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6 August 2015

Eduard Sanou: Reproducible builds on Debian for GSoC 2015, 1st update

This is the second blog post I m writing about my experiences contributing to Debian for Google Summer of Code 2015 (check my first post)

Status update

First month It s been two months and a few days since the GSoC started. During the first month I worked on fixing specific packages, mainly concerning issues with timestamps, which is a very common source of unreproducibility. In many cases, during the build process files are compressed into gzip or zip archives, which store the creation time of files in the metadata. This can lead to unreproducible results when there is timezone variation between builds (easily fixed setting the timezone to UTC before the compression happens). In some cases the compressed files are generated during the build, and thus add build times in the metadata of compressed files (in this case the creation date of the files needs to be normalized somehow). As explained in my application, I finished exams on the end of June, that s why I chose to work on small fixes first, so that I could make the most out of my time between studying and finishing university projects and reports. I m happy with my first month, as I have worked as originally planned. Actually, my estimation of the number of bugs I could submit every week was surpassed in reality!

Second month Once the university was over, I started dedicating myself fully to the project. This allowed me to start working on toolchain fixes, following my original plan on working with timestamp related issues. In particular I have been working a lot in implementing a proposal for deterministic timestamps that appeared in the reproducible builds project. The idea is to define an environment variable called SOURCE_DATE_EPOCH that contains a known timestamp in Unix epoch format. With this variable exported, tools that would embed the localtime in their generated or processed files, can use this externally supplied date. This would happen only if SOURCE_DATE_EPOCH is exported, so the behaviour of the tool wouldn t change if the variable is not set. The first package I patched to implement this behaviour was gcc. The reason behind this is that there are about 420 unreproducible packages due to using the __DATE__, __TIME__ and __TIMESTAMP__ C macros. My patch changes the behavior of the macros __DATE__ and __TIME__ if SOURCE_DATE_EPOCH is exported. I submitted this patch to the gcc-patches list. Even though there was some interesting discussions in the list, the patch has not been accepted yet. Seeing how the reproducible builds idea is gaining momentum and becoming widespread, I m positive that at some point the gcc people will be more receptive for such patch. The second work with SOURCE_DATE_EPOCH was in debhelper; I patched this building tool to export the variable with the latest debian/changelog entry timestamp. With this patch, all the tools that run under dh will be able to use it to embed deterministic timestamps. Unfortunately some parts of the build process of some packages don t happen under debhelper, so the variable needs to be exported in a different way. Having submitted the debhelper patch allowed many packages to become reproducible after the tools that embedded timestamps were patched to honour SOURCE_DATE_EPOCH. As of today, the toolchain packages I have patched to do that are: gcc, libxslt, gettext, ghostscript and qt4-x11 (qhelpgenerator). I have also continued working on fixing individual packages affected by timestamps, random orderings (such as the ones from listing hash keys) and locale depending orderings; I have tagged packages in our infrastructure to note what kind of issue makes them unreproducible; I have updated some parts of the Reproducible Builds Wiki.

Impressions about reproducible builds The work I did during the first month felt a bit tedious sometimes: it didn t require much creativity or thinking as most of the fixes where quite mechanical, following a recipe. After I became free from university duties, I started looking into less trivial issues, which require more deep investigation and feel more rewarding once they are fixed. I also worked on toolchain fixes, which need more work and need more care. Fixing toolchain packages feels particularly rewarding because they can cause many packages to become reproducible at once. There is a very active community in the reproducible builds project! It s great to see so many people contributing to this project spending so many hours and putting so much effort. I ve felt very welcome from the beginning and I have gotten kind replies and helpful answers to all the questions and doubts I ve had, both from my mentor and from the other people in the project. I want to add that I m still amazed by the awesome infrastructure set up for the reproducible builds project. The team is using a Jenkins machine to continuously build packages to check for reproducibility, with irc notifications for changes, and also with a really useful web interface to list all the packages organized by issues that allows exploring them individually with all the available information. Also not only the infrastructure is used to build Debian amd64 packages, but also FreeBSD, NetBSD, OpenWRT, coreboot and lately Debian armhf with the help of a few new arm nodes.

Impressions about working on a free software project This was my first time working on a community driven free software project and I ve learned so many things. Something I learned during the first days, which is even more present in such wide project like the reproducible builds, is that contributing is not just writing patches for the features you want; you also need to convince the maintainer of the package to accept the patch! I was a bit surprised at the beginning because even if this is a Debian project, that aims to make changes to the whole distribution, decisions are not absolute for the whole Debian project. After taking decisions within the reproducible builds teams on how to approach things, we need to convince the rest of the Debian developers (mainly maintainers) to follow them, as they are allowed to disagree. So it is required to work together for solutions that makes everyone comfortable, usually with discussions on mailing lists or irc. There is another fact that I wasn t expecting before getting involved in this project. The kind of teamwork I have done previously involves having a leader who decides how stuff is done, who takes decisions when needed and oversees the whole project. There seems to be a different philosophy in Debian. Instead of having a leader, everyone tries their best, trying to convince the others that their solution is good, often by showing an implementation of the solution and providing proof that it works, rather than trying to get the solution accepted before coding it. Also, solutions and ideas are valued for their quality rather than by the position of the person submitting them, and there is no hierarchy within the group: all comments and advices are taken equally, valuing their usefulness regardless of who gives them. Usually there are no votes when deciding things. Members try their best on their approaches, trying to convince others as best as they can. And even if someone disagrees they may end up accepting the solution if they don t manage to convince the original proposer of doing things differently. The idea is to spend more time working and coding than arguing and deciding on the way to do things. So far I ve seen this approach to be very efficient :) I ve been told by my mentor that for difficult cases there exist a Debian committee that helps mediate on disagreements, but that is only used as a last option, probably when the discussion gets heated up.

Personal experience Overall I m very happy to finally having set my foot in the free software community, where I m able to contribute to the kind of software I have been using for years. The sense of community in Debian is really big, and everyone is invited to participate. I think that Google is doing an awesome job with the Google Summer of Code, not only because it gives a lot to free software but because it helps students to join the free software world as contributors (which is something that may be difficult to get into when you don t know how to begin, as it happened to myself for some time). I plan to continue contributing to the free software world, and I d encourage anyone to find projects to get involved and contribute as well! Happy hacking to everyone!

5 August 2015

Antonio Terceiro: Elixir in Debian, MiniDebconf at FISL, and Debian CI updates

In June I started keeping track of my Debian activities, and this is my July update. Elixir in Debian Elixir is a functional language built on top of the Erlang virtual machine. If features imutable data structures, interesting concurrency primitives, and everything else that Erlang does, but with a syntax inspired by Ruby what makes it much more aproachable in my opinion. Those interested in Elixir for Debian are encouraged to hang around in #debian-elixir on the OFTC IRC servers. There are still a lot of things to figure out, for example how packaging Elixir libraries and applications is going to work. MiniDebconf at FISL, and beyond I helped organize a MiniDebconf at this year s FISL, in Porto Alegre on the 10th of July. The whole program was targetted at getting more people to participate in Debian, so there were talks about translation, packaging, and a few other more specific topics. I myself gave two talks: one about Debian basics, What is Debian, and how it works , and second one on packaging the free software web , which I will also give at Debconf15 later this month. The recordings are available (all talks in Portuguese) at the Debian video archive thanks to Holger Levsen. We are also organizing a new MiniDebconf in October as part of the Latinoware schedule. Ruby We are in the middle of a transition to switch to Ruby 2.2 as default in Debian unstable, and we are almost there. The Ruby transition is now on hold while GCC 5 one is going on, but will be picked up as soon as were are done with GCC 5. ruby-defaults has been uploaded to experimental for those that want to try having Ruby 2.2 as default before that change hits unstable. I myself have been using Ruby 2.2 as default for several weeks without any problem so far, including using vagrant on a daily basis and doing all my development on sid with it. I started taking notes about Ruby interpreter transitions work to make sure that knowledge is registered. I have uploaded minor security updates of both ruby2.1 and ruby2.2 to unstable. They both reached testing earlier today. I have also fixed another bug in redmine, which I hope to get into stable as well as soon as possible. gem2deb has seen several improvements through versions 0.19, 0.20, 0.20.1 and 0.20.2. I have updated a few packages: Two NEW packages, ruby-rack-contrib and ruby-grape-logging ,were ACCEPTED into the Debian archive. Kudos to the ftp-master team who are doing an awesome job reviewing new packages really fast. Debian Continuous Integration This month I have made good progress with the changes needed to make debci work as a distributed system with one master/scheduler node and as many worker nodes (running tests) as possible. While doing my tests, I have submitted a patch to lxc and updated autodep8 in unstable. At some point I plan to upload both autodep8 and autopkgtest to jessie-backports. Sponsoring I have sponsored a few packages:

4 August 2015

Matthew Garrett: Reverse this

The TODO group is an industry body that appears to be trying to define community best practices or something. I don't really know what their backstory is and whether they're trying to do meaningful work or just provide a fig leaf of respectability to organisations that dislike being criticised for doing nothing to improve the state of online communities but don't want to have to actually do anything, and their initial work on codes of conduct was, perhaps, suboptimal. But they do appear to be trying to improve things - this commit added a set of inappropriate behaviours, and also clarified that reverseisms were not actionable behaviour.

