Search Results: "nate"

8 November 2025

Thorsten Alteholz: My Debian Activities in October 2025

Debian LTS This was my hundred-thirty-sixth month that I did some work for the Debian LTS initiative, started by Raphael Hertzog at Freexian. During my allocated time I uploaded or worked on: I also attended the monthly LTS/ELTS meeting. Debian ELTS This month was the eighty-seventh ELTS month. During my allocated time I uploaded or worked on: I also attended the monthly LTS/ELTS meeting. Debian Printing This month I uploaded a new upstream version or a bugfix version of: This work is generously funded by Freexian! Debian Astro This month I uploaded a new upstream version or a bugfix version of: Debian IoT Unfortunately I didn t found any time to work on this topic. Debian Mobcom This month I uploaded a new upstream version or a bugfix version of: misc This month I uploaded a new upstream version or a bugfix version of: On my fight against outdated RFPs, I closed 31 of them in October. I could even close one RFP by uploading the new package gypsy. Meanwhile only 3373 are still open, so don t hesitate to help closing one or another. FTP master This month I accepted 420 and rejected 45 packages. The overall number of packages that got accepted was 423. I would like to remind everybody that in case you don t agree with the removal of a package, please set the moreinfo tag on this bug. This is the only reliable way to prevent processing of that RM-bug. Well, there is a second way, of course you could also achieve this by closing the bug.

4 November 2025

Dirk Eddelbuettel: RcppCNPy 0.2.14 on CRAN: Minor Maintenance

Another (again somewhat minor) maintenance release of the RcppCNPy package arrived on CRAN just now. RcppCNPy provides R with read and write access to NumPy files thanks to the cnpy library by Carl Rogers along with Rcpp for the glue to R. The changes are all minor chores. As R now checks usage of packages in demos, we added the rbenchmark to Suggests: in DESCRIPTION. We refreshed the main continuous integration script for a minor update, and also replaced one URL in a badge to avoid a timeout during checks at CRAN. So nothing user-facing this time! Full details are below.

Changes in version 0.2.14 (2024-11-03)
  • The rbenchmark package is now a Suggests: as it appears in demo
  • The continuous integration setup now uses r-ci with its embedded setup step
  • The URL used for the GPL-2 is now the R Project copy

CRANberries also provides a diffstat report for the latest release. As always, feedback is welcome and the best place to start a discussion may be the GitHub issue tickets page. If you like this or other open-source work I do, you can now sponsor me at GitHub.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

3 November 2025

Dirk Eddelbuettel: duckdb-mlpack 0.0.3: macOS binaries, unit tests, more outputs

A littler two weeks a short post announced the duckdb-mlpack as ML quacks : combining the powerful C++ machine learning library mlpack with the amazing analytical database engine duckdb. About a week ago another short post covered first extensions. We actually followed-up with release 0.0.3 days later, and never posted about it so this short note catches up. In release 0.0.3, we provide macOS binaries: following a known issue with one of the components, we apply a simple patch to enable the build. Next up are wasm and windows, if you know your way around these platforms please get in touch. Release 0.0.3 also added first unit tests, serializes the coefficients from the (regularized) linear regression into the output table. See see two previous posts linked above for details and background, the repo for code, issues and more, and the extension page for more about this duckdb community extension.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. If you like this or other open-source work I do, you can sponsor me at GitHub.

Russ Allbery: Review: The Raven Scholar

Review: The Raven Scholar, by Antonia Hodgson
Series: Eternal Path Trilogy #1
Publisher: Orbit
Copyright: April 2025
ISBN: 0-316-57723-5
Format: Kindle
Pages: 651
The Raven Scholar is an epic fantasy and the first book of a projected trilogy. It is Antonia Hodgson's first published fantasy novel; her previous published novels are historical mystery. I would classify this as adult fantasy the main character is thirty-four with a stable court position but it has strong YA vibes because of the generational turnover feel of the main plot. Eight years before the start of this book, Andren Valit attempted to assassinate the emperor and failed. Since then, his widow and three children twins Yana and Ruko and infant Nisthala have been living in disgrace in a cramped apartment, subject to constant inspections and suspicion. As the story opens, they have been summoned to appear before the emperor, escorted by a young and earnest Hound (essentially the state security services) named Shal Worthy. The resulting interrogation is full of dangerous traps. Not all of them will be avoided. The formalization of the consequences of that imperial summons falls to an unpopular Junior Archivist (Third Class) whose one notable skill is her penmanship. A meeting that was disasterous for the Valits becomes unexpectedly fortunate for the archivist, albeit with a poisonous core. Eight years later, Neema Kraa is High Scholar, and Emperor Bersun's twenty-four years of permitted reign is coming to an end. The Festival is about to begin. One representative from each of the empire's eight anats (religious schools) will compete in seven days of Trials, save for the Dragons who do not want the throne and will send a proxy. The victor according to the Trials scoring system will become emperor and reign unquestioned for twenty-four years or until resignation. This is the system that put an end to the era of chaos and has been in place for over a thousand years. On the eve of the Trials, the Raven contender is found murdered. Neema is immediately a suspect; she even has reasons to suspect herself. She volunteers to lead the investigation because she has to know what happened. She is also volunteered to be the replacement Raven contender. There is no chance that she will become emperor; she doesn't even know how to fight. But agnostic Neema has a rather unexpected ally.
As the last chime fades we drop neatly on to the balcony's rusting hand rail, folding our wings with a soft shuffle. Noon, on the ninth day of the eighth month, 1531. Neema Kraa's lodgings. We are here, exactly where we should be, at exactly the right moment, because we are the Raven, and we are magnificent.
The Raven Scholar is a rather good epic fantasy, with some caveats that I'll get to in a moment, but I found it even more fascinating as a genre artifact. I've read my share of epic fantasy over the years, although most of my familiarity of the current wave of new adult fairy epics comes from reviews rather than personal experience. The Raven Scholar is epic fantasy, through and through. There is court intrigue, a main character who is a court functionary unexpectedly thrown into the middle of some problem, civilization-wide stakes, dramatic political alliances, detailed magic and mythological systems, and gods. There were moments that reminded me of a Guy Gavriel Kay novel, although Hodgson's characters tend more towards disarming moments of humanization instead of Kay's operatic scenes of emotional intensity. But The Raven Scholar is also a murder mystery, complete with a crime scene, clues, suspects, evidence, an investigation, a possibly compromised detective, and a morass of possible motives and red herrings. I'm not much of a mystery reader, but this didn't feel like sort of ancillary mystery that might crop up in the course of a typical epic fantasy. It felt like a full-fledged investigation with an amateur detective; one can tell that Hodgson's previous four books were historical mysteries. And then there's the Trials, which are the centerpiece of the book. This book helped me notice that people (okay, me, I'm the people) have been sleeping on the influence of The Hunger Games, Battle Royale, and reality TV (specifically Survivor) on genre fiction, possibly because the more obvious riffs on the idea (Powerless, The Selection