to find volunteers to help the pkg-fonts team to package a newer version Misc Debian/Kali work Distro Tracker. I started to mentor Vladimir Likic who contacted me because he wants to contribute to Distro Tracker. I helped him to setup his development environment and we fixed a few issues in the process. Bug reports. I filed many bug reports, most of them due to my work on Kali: I also investigated #819958 that was affecting testing since it has been reported to Kali as well. And I made an NMU of dh-make-golang to fix #819472 that I reported earlier. Thanks See you next month for a new summary of my activities.

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