At which point Reddit lost its shit, because Reddit is garbage. And now the repository is a mess of white men attempting to explain how any policy that could allow them to be criticised is the real racism.

Fuck that shit.

Being a cis white man who's a native English speaker from a fairly well-off background, I'm pretty familiar with privilege. Spending my teenage years as an atheist of Irish Catholic upbringing in a Protestant school in a region of Northern Ireland that made parts of the bible belt look socially progressive, I'm also pretty familiar with the idea that that said privilege doesn't shield me from everything bad in life. Having privilege isn't a guarantee that my life will be better, in the same way that avoiding smoking doesn't mean I won't die of lung cancer. But there's an association in both cases, one that's strong enough to alter the statistical likelihood in meaningful ways.

And that inherently affects discussions about race or gender or sexuality. The probability that I've been subject to systematic discrimination because of these traits is vanishingly small. In the communities this policy is intended to cover, I'm the default. It's very difficult for any minority to exercise power over me. "You're white, you wouldn't understand" isn't fundamentally about my colour, it's about the fact that my colour means I haven't been subject to society trying to make my life more difficult at every opportunity. A community that considers saying that to be racist is a community that will never change the default, a community that will never be able to empower people who didn't grow up with that privilege. A code of conduct that makes it clear that "reverse racism" isn't grounds for complaint makes it clear that certain conversations are legitimate and helps ensure we have the framework we need to gradually change that default, and as such is better than one that doesn't.

(comments disabled because I don't trust any of you)

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Julien Danjou: Ceilometer, Gnocchi & Aodh: Liberty progress

It's been a while since I talked about Ceilometer and its companions, so I thought I'd go ahead and write a bit about what's going on this side of OpenStack. I'm not going to cover new features and fancy stuff today, but rather a shallow overview of the new project processes we initiated. Ceilometer growing Ceilometer has grown a lot since that time when we started it 3 years ago. It has evolved from a system designed to fetch and store measurements, to a more complex system, with agents, alarms, events, databases, APIs, etc. All those features were needed and asked for by users and operators, but let's be honest, some of them should never have ended up in the Ceilometer code repository, especially not all at the same time. The reality is we picked a pragmatic approach due to the rigidity of the OpenStack Technical Committee in regards to new projects to become OpenStack integrated and, therefore, blessed projects. Ceilometer was actually the first project to be incubated and then integrated. We had to go through the very first issues of that process. Fortunately, now that time has passed, and all those constraints have been relaxed. To me, the OpenStack Foundation is turning into something that looks like the Apache Foundation, and there's, therefore, no need to tie technical solutions to political issues. Indeed, the Big Tent now allows much more flexibility to all of that. Back a year ago, we were afraid to bring Gnocchi into Ceilometer. Was the Technical Committee going to review the project? Was the project going to be in the scope of Ceilometer for the Technical Committee? Now we don't have to ask ourselves those questions, now that we have that freedom, it empowers us to actually do what we think is good in term of technical design without worrying too much about political issues.
Ceilometer development activity
Acknowledging Gnocchi The first step in this new process was to continue working on Gnocchi (a timeserie database and resource indexer designed to overcome historical Ceilometer storage issue) and to decide that it was not the right call to merge it into Ceilometer as some REST API v3, but that it was better to keep it standalone. We managed to get traction to Gnocchi, getting a few contributors and users. We're even seeing talks proposed to the next Tokyo Summit where people leverage Gnocchi, such as "Service of predictive analytics on cost and performance in OpenStack", "Suveil" and "Cutting Edge NFV On OpenStack: Healing and Scaling Distributed Applications". We are also doing some progress on pushing Gnocchi outside of the OpenStack community, as it can be a self-sufficient timeserie and resource database that can be used without any OpenStack interaction. Branching Aodh Rather than continuing to grow Ceilometer, during the last summit we all decided that it was time to reorganize and split Ceilometer into the different components it is made of, leveraging a more service-oriented architecture. The alarm subsystem of Ceilometer being mostly untied to the rest of Ceilometer, we decided it was the first and perfect candidate to do that. I personally engaged into doing the work and created a new repository with only the alarm code from Ceilometer, named Aodh.
Aodh is an Irish word meaning fire. A word picked so it also had some relation to Heat, and because we have some Irish influence around the project .
This made sense for a lot of reason. First because Aodh can now work completely standalone, using either Ceilometer or Gnocchi as a backend or any new plugin you'd write. I love the idea that OpenStack projects can work standalone like Swift does for example without implying any other OpenStack component. I think it's a proof of good design. Secondly, because it allows us to resonate on a smaller chunk of software a reason really under-estimated today in OpenStack. I believe that the size of your software should match a certain ratio to the size of your team. Aodh is, therefore, a new project under the OpenStack Telemetry program (or what remains of OpenStack programs now), alongside Ceilometer and Gnocchi, forked from the original Ceilometer alarm feature. We'll deprecate the latter with the Liberty release, and we'll remove it in the Mitaka release. Lessons learned Actually, moving that code out of Ceilometer (in the case of Aodh), or not merging it in (in the case of Gnocchi) had a few side effects that I admit I think we probably under-estimated back then. Indeed, the code size of Gnocchi or Aodh ended up being much smaller than the entire Ceilometer project Gnocchi is 7 smaller and Aodh 5x smaller than Ceilometer and therefore much more easy to manipulate and to hack on. That allowed us to merge dozens of patches in a few weeks, cleaning-up and enhancing a lot of small things in the code. Those tasks are very much harder in Ceilometer, due to the bigger size of the code base and the small size of our team. By having our small team working on smaller chunks of changes even when it meant actually doing more reviews greatly improved our general velocity and the number of bugs fixed and features implemented. On the more sociological side, I think it gave the team the sensation of finally owning the project. Ceilometer was huge, and it was impossible for people to know every side of it. Now, it's getting possible for people inside a team to cover a much larger portion of those smaller project, which gives them a greater sense of ownership and caring. Which ends up being good for the project quality overall. That also means that we technically decided to have different core teams by project (Ceilometer, Gnocchi, and Aodh) as they all serve different purposes and can all be used standalone or with each others. Meaning we could have contributors completely ignoring other projects. All of that reminds me some discussion I heard about projects such as Glance, trying to fit new features in - some that are really orthogonal to the original purpose. It's now clear to me that having different small components interacting together that can be completely owned and taken care of by a (small) team of contributors is the way to go. People that can therefore trust each others and easily bring new people in, makes a project really incredibly more powerful. Having a project covering a too wide set of features make things more difficult if you don't have enough manpower. This is clearly an issue that big projects inside OpenStack are facing now, such as Neutron or Nova.

3 August 2015

Sven Hoexter: Failing with F5: CMP - Clustered Multiprocessing

The last Whiteboard Wednesday tackled a few of the gotchas of the F5 CMP implementation. I take that as an opportunity to finish a blog post I started to write six month ago on this topic. I've run into two scenarios where CMP got in my way: All of this happened on TMOS 11.4.1+HF run on BigIP 2K systems. Since F5 is sometimes moving very quickly you might not experience those issues on other hardware or with a different software release. applying low and strict connection limits Apparently connection limits are counted on a per tmm level and are not shared between the tmm processes running on different CPUs. So if you've two CPU cores with HT you'll see four tmm processes that will all enforce the connection limit. If you have a max connection limit set to two you might still see a maximum of eight connections. That is a very bad thing if you abuse the F5 to limit your outbound connections because your counter part is not able to enforce connection limits, but forces you via a contract to not open more then two connections. Disable CMP and it will all end on the same tmm process and suddenly your connection limits work as expected. If your connection limit is big enough you can cheat, say it's twelve connections, you can configure a limit of three. With four processes that makes a max of twelve connections as required. Though due to the hashing and distribution among the tmm processes it could happen that you reject connections on one process while others are idle. Another option would be to enter the dirty land of iRules and tables to maintain your own connection count table. There are examples given in the F5 devcentral community, but the best resolution you can get, without starting to scan the whole table on every request, is X requests per minute. active health checks Active monitoring checks were added to detect the operational state of our application servers. Now imagine you have some realtime processing with over a hundred requests per minute. So in case you've issues with one instance you'd like to remove it from the pool rather sooner then later, which requires frequent checking. So here is a simple active http check:
defaults-from http-appmon
destination *:*
interval 9
recv "^HTTP/1\\.1 200 OK"
send "GET /mon/state HTTP/1.1\\r\\nHost: MON\\r\\nConnection: Close\\r\\n\\r\\n"
time-until-up 0
timeout 2
up-interval 1
(Configuration options are described here) With an up-interval of 1 second and a timeout of 2 seconds someone naive like me expected that a fatal issue like a crashed application would be detected within three seconds and no more requests should hit the application after second 3. That turned out to be slightly longer, at least 4s for this case, often longer. Also for a regular maintenance we had to instruct our scripts to flip the application monitor to unavailable and wait for interval X tmm process count + timeout + 1s + max allowed request duration. That is not an instant off. If you use tcpdump (on the F5 where it's patched to show you the tmm that received the request) to look at the health check traffic you'll notice that the tmm threads pass around the handle to do a health check. So my guess is the threads do only sync the health check state of the application when they're due to run the health check. Makes sense performance wise but if you operate with longer timeouts and bigger intervals you will definetly loose a notable amount of requests. Even in our low end case we already loose a notable amount of requests in 4s. While you could resent them you never know exactly if a request was already processed or not. So you have to ensure that somewhere else in your stack. One option is to disable CMP but I guess that's not an option for most people that are required to scale out to handle the load and not only for the sake of redundancy. If you're running the balancer only for the sake of redundancy the choice is easy. You find a hint on this kind of issue if you lookup the documentation for the inband monitor: Note: Systems with multiple tmm processes use a per-process number to calculate failures, depending on the specified load balancing method. That case is a bit different due to the nature of the monitor but points in the same direction. The actual check is executed by bigd according to this document, so I'm pretty sure I'm still missing some pieces of the picture. Just be warned that you've to really test your outage scenarios and you should double check it if you run a transaction based service that is sensitive to lost requests.

Lunar: Reproducible builds: week 14 in Stretch cycle

What happened in the reproducible builds effort this week: Toolchain fixes akira submitted a patch to make cdbs export SOURCE_DATE_EPOCH. She uploded a package with the enhancement to the experimental reproducible repository. Packages fixed The following 15 packages became reproducible due to changes in their build dependencies: dracut, editorconfig-core, elasticsearch, fish, libftdi1, liblouisxml, mk-configure, nanoc, octave-bim, octave-data-smoothing, octave-financial, octave-ga, octave-missing-functions, octave-secs1d, octave-splines, valgrind. The following packages became reproducible after getting fixed: Some uploads fixed some reproducibility issues but not all of them: In contrib, Dmitry Smirnov improved libdvd-pkg with 1.3.99-1-1. Patches submitted which have not made their way to the archive yet: reproducible.debian.net Four armhf build hosts were provided by Vagrant Cascadian and have been configured to be used by jenkins.debian.net. Work on including armhf builds in the reproducible.debian.net webpages has begun. So far the repository comparison page just shows us which armhf binary packages are currently missing in our repo. (h01ger) The scheduler has been changed to re-schedule more packages from stretch than sid, as the gcc5 transition has started This mostly affects build log age. (h01ger) A new depwait status has been introduced for packages which can't be built because of missing build dependencies. (Mattia Rizzolo) debbindiff development Finally, on August 31st, Lunar released debbindiff 27 containing a complete overhaul of the code for the comparison stage. The new architecture is more versatile and extensible while minimizing code duplication. libarchive is now used to handle cpio archives and iso9660 images through the newly packaged python-libarchive-c. This should also help support a couple other archive formats in the future. Symlinks and devices are now properly compared. Text files are compared as Unicode after being decoded, and encoding differences are reported. Support for Sqlite3 and Mono/.NET executables has been added. Thanks to Valentin Lorentz, the test suite should now run on more systems. A small defiency in unquashfs has been identified in the process. A long standing optimization is now performed on Debian package: based on the content of the md5sums control file, we skip comparing files with matching hashes. This makes debbindiff usable on packages with many files. Fuzzy-matching is now performed for files in the same container (like a tarball) to handle renames. Also, for Debian .changes, listed files are now compared without looking the embedded version number. This makes debbindiff a lot more useful when comparing different versions of the same package. Based on the rearchitecturing work has been done to allow parallel processing. The branch now seems to work most of the time. More test needs to be done before it can be merged. The current fuzzy-matching algorithm, ssdeep, has showed disappointing results. One important use case is being able to properly compare debug symbols. Their path is made using the Build ID. As this identifier is made with a checksum of the binary content, finding things like CPP macros is much easier when a diff of the debug symbols is available. Good news is that TLSH, another fuzzy-matching algorithm, has been tested with much better results. A package is waiting in NEW and the code is ready for it to become available. A follow-up release 28 was made on August 2nd fixing content label used for gzip2, bzip2 and xz files and an error on text files only differing in their encoding. It also contains a small code improvement on how comments on Difference object are handled. This is the last release name debbindiff. A new name has been chosen to better reflect that it is not a Debian specific tool. Stay tuned! Documentation update Valentin Lorentz updated the patch submission template to suggest to write the kind of issue in the bug subject. Small progress have been made on the Reproducible Builds HOWTO while preparing the related CCCamp15 talk. Package reviews 235 obsolete reviews have been removed, 47 added and 113 updated this week. 42 reports for packages failing to build from source have been made by Chris West (Faux). New issue added this week: haskell_devscripts_locale_substvars. Misc. Valentin Lorentz wrote a script to report packages tested as unreproducible installed on a system. We encourage everyone to run it on their systems and give feedback!

2 August 2015

Benjamin Mako Hill: Understanding Hydroplane Races for the New Seattleite

It s Seafair weekend in Seattle. As always, the centerpiece is the H1 Unlimited hydroplane races on Lake Washington. EllstromManufacturingHydroplaneIn my social circle, I m nearly the only person I know who grew up in area. None of the newcomers I know had heard of hydroplane racing before moving to Seattle. Even after I explain it to them i.e., boats with 3,000+ horse power airplane engines that fly just above the water at more than 320kph (200mph) leaving 10m+ (30ft) wakes behind them! most people seem more puzzled than interested. I grew up near the shore of Lake Washington and could see (and hear!) the races from my house. I don t follow hydroplane racing throughout the year but I do enjoy watching the races at Seafair. Here s my attempt to explain and make the case for the races to new Seattleites. Before Microsoft, Amazon, Starbucks, etc., there were basically three major Seattle industries: (1) logging and lumber based industries like paper manufacturing; (2) maritime industries like fishing, shipbuilding, shipping, and the navy; (3) aerospace (i.e., Boeing). Vintage hydroplane racing represented the Seattle trifecta: Wooden boats with airplane engines! The wooden U-60 Miss Thriftway circa 1955 (Thriftway is a Washinton-based supermarket that nobody outside has heard of) below is a picture of old-Seattle awesomeness. Modern hydroplanes are now made of fiberglass but two out of three isn t bad. miss_thriftwayAlthough the boats are racing this year in events in Indiana, San Diego, and Detroit in addition to the two races in Washington, hydroplane racing retains deep ties to the region. Most of the drivers are from the Seattle area. Many or most of the teams and boats are based in Washington throughout the year. Many of the sponsors are unknown outside of the state. This parochialness itself cultivates a certain kind of appeal among locals. In addition to old-Seattle/new-Seattle cultural divide, there s a class divide that I think is also worth challenging. Although the demographics of hydro-racing fans is surprisingly broad, it can seem like Formula One or NASCAR on the water. It seems safe to suggest that many of the demographic groups moving to Seattle for jobs in the tech industry are not big into motorsports. Although I m no follower of motorsports in general, I ve written before cultivated disinterest in professional sports, and it remains something that I believe is worth taking on. It s not all great. In particular, the close relationship between Seafair and the military makes me very uneasy. That said, even with the military-heavy airshow, I enjoy the way that Seafair weekend provides a little pocket of old-Seattle that remains effectively unchanged from when I was a kid. I d encourage others to enjoy it as well!

Benjamin Mako Hill: Understanding Hydroplane Races for the New Seattleite

It s Seafair weekend in Seattle. As always, the centerpiece is the H1 Unlimited hydroplane races on Lake Washington. EllstromManufacturingHydroplaneIn my social circle, I m nearly the only person I know who grew up in area. None of the newcomers I know had heard of hydroplane racing before moving to Seattle. Even after I explain it to them i.e., boats with 3,000+ horse power airplane engines that fly just above the water at more than 320kph (200mph) leaving 10m+ (30ft) wakes behind them! most people seem more puzzled than interested. I grew up near the shore of Lake Washington and could see (and hear!) the races from my house. I don t follow hydroplane racing throughout the year but I do enjoy watching the races at Seafair. Here s my attempt to explain and make the case for the races to new Seattleites. Before Microsoft, Amazon, Starbucks, etc., there were basically three major Seattle industries: (1) logging and lumber based industries like paper manufacturing; (2) maritime industries like fishing, shipbuilding, shipping, and the navy; (3) aerospace (i.e., Boeing). Vintage hydroplane racing represented the Seattle trifecta: Wooden boats with airplane engines! The wooden U-60 Miss Thriftway circa 1955 (Thriftway is a Washinton-based supermarket that nobody outside has heard of) below is a picture of old-Seattle awesomeness. Modern hydroplanes are now made of fiberglass but two out of three isn t bad. miss_thriftwayAlthough the boats are racing this year in events in Indiana, San Diego, and Detroit in addition to the two races in Washington, hydroplane racing retains deep ties to the region. Most of the drivers are from the Seattle area. Many or most of the teams and boats are based in Washington throughout the year. Many of the sponsors are unknown outside of the state. This parochialness itself cultivates a certain kind of appeal among locals. In addition to old-Seattle/new-Seattle cultural divide, there s a class divide that I think is also worth challenging. Although the demographics of hydro-racing fans is surprisingly broad, it can seem like Formula One or NASCAR on the water. It seems safe to suggest that many of the demographic groups moving to Seattle for jobs in the tech industry are not big into motorsports. Although I m no follower of motorsports in general, I ve written before cultivated disinterest in professional sports, and it remains something that I believe is worth taking on. It s not all great. In particular, the close relationship between Seafair and the military makes me very uneasy. That said, even with the military-heavy airshow, I enjoy the way that Seafair weekend provides a little pocket of old-Seattle that remains effectively unchanged from when I was a kid. I d encourage others to enjoy it as well!

1 August 2015

Lars Wirzenius: Obnam 1.13 released (backup software)

I have just released version 1.13 of Obnam, my backup program. See the website at http://obnam.org for details on what it does. The new version is available from git (see http://git.liw.fi) and as Debian packages from http://code.liw.fi/debian, and uploaded to Debian, and soon in unstable. The NEWS file extract below gives the highlights of what's new in this version. Version 1.13, released 2015-08-01 Bug fixes: Improvements:

Russ Allbery: Review: The Pyramid Waltz

Review: The Pyramid Waltz, by Barbara Ann Wright
Series: Katya and Starbride #1
Publisher: Bold Strokes
Copyright: September 2012
ISBN: 1-60282-792-3
Format: Kindle
Pages: 264
Princess Katya Nar Umbriel is publicly a bored, womanizing, and difficult daughter to the rulers of Farraday. It's all an act, though, with the full knowledge of her parents. As the second child, she's the leader of the Order of Vestra: the equivalent of the Secret Service, devoted to protecting the royal family and, by extension, the kingdom, particularly against magical attacks. Starbride is new to court and entirely out of place. From a northern neighboring country, and far more comfortable in practical clothing than the frilled court dresses that her mother wants her to wear, she has been sent to court to make contacts. Her people are getting the bad side of various trade contracts and desperately need some political maneuvering space of their own. Starbride's best hope for this is to study law in the palace library when she can manage to avoid the other courtiers. But then she and Katya stumble across each other, outside of the roles they're playing, and might have an opportunity for a deeper connection. One that neither of them want to entangle in their personal worries. This is the last of a set of books I picked up while looking for lesbian romance with fantasy or science fiction elements. On the romance front, it's one of the better entries in that set. Both Katya and Starbride are likeable, in large part due to their mutual exasperation with the trappings of the court. (Making the protagonists more serious, thoughtful, and intelligent than the surrounding characters is an old trick, but it works.) Wright has a good ear for banter, particularly the kind when two people of good will are carefully feeling each other out. And despite Katya's need to keep a deep secret from Starbride for some of the book, The Pyramid Waltz mostly avoids irritating communication failures as a plot driver. The fantasy portion and the plot drivers, alas, are weaker. The world building is not exactly bad, but it's just not that interesting. There are a couple of moderately good ideas, in the form of pyramid magic and secret (and dangerous) magical powers that run in the royal family, but they're not well-developed. Pyramid magic turns out to look much like any other generic fantasy magic system, with training scenes that could have come from a Valdemar or Wheel of Time novel (and without as much dramatic tension). And the royal family's secret, while better-developed and integral to the plot, still felt rather generic and one-sided. Maybe that's something Wright develops better in future novels in this series, but that was another problem: the ending of The Pyramid Waltz was rather weak. Partly, I think, this is because the cast is too large and not well-developed. I cared about Katya and Starbird, and to a lesser extent their servants and one of the Order members. (Wright has a moderately interesting bit of worldbuilding about how servants work in Starbride's culture, which I wish we'd seen more of.) But there are a bunch of other Order of Vesta members, Katya's family, and various other bits of history and hinted world views, none of which seemed to get much depth. The ending climax involved a lot of revelations and twists that primarily concerned characters I didn't care about. It lost something in the process. This book is clearly set up for a sequel. There is an ending, but it's not entirely satisfying. Unfortunately, despite liking Katya and Starbird a lot, the rest of the story wasn't compelling enough to make me want to buy it, particularly since the series apparently goes through another three books before reaching a real ending. I enjoyed parts of this book, particularly Katya and Starbird feeling each other out and discovering similarities in their outlook. Katya teasing Starbird, and Starbird teasing herself, over her mother's choice of her clothing was probably the best part. It's not bad for what it's trying to do, but I think it's a bit too generic and not satisfying enough to really recommend. Followed by For Want of a Fiend. Rating: 6 out of 10

31 July 2015

Simon Kainz: DUCK challenge: week 4

The DUCK challenge is making a quite stable progress: in the last 4 weeks there were approximately 12.25 packages fixed and uploaded per week. In the current week the following packages were fixed and uploaded into unstable: So we had 14 packages fixed and uploaded by 10 different uploaders. A big "Thank You" to you!! Since the start of this challenge, a total of 49 packages, uploaded by 31 different persons were fixed. Here is a quick overview:
Week 1 Week 2 Week 3 Week 4 Week 5 Week 6 Week 7
# Packages 10 15 10 14 - - -
Total 10 25 35 49 - - -
The list of the fixed and updated packages is availabe here. I will try to update this ~daily. If I missed one of your uploads, please drop me a line. DebConf15 is approaching quite fast, so please get involved: The DUCK Challenge is running until end of DebConf15! Pevious articles are here: Week 1, Week 2, Week 3.

30 July 2015

Steve Kemp: The differences in Finland start at home.

So we're in Finland, and the differences start out immediately. We're renting a flat, in building ten, on a street. You'd think "10 Streetname" was a single building, but no. It is a pair of buildings: 10A, and 10B. Both of the buildings have 12 flats in them, with 10A having 1-12, and 10B having 13-24. There's a keypad at the main entrance, which I assumed was to let you press a button and talk to the people inside "Hello I'm the postmaster", but no. There is no intercom system, instead you type in a magic number and the door opens. The magic number? Sounds like you want to keep that secret, since it lets people into the common-area? No. Everybody has it. The postman, the cleaners, the DHL delivery man, and all the ex-tenants. We invited somebody over recently and gave it out in advance so that they could knock on our flat-door. Talking of cleaners: In the UK I lived in a flat and once a fortnight somebody would come and sweep the stair-well, since we didn't ever agree to do it ourselves. Here somebody turns up every day, be it to cut the grass, polish the hand-rail, clean the glass on the front-door, or mop the floors of the common area. Sounds awesome. But they cut the grass, right outside our window, at 7:30AM. On the dot. (Or use a leaf-blower, or something equally noisy.) All this communal-care is paid for by the building-association, of which all flat-owners own shares. Sounds like something we see in England, or even like Americas idea of a Home-Owners-Association. (In Scotland you own your own flat, you don't own shares of an entity which owns the complete building. I guess there are pros and cons to both approaches.) Moving onwards other things are often the same, but the differences when you spot them are odd. I'm struggling to think of them right now, somebody woke me up by cutting our grass for the second time this week (!) Anyway I'm registered now with the Finnish government, and have a citizen-number, which will be useful, I've got an appointment booked to register with the police - which is something I had to do as a foreigner within the first three months - and today I've got an appointment with a local bank so that I can have a euro-bank-account. Happily I did find a gym to join, the owner came over one Sunday to give me a tiny-tour, and then gave me a list of other gyms to try if his wasn't good enough - which was a nice touch - I joined a couple of days later, his gym is awesome. (I'm getting paid in UK-pounds, to a UK-bank, so right now I'm getting local money by transferring to my wifes account here, but I want to do that to my own, and open a shared account for paying for rent, electricity, internet, water, & etc). My flat back home is still not rented, because the nice property management company lost my keys. Yeah you can't make that up can you? With a bit of luck the second set of keys I mailed them will arrive soon and the damn thing can be occupied, while I'm not relying on that income I do wish to have it.

27 July 2015

Michael Stapelberg: dh-make-golang: creating Debian packages from Go packages

Recently, the pkg-go team has been quite busy, uploading dozens of Go library packages in order to be able to package gcsfuse (a user-space file system for interacting with Google Cloud Storage) and InfluxDB (an open-source distributed time series database). Packaging Go library packages (!) is a fairly repetitive process, so before starting my work on the dependencies for gcsfuse, I started writing a tool called dh-make-golang. Just like dh-make itself, the goal is to automatically create (almost) an entire Debian package. As I worked my way through the dependencies of gcsfuse, I refined how the tool works, and now I believe it s good enough for a first release. To demonstrate how the tool works, let s assume we want to package the Go library github.com/jacobsa/ratelimit:
midna /tmp $ dh-make-golang github.com/jacobsa/ratelimit
2015/07/25 18:25:39 Downloading "github.com/jacobsa/ratelimit/..."
2015/07/25 18:25:53 Determining upstream version number
2015/07/25 18:25:53 Package version is "0.0~git20150723.0.2ca5e0c"
2015/07/25 18:25:53 Determining dependencies
2015/07/25 18:25:55 
2015/07/25 18:25:55 Packaging successfully created in /tmp/golang-github-jacobsa-ratelimit
2015/07/25 18:25:55 
2015/07/25 18:25:55 Resolve all TODOs in itp-golang-github-jacobsa-ratelimit.txt, then email it out:
2015/07/25 18:25:55     sendmail -t -f < itp-golang-github-jacobsa-ratelimit.txt
2015/07/25 18:25:55 
2015/07/25 18:25:55 Resolve all the TODOs in debian/, find them using:
2015/07/25 18:25:55     grep -r TODO debian
2015/07/25 18:25:55 
2015/07/25 18:25:55 To build the package, commit the packaging and use gbp buildpackage:
2015/07/25 18:25:55     git add debian && git commit -a -m 'Initial packaging'
2015/07/25 18:25:55     gbp buildpackage --git-pbuilder
2015/07/25 18:25:55 
2015/07/25 18:25:55 To create the packaging git repository on alioth, use:
2015/07/25 18:25:55     ssh git.debian.org "/git/pkg-go/setup-repository golang-github-jacobsa-ratelimit 'Packaging for golang-github-jacobsa-ratelimit'"
2015/07/25 18:25:55 
2015/07/25 18:25:55 Once you are happy with your packaging, push it to alioth using:
2015/07/25 18:25:55     git push git+ssh://git.debian.org/git/pkg-go/packages/golang-github-jacobsa-ratelimit.git --tags master pristine-tar upstream
The ITP is often the most labor-intensive part of the packaging process, because any number of auto-detected values might be wrong: the repository owner might not be the Upstream Author , the repository might not have a short description, the long description might need some adjustments or the license might not be auto-detected.
midna /tmp $ cat itp-golang-github-jacobsa-ratelimit.txt
From: "Michael Stapelberg" <stapelberg AT debian.org>
To: submit@bugs.debian.org
Subject: ITP: golang-github-jacobsa-ratelimit -- Go package for rate limiting
Content-Type: text/plain; charset=utf-8
Content-Transfer-Encoding: 8bit
Package: wnpp
Severity: wishlist
Owner: Michael Stapelberg <stapelberg AT debian.org>
* Package name    : golang-github-jacobsa-ratelimit
  Version         : 0.0~git20150723.0.2ca5e0c-1
  Upstream Author : Aaron Jacobs
* URL             : https://github.com/jacobsa/ratelimit
* License         : Apache-2.0
  Programming Lang: Go
  Description     : Go package for rate limiting
 GoDoc (https://godoc.org/github.com/jacobsa/ratelimit)
 .
 This package contains code for dealing with rate limiting. See the
 reference (http://godoc.org/github.com/jacobsa/ratelimit) for more info.
TODO: perhaps reasoning
midna /tmp $
After filling in all the TODOs in the file, let s mail it out and get a sense of what else still needs to be done:
midna /tmp $ sendmail -t -f < itp-golang-github-jacobsa-ratelimit.txt
midna /tmp $ cd golang-github-jacobsa-ratelimit
midna /tmp/golang-github-jacobsa-ratelimit master $ grep -r TODO debian
debian/changelog:  * Initial release (Closes: TODO) 
midna /tmp/golang-github-jacobsa-ratelimit master $
After filling in these TODOs as well, let s have a final look at what we re about to build:
midna /tmp/golang-github-jacobsa-ratelimit master $ head -100 debian/**/*
==> debian/changelog <==                            
golang-github-jacobsa-ratelimit (0.0~git20150723.0.2ca5e0c-1) unstable; urgency=medium
  * Initial release (Closes: #793646)
 -- Michael Stapelberg <stapelberg@debian.org>  Sat, 25 Jul 2015 23:26:34 +0200
==> debian/compat <==
9
==> debian/control <==
Source: golang-github-jacobsa-ratelimit
Section: devel
Priority: extra
Maintainer: pkg-go <pkg-go-maintainers@lists.alioth.debian.org>
Uploaders: Michael Stapelberg <stapelberg@debian.org>
Build-Depends: debhelper (>= 9),
               dh-golang,
               golang-go,
               golang-github-jacobsa-gcloud-dev,
               golang-github-jacobsa-oglematchers-dev,
               golang-github-jacobsa-ogletest-dev,
               golang-github-jacobsa-syncutil-dev,
               golang-golang-x-net-dev
Standards-Version: 3.9.6
Homepage: https://github.com/jacobsa/ratelimit
Vcs-Browser: http://anonscm.debian.org/gitweb/?p=pkg-go/packages/golang-github-jacobsa-ratelimit.git;a=summary
Vcs-Git: git://anonscm.debian.org/pkg-go/packages/golang-github-jacobsa-ratelimit.git
Package: golang-github-jacobsa-ratelimit-dev
Architecture: all
Depends: $ shlibs:Depends ,
         $ misc:Depends ,
         golang-go,
         golang-github-jacobsa-gcloud-dev,
         golang-github-jacobsa-oglematchers-dev,
         golang-github-jacobsa-ogletest-dev,
         golang-github-jacobsa-syncutil-dev,
         golang-golang-x-net-dev
Built-Using: $ misc:Built-Using 
Description: Go package for rate limiting
 This package contains code for dealing with rate limiting. See the
 reference (http://godoc.org/github.com/jacobsa/ratelimit) for more info.
==> debian/copyright <==
Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: ratelimit
Source: https://github.com/jacobsa/ratelimit
Files: *
Copyright: 2015 Aaron Jacobs
License: Apache-2.0
Files: debian/*
Copyright: 2015 Michael Stapelberg <stapelberg@debian.org>
License: Apache-2.0
Comment: Debian packaging is licensed under the same terms as upstream
License: Apache-2.0
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.
 You may obtain a copy of the License at
 .
 http://www.apache.org/licenses/LICENSE-2.0
 .
 Unless required by applicable law or agreed to in writing, software
 distributed under the License is distributed on an "AS IS" BASIS,
 WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 See the License for the specific language governing permissions and
 limitations under the License.
 .
 On Debian systems, the complete text of the Apache version 2.0 license
 can be found in "/usr/share/common-licenses/Apache-2.0".
==> debian/gbp.conf <==
[DEFAULT]
pristine-tar = True
==> debian/rules <==
#!/usr/bin/make -f
export DH_GOPKG := github.com/jacobsa/ratelimit
%:
	dh $@ --buildsystem=golang --with=golang
==> debian/source <==
head: error reading  debian/source : Is a directory
==> debian/source/format <==
3.0 (quilt)
midna /tmp/golang-github-jacobsa-ratelimit master $
Okay, then. Let s give it a shot and see if it builds:
midna /tmp/golang-github-jacobsa-ratelimit master $ git add debian && git commit -a -m 'Initial packaging'
[master 48f4c25] Initial packaging                                                      
 7 files changed, 75 insertions(+)
 create mode 100644 debian/changelog
 create mode 100644 debian/compat
 create mode 100644 debian/control
 create mode 100644 debian/copyright
 create mode 100644 debian/gbp.conf
 create mode 100755 debian/rules
 create mode 100644 debian/source/format
midna /tmp/golang-github-jacobsa-ratelimit master $ gbp buildpackage --git-pbuilder
[ ]
midna /tmp/golang-github-jacobsa-ratelimit master $ lintian ../golang-github-jacobsa-ratelimit_0.0\~git20150723.0.2ca5e0c-1_amd64.changes
I: golang-github-jacobsa-ratelimit source: debian-watch-file-is-missing
P: golang-github-jacobsa-ratelimit-dev: no-upstream-changelog
I: golang-github-jacobsa-ratelimit-dev: extended-description-is-probably-too-short
midna /tmp/golang-github-jacobsa-ratelimit master $
This package just built (as it should!), but occasionally one might need to disable a test and file an upstream bug about it. So, let s push this package to pkg-go and upload it:
midna /tmp/golang-github-jacobsa-ratelimit master $ ssh git.debian.org "/git/pkg-go/setup-repository golang-github-jacobsa-ratelimit 'Packaging for golang-github-jacobsa-ratelimit'"
Initialized empty shared Git repository in /srv/git.debian.org/git/pkg-go/packages/golang-github-jacobsa-ratelimit.git/
HEAD is now at ea6b1c5 add mrconfig for dh-make-golang
[master c5be5a1] add mrconfig for golang-github-jacobsa-ratelimit
 1 file changed, 3 insertions(+)
To /git/pkg-go/meta.git
   ea6b1c5..c5be5a1  master -> master
midna /tmp/golang-github-jacobsa-ratelimit master $ git push git+ssh://git.debian.org/git/pkg-go/packages/golang-github-jacobsa-ratelimit.git --tags master pristine-tar upstream
Counting objects: 31, done.
Delta compression using up to 8 threads.
Compressing objects: 100% (25/25), done.
Writing objects: 100% (31/31), 18.38 KiB   0 bytes/s, done.
Total 31 (delta 2), reused 0 (delta 0)
To git+ssh://git.debian.org/git/pkg-go/packages/golang-github-jacobsa-ratelimit.git
 * [new branch]      master -> master
 * [new branch]      pristine-tar -> pristine-tar
 * [new branch]      upstream -> upstream
 * [new tag]         upstream/0.0_git20150723.0.2ca5e0c -> upstream/0.0_git20150723.0.2ca5e0c
midna /tmp/golang-github-jacobsa-ratelimit master $ cd ..
midna /tmp $ debsign golang-github-jacobsa-ratelimit_0.0\~git20150723.0.2ca5e0c-1_amd64.changes
[ ]
midna /tmp $ dput golang-github-jacobsa-ratelimit_0.0\~git20150723.0.2ca5e0c-1_amd64.changes   
Uploading golang-github-jacobsa-ratelimit using ftp to ftp-master (host: ftp.upload.debian.org; directory: /pub/UploadQueue/)
[ ]
Uploading golang-github-jacobsa-ratelimit_0.0~git20150723.0.2ca5e0c-1.dsc
Uploading golang-github-jacobsa-ratelimit_0.0~git20150723.0.2ca5e0c.orig.tar.bz2
Uploading golang-github-jacobsa-ratelimit_0.0~git20150723.0.2ca5e0c-1.debian.tar.xz
Uploading golang-github-jacobsa-ratelimit-dev_0.0~git20150723.0.2ca5e0c-1_all.deb
Uploading golang-github-jacobsa-ratelimit_0.0~git20150723.0.2ca5e0c-1_amd64.changes
midna /tmp $ cd golang-github-jacobsa-ratelimit 
midna /tmp/golang-github-jacobsa-ratelimit master $ git tag debian/0.0_git20150723.0.2ca5e0c-1
midna /tmp/golang-github-jacobsa-ratelimit master $ git push git+ssh://git.debian.org/git/pkg-go/packages/golang-github-jacobsa-ratelimit.git --tags master pristine-tar upstream
Total 0 (delta 0), reused 0 (delta 0)
To git+ssh://git.debian.org/git/pkg-go/packages/golang-github-jacobsa-ratelimit.git
 * [new tag]         debian/0.0_git20150723.0.2ca5e0c-1 -> debian/0.0_git20150723.0.2ca5e0c-1
midna /tmp/golang-github-jacobsa-ratelimit master $
Thanks for reading this far, and I hope dh-make-golang makes your life a tiny bit easier. As dh-make-golang just entered Debian unstable, you can install it using apt-get install dh-make-golang. If you have any feedback, I m eager to hear it.

Dirk Eddelbuettel: Evading the "Hadley tax": Faster Travis tests for R

Hadley is a popular figure, and rightly so as he successfully introduced many newcomers to the wonders offered by R. His approach strikes some of us old greybeards as wrong---I particularly take exception with some of his writing which frequently portrays a particular approach as both the best and only one. Real programming, I think, is often a little more nuanced and aware of tradeoffs which need to be balanced. As a book on another language once popularized: "There is more than one way to do things." But let us leave this discussion for another time. As the reach of the Hadleyverse keeps spreading, we sometimes find ourselves at the receiving end of a cost/benefit tradeoff. That is what this post is about, and it uses a very concrete case I encountered yesterday. As blogged earlier, the RcppZiggurat package was updated. I had not touched it in a year, but Brian Ripley had sent a brief and detailed note concerning something flagged by the Solaris compiler (correctly suggesting I replace fabs() with abs() on integer types). (Allow me to stray from the main story line here for a second to stress just how insane a work load he is carrying, essentially for all of us. R and the R community are so just so indebted to him for all his work---which makes the usual social media banter about him so unfortunate. But that too shall be left for another time.) Upon making the simple fix, and submitting to GitHub the usual Travis CI was triggered. And here is what I saw: first travis build in a year
All happy, all green. Previous build a year ago, most recent build yesterday, both passed. But hold on: test time went from 2:54 minutes to 7:47 minutes for an increase of almost five minutes! And I knew that I had not added any new dependencies, or altered any build options. What did happen was that among the dependencies of my package, one had decided to now also depend on ggplot2. Which leads to a chain of sixteen additional packages being loaded besides the four I depend upon---when it used to be just one. And that took five minutes as all those packages are installed from source, and some are big and take a long time to compile. There is however and easy alternative, and for that we have to praise Michael Rutter who looks after a number of things for R on Ubuntu. Among these are the R builds for Ubuntu but also the rrutter PPA as well as the c2d4u PPA. If you have not heard this alphabet soup before, a PPA is a package repository for Ubuntu where anyone (who wants to sign up) can upload (properly setup) source files which are then turned into Ubuntu binaries. With full dependency resolution and all other goodies we have come to expect from the Debian / Ubuntu universe. And Michael uses this facility with great skill and calm to provide us all with Ubuntu binaries for R itself (rebuilding what yours truly uploads into Debian), as well as a number of key packages available via the CRAN mirrors. Less know however is this "c2d4u" which stands for CRAN to Debian for Ubuntu. And this builds on something Charles Blundell once built under my mentorship in a Google Summer of Code. And Michael does a tremdous job covering well over a thousand CRAN source packages---and providing binaries for all. Which we can use for Travis! What all that means is that I could now replace the line
 - ./travis-tool.sh install_r RcppGSL rbenchmark microbenchmark highlight
which implies source builds of the four listed packages and all their dependencies with the following line implying binary installations of already built packages:
 - ./travis-tool.sh install_aptget libgsl0-dev r-cran-rcppgsl r-cran-rbenchmark r-cran-microbenchmark r-cran-highlight
In this particular case I also needed to build a binary package of my RcppGSL package as this one is not (yet) handled by Michael. I happen to have (re-)discovered the beauty of PPAs for Travis earlier this year and revitalized an older and largely dormant launchpad account I had for this PPA of mine. How to build a simple .deb package will also have to left for a future post to keep this more concise. This can be used with the existing r-travis setup---but one needs to use the older, initial variant in order to have the ability to install .deb packages. So in the .travis.yml of RcppZiggurat I just use
before_install:
## PPA for Rcpp and some other packages
- sudo add-apt-repository -y ppa:edd/misc
## r-travis by Craig Citro et al
- curl -OL http://raw.github.com/craigcitro/r-travis/master/scripts/travis-tool.sh
- chmod 755 ./travis-tool.sh
- ./travis-tool.sh bootstrap
to add my own PPA and all is good. If you do not have a PPA, or do not want to create your own packages you can still benefit from the PPAs by Michael and "mix and match" by installing from binary what is available, and from source what is not. Here we were able to use an all-binary approach, so let's see the resulting performance: latest travis build
Now we are at 1:03 to 1:15 minutes---much better. So to conclude, while the every expanding universe of R packages is fantastic for us as users, it can be seen to be placing a burden on us as developers when installing and testing. Fortunately, the packaging infrastructure built on top of Debian / Ubuntu packages can help and dramatically reduce build (and hence test) times. Learning about PPAs can be a helpful complement to learning about Travis and continued integration. So maybe now I need a new reason to blame Hadley? Well, there is always snake case ...

Follow-up: The post got some pretty immediate feedback shortly after I posted it. Craig Citro pointed out (quite correctly) that I could use r_binary_install which would also install the Ubuntu binaries based on their R packages names. Having built R/CRAN packages for Debian for so long, I am simply more used to the r-cran-* notations, and I think I was also the one contributing install_aptget to r-travis ... Yihui Xie spoke up for the "new" Travis approach deploying containers, caching of packages and explicit whitelists. It was in that very (GH-based) discussion that I started to really lose faith in the new Travis approach as they want use to whitelist each and every package. With 6900 and counting at CRAN I fear this simply does not scale. But different approaches are certainly welcome. I posted my 1:03 to 1:15 minutes result. If the "New School" can do it faster, I'd be all ears.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

26 July 2015

Lunar: Reproducible builds: week 12 in Stretch cycle

What happened in the reproducible builds effort this week: Toolchain fixes Eric Dorlan uploaded automake-1.15/1:1.15-2 which makes the output of mdate-sh deterministic. Original patch by Reiner Herrmann. Kenneth J. Pronovici uploaded epydoc/3.0.1+dfsg-8 which now honors SOURCE_DATE_EPOCH. Original patch by Reiner Herrmann. Chris Lamb submitted a patch to dh-python to make the order of the generated maintainer scripts deterministic. Chris also offered a fix for a source of non-determinism in dpkg-shlibdeps when packages have alternative dependencies. Dhole provided a patch to add support for SOURCE_DATE_EPOCH to gettext. Packages fixed The following 78 packages became reproducible in our setup due to changes in their build dependencies: chemical-mime-data, clojure-contrib, cobertura-maven-plugin, cpm, davical, debian-security-support, dfc, diction, dvdwizard, galternatives, gentlyweb-utils, gifticlib, gmtkbabel, gnuplot-mode, gplanarity, gpodder, gtg-trace, gyoto, highlight.js, htp, ibus-table, impressive, jags, jansi-native, jnr-constants, jthread, jwm, khronos-api, latex-coffee-stains, latex-make, latex2rtf, latexdiff, libcrcutil, libdc0, libdc1394-22, libidn2-0, libint, libjava-jdbc-clojure, libkryo-java, libphone-ui-shr, libpicocontainer-java, libraw1394, librostlab-blast, librostlab, libshevek, libstxxl, libtools-logging-clojure, libtools-macro-clojure, litl, londonlaw, ltsp, macsyfinder, mapnik, maven-compiler-plugin, mc, microdc2, miniupnpd, monajat, navit, pdmenu, pirl, plm, scikit-learn, snp-sites, sra-sdk, sunpinyin, tilda, vdr-plugin-dvd, vdr-plugin-epgsearch, vdr-plugin-remote, vdr-plugin-spider, vdr-plugin-streamdev, vdr-plugin-sudoku, vdr-plugin-xineliboutput, veromix, voxbo, xaos, xbae. The following packages became reproducible after getting fixed: Some uploads fixed some reproducibility issues but not all of them: Patches submitted which have not made their way to the archive yet: reproducible.debian.net The statistics on the main page of reproducible.debian.net are now updated every five minutes. A random unreviewed package is suggested in the look at a package form on every build. (h01ger) A new package set based new on the Core Internet Infrastructure census has been added. (h01ger) Testing of FreeBSD has started, though no results yet. More details have been posted to the freebsd-hackers mailing list. The build is run on a new virtual machine running FreeBSD 10.1 with 3 cores and 6 GB of RAM, also sponsored by Profitbricks. strip-nondeterminism development Andrew Ayer released version 0.009 of strip-nondeterminism. The new version will strip locales from Javadoc, include the name of files causing errors, and ignore unhandled (but rare) zip64 archives. debbindiff development Lunar continued its major refactoring to enhance code reuse and pave the way to fuzzy-matching and parallel processing. Most file comparators have now been converted to the new class hierarchy. In order to support for archive formats, work has started on packaging Python bindings for libarchive. While getting support for more archive formats with a common interface is very nice, libarchive is a stream oriented library and might have bad performance with how debbindiff currently works. Time will tell if better solutions need to be found. Documentation update Lunar started a Reproducible builds HOWTO intended to explain the different aspects of making software build reproducibly to the different audiences that might have to get involved like software authors, producers of binary packages, and distributors. Package reviews 17 obsolete reviews have been removed, 212 added and 46 updated this week. 15 new bugs for packages failing to build from sources have been reported by Chris West (Faux), and Mattia Rizzolo. Presentations Lunar presented Debian efforts and some recipes on making software build reproducibly at Libre Software Meeting 2015. Slides and a video recording are available. Misc. h01ger, dkg, and Lunar attended a Core Infrastructure Initiative meeting. The progress and tools mode for the Debian efforts were shown. Several discussions also helped getting a better understanding of the needs of other free software projects regarding reproducible builds. The idea of a global append only log, similar to the logs used for Certificate Transparency, came up on multiple occasions. Using such append only logs for keeping records of sources and build results has gotten the name Binary Transparency Logs . They would at least help identifying a compromised software signing key. Whether the benefits in using such logs justify the costs need more research.

25 July 2015

Dirk Eddelbuettel: Rcpp 0.12.0: Now with more Big Data!

big-data image A new release 0.12.0 of Rcpp arrived on the CRAN network for GNU R this morning, and I also pushed a Debian package upload. Rcpp has become the most popular way of enhancing GNU R with C++ code. As of today, 423 packages on CRAN depend on Rcpp for making analyses go faster and further. Note that this is 60 more packages since the last release in May! Also, BioConductor adds another 57 packages, and casual searches on GitHub suggests many more. And according to Andrie De Vries, Rcpp has now page rank of one on CRAN as well! And with this release, Rcpp also becomes ready for Big Data, or, as they call it in Texas, Data. Thanks to a lot of work and several pull requests by Qiang Kou, support for R_xlen_t has been added. That means we can now do stunts like
R> library(Rcpp)
R> big <- 2^31-1
R> bigM <- rep(NA, big)
R> bigM2 <- c(bigM, bigM)
R> cppFunction("double getSz(LogicalVector x)   return x.length();  ")
R> getSz(bigM)
[1] 2147483647
R> getSz(bigM2)
[1] 4294967294
R>
where prior versions of Rcpp would just have said
> getSz(bigM2)
Error in getSz(bigM2) :
  long vectors not supported yet: ../../src/include/Rinlinedfuns.h:137
>
which is clearly not Texas-style. Another wellcome change, also thanks to Qiang Kou, adds encoding support for strings. A lot of other things got polished. We are still improving exception handling as we still get the odd curveballs in a corner cases. Matt Dziubinski corrected the var() computation to use the proper two-pass method and added better support for lambda functions in Sugar expression using sapply(), Qiang Kou added more pull requests mostly for string initialization, and Romain added a pull request which made data frame creation a little more robust, and JJ was his usual self in tirelessly looking after all aspects of Rcpp Attributes. As always, you can follow the development via the GitHub repo and particularly the Issue tickets and Pull Requests. And any discussions, questions, ... regarding Rcpp are always welcome at the rcpp-devel mailing list. Last but not least, we are also extremely pleased to annouce that Qiang Kou has joined us in the Rcpp-Core team. We are looking forward to a lot more awesome! See below for a detailed list of changes extracted from the NEWS file.
Changes in Rcpp version 0.12.0 (2015-07-24)
  • Changes in Rcpp API:
    • Rcpp_eval() no longer uses R_ToplevelExec when evaluating R expressions; this should resolve errors where calling handlers (e.g. through suppressMessages()) were not properly respected.
    • All internal length variables have been changed from R_len_t to R_xlen_t to support vectors longer than 2^31-1 elements (via pull request 303 by Qiang Kou).
    • The sugar function sapply now supports lambda functions (addressing issue 213 thanks to Matt Dziubinski)
    • The var sugar function now uses a more robust two-pass method, supports complex numbers, with new unit tests added (via pull request 320 by Matt Dziubinski)
    • String constructors now allow encodings (via pull request 310 by Qiang Kou)
    • String objects are preserving the underlying SEXP objects better, and are more careful about initializations (via pull requests 322 and 329 by Qiang Kou)
    • DataFrame constructors are now a little more careful (via pull request 301 by Romain Francois)
    • For R 3.2.0 or newer, Rf_installChar() is used instead of Rf_install(CHAR()) (via pull request 332).
  • Changes in Rcpp Attributes:
    • Use more robust method of ensuring unique paths for generated shared libraries.
    • The evalCpp function now also supports the plugins argument.
    • Correctly handle signature termination characters (' ' or ';') contained in quotes.
  • Changes in Rcpp Documentation:
    • The Rcpp-FAQ vignette was once again updated with respect to OS X issues and Fortran libraries needed for e.g. RcppArmadillo.
    • The included Rcpp.bib bibtex file (which is also used by other Rcpp* packages) was updated with respect to its CRAN references.
Thanks to CRANberries, you can also look at a diff to the previous release As always, even fuller details are on the Rcpp Changelog page and the Rcpp page which also leads to the downloads page, the browseable doxygen docs and zip files of doxygen output for the standard formats. A local directory has source and documentation too. Questions, comments etc should go to the rcpp-devel mailing list off the R-Forge page.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

Steve Kemp: We're in Finland now.

So we've recently spent our first week together in Helsinki, Finland. Mostly this has been stress-free, but there are always oddities about living in new places, and moving to Europe didn't minimize them. For the moment I'll gloss over the differences and instead document the computer problem I had. Our previous shared-desktop system had a pair of drives configured using software RAID. I pulled one of the drives to use in a smaller-cased system (smaller so it was easier to ship). Only one drive of a pair being present make mdadm scream, via email, once per day, with reports of failure. The output of cat /proc/mdstat looked like this:
md2 : active raid1 sdb6[0] [LVM-storage-area]
      1903576896 blocks super 1.2 2 near-copies [2/1] [_U]
md1 : active raid10 sdb5[1] [/root]
      48794112 blocks super 1.2 2 near-copies [2/1] [_U]
md0 : active raid1 sdb1[0]  [/boot]
      975296 blocks super 1.2 2 near-copies [2/1] [_U]
See the "_" there? That's the missing drive. I couldn't remove the drive as it wasn't present on-disk, so this failed:
mdadm --fail   /dev/md0 /dev/sda1
mdadm --remove /dev/md0 /dev/sda1
# repeat for md1, md2.
Similarly removing all "detached" drives failed, so the only thing to do was to mess around re-creating the arrays with a single drive:
lvchange -a n shelob-vol
mdadm --stop /dev/md2
mdadm --create /dev/md2 --level=1 --raid-devices=1 /dev/sdb6 --force
..
I did that on the LVM-storage area, and the /boot partition, but "/" is still to be updated. I'll use knoppix/similar to do it next week. That'll give me a "RAID" system which won't alert every day. Thanks to the joys of re-creation the UUIDs of the devices changed, so /etc/mdadm/mdadm.conf needed updating. I realized that too late, when grub failed to show the menu, because it didn't find it's own UUID. Handy recipe for the future:
set prefix=(md/0)/grub/
insmod linux
linux (md/0)/vmlinuz-3.16.0-0.bpo.4-amd64 root=/dev/md1
initrd (md/0)//boot/initrd.img-3.16.0-0.bpo.4-amd64
boot

24 July 2015

Elena 'valhalla' Grandi: Old and new: furoshiki and electronics.

Old and new: furoshiki and electronics.

Yesterday at the local LUG (@Gruppo Linux Como ) somebody commented on the mix of old and new in my cloth-wrapped emergency electronics kit (you know, the kind of things you carry around with a microcontroller board http://espruino.com and a few components in case you suddenly have an idea for a project :-) ).

Immagine/fotohttp://social.gl-como.it/photos/valhalla/image/401bdd78db4a7eb8265a8119cb28c385

This is the kind of things it has right now: components tend to change in time.

Immagine/fotohttp://social.gl-como.it/photos/valhalla/image/7ba4c1372772b4d0374b655613f70c99

And yes, I admit I can only count up to 2, for higher numbers I carry a reference card :-)

Immagine/fotohttp://social.gl-como.it/photos/valhalla/image/2f544e5bef5c08c4ce9490865d22208a

Anyway, there was a bit of conversation on how this looked like a grandmother-ish thing, especially since it was in the same bag with a knitted WIP sock, and I mentioned the Japanese #furoshiki revival and how I believe that good old things are good, and good new things are good, and why not use them both?

Somebody else, who may or not be @Davide De Prisco asked me to let him have the links I mentioned, which include:

* Wikipedia page: Furoshiki https://en.wikipedia.org/wiki/Furoshiki
* Guide from the Japanese Ministry of the Environment on how to use a furoshiki http://www.env.go.jp/en/focus/attach/060403-5.html (and the article http://www.env.go.jp/en/focus/060403.html)
* A website with many other wrapping tecniques http://furoshiki.com/techniques/.

23 July 2015

Antoine Beaupr : Is it safe to use open wireless access points?

I sometimes get questions when people use my wireless access point, which, for as long as I can remember, has been open to everyone; that is without any form of password protection or encryption. I arguably don't use the access point much myself, as I prefer the wired connection for the higher bandwidth, security and reliability it provides. Apart from convenience for myself and visitors, the main reason why I leave my wireless access open is that I believe in a free (both as in beer and freedom) internet, built with principles of solidarity rather than exploitation and profitability. In these days of ubiquitous surveillance, freedom often goes hand in hand with anonymity, which implies providing free internet access to everyone. I also believe that, as more and more services get perniciously transferred to the global internet, access to the network is becoming a basic human right. This is therefore my small contribution to the struggle, now also part of the R seau Libre project. So here were my friends question, in essence:
My credit card info was stolen when I used a wifi hotspot in an airport... Should I use open wifi networks? Is it safe to use my credit card for shopping online?
Here is a modified version of an answer I sent to a friend recently which I thought could be useful to the larger internet community. The short answer is "sorry about that", "it depends, you generally can, but be careful" and "your credit card company is supposed to protect you".

Sorry! First off, sorry to hear that our credit card was stolen in an airport! That has to be annoying... Did the credit card company reimburse you? Normally, the whole point of credit cards is that they protect you in case of theft like this and they are supposed to reimburse you if you credit card gets stolen or abused...

The complexity and unreliability of passwords Now of course, securing every bit of your internet infrastructure helps in protecting against such attacks. However: there is a trade-off! First off, it does makes it more complicated for people to join the network. You need to make up some silly password (which has its own security problems: passwords can be surprisingly easy to guess!) that you will post on the fridge or worst, forget all the time! And if it's on the fridge, anyone with a view to that darn fridge, be it one-time visitor or sneaky neighbor, can find the password and steal your internet access (although, granted, that won't allow them to directly spy on your internet connection). In any case, if you choose to use a password, you should use the tricks I wrote in the koumbit wiki to generate the password and avoid writing it on the fridge.

The false sense of security of wireless encryption Second, it can also give a false sense of security: just because a wifi access point appears "secure" (ie. that the communication between your computer and the wifi access point is encrypted) doesn't mean the whole connection is secure. In fact, one attack that can be done against access points is exactly to masquerade as an existing access point, with no security security at all. That way, instead of connecting to the real secure and trusted access point, you connect to an evil one which spies on our connection. Most computers will happily connect to such a hotspot even with degraded security without warning. It may be what happened at the airport, in fact. Of course this particular attack would be less likely to happen if you live in the middle of the woods than an airport, but it's some important distinction to keep in mind, because the same attack can be performed after the wireless access point, for example by your countryside internet access provider or someone attacking it. Your best protection for your banking details is to rely on good passwords (for your back account) but also, and more importantly, what we call end-to-end encryption. That is usually implemented using the "HTTPS" with a pad lock icon in your address bar. This ensures that the communication between your computer and the bank or credit card company is secure, that is: that no wifi access point or attacker between your computer and them can intercept your credit card number.

The flaws of internet security Now unfortunately, even the HTTPS protocol doesn't bring complete security. For example, one attack that can be done is similar to the previous one and that is to masquerade as a legitimate bank site, but either strip out the encryption or even fake the encryption. So you also need to look at the address of the website you are visiting. Attackers are often pretty clever and will use many tricks to hide the real address of the website in the address bar. To work around this, I always explicitly type my bank website address (https://accesd.desjardins.com/ in my case) directly myself instead of clicking on links, bookmarks or using a search engine to find my bank site. In the case of credit cards, it is much trickier because when you buy stuff online, you end up putting that credit card number on different sites which you do not necessarily trust. There's no good solution but complaining to your credit card company if you believe a website you used has stolen your credit card details. You can also use services like Paypal, Dwolla or Bitcoin that hide your credit card details from the seller, if they support the service. I usually try to avoid putting my credit card details on sites I do not trust, and limit myself to known parties (e.g. Via Rail, Air Canada, etc). Also, in general, I try to assume the network connection between me and the website I visit is compromised. This forced me to get familiar with online security and use of encryption. It is more accessible to me than trying to secure the infrastructure i am using, because i often do not control it at all (e.g. internet cafes...). Internet security is unfortunately a hard problem, and things are not getting easier as more things move online. The burden is on us programmers and system administrators to create systems that are more secure and intuitive for our users so, as I said earlier, sorry the internet sucks so much, we didn't think so many people would join the acid trip of the 70s. ;)

Daniel Pocock: Unpaid work training Google's spam filters

This week, there has been increased discussion about the pain of spam filtering by large companies, especially Google. It started with Google's announcement that they are offering a service for email senders to know if their messages are wrongly classified as spam. Two particular things caught my attention: the statement that less than 0.05% of genuine email goes to the spam folder by mistake and the statement that this new tool to understand misclassification is only available to "help qualified high-volume senders". From there, discussion has proceeded with Linus Torvalds blogging about his own experience of Google misclassifying patches from Linux contributors as spam and that has been widely reported in places like Slashdot and The Register. Personally, I've observed much the same thing from the other perspective. While Torvalds complains that he isn't receiving email, I've observed that my own emails are not always received when the recipient is a Gmail address. It seems that Google expects their users work a little bit every day going through every message in the spam folder and explicitly clicking the "Not Spam" button: so that Google can improve their proprietary algorithms for classifying mail. If you just read or reply to a message in the folder without clicking the button, or if you don't do this for every message, including mailing list posts and other trivial notifications that are not actually spam, more important messages from the same senders will also continue to be misclassified. If you are not willing to volunteer your time to do this, or if you are simply one of those people who has better things to do, Google's Gmail service is going to have a corrosive effect on your relationships. A few months ago, we visited Australia and I sent emails to many people who I wanted to catch up with, including invitations to a family event. Some people received the emails in their inboxes yet other people didn't see them because the systems at Google (and other companies, notably Hotmail) put them in a spam folder. The rate at which this appeared to happen was definitely higher than the 0.05% quoted in the Google article above. Maybe the Google spam filters noticed that I haven't sent email to some members of the extended family for a long time and this triggered the spam algorithm? Yet it was at that very moment that we were visiting Australia that email needs to work reliably with that type of contact as we don't fly out there every year. A little bit earlier in the year, I was corresponding with a few students who were applying for Google Summer of Code. Some of them also observed the same thing, they sent me an email and didn't receive my response until they were looking in their spam folder a few days later. Last year I know a GSoC mentor who lost track of a student for over a week because of Google silently discarding chat messages, so it appears Google has not just shot themselves in the foot, they managed to shoot their foot twice. What is remarkable is that in both cases, the email problems and the XMPP problems, Google doesn't send any error back to the sender so that they know their message didn't get through. Instead, it is silently discarded or left in a spam folder. This is the most corrosive form of communication problem as more time can pass before anybody realizes that something went wrong. After it happens a few times, people lose a lot of confidence in the technology itself and try other means of communication which may be more expensive, more synchronous and time intensive or less private. When I discussed these issues with friends, some people replied by telling me I should send them things through Facebook or WhatsApp, but each of those services has a higher privacy cost and there are also many other people who don't use either of those services. This tends to fragment communications even more as people who use Facebook end up communicating with other people who use Facebook and excluding all the people who don't have time for Facebook. On top of that, it creates more tedious effort going to three or four different places to check for messages. Despite all of this, the suggestion that Google's only response is to build a service to "help qualified high-volume senders" get their messages through leaves me feeling that things will get worse before they start to get better. There is no mention in the Google announcement about what they will offer to help the average person eliminate these problems, other than to stop using Gmail or spend unpaid time meticulously training the Google spam filter and hoping everybody else does the same thing. Some more observations on the issue Many spam filtering programs used in corporate networks, such as SpamAssassin, add headers to each email to suggest why it was classified as spam. Google's systems don't appear to give any such feedback to their users or message senders though, just a very basic set of recommendations for running a mail server. Many chat protocols work with an explicit opt-in. Before you can exchange messages with somebody, you must add each other to your buddy lists. Once you do this, virtually all messages get through without filtering. Could this concept be adapted to email, maybe giving users a summary of messages from people they don't have in their contact list and asking them to explicitly accept or reject each contact? If a message spends more than a week in the spam folder and Google detects that the user isn't ever looking in the spam folder, should Google send a bounce message back to the sender to indicate that Google refused to deliver it to the inbox? I've personally heard that misclassification occurs with mailing list posts as well as private messages.

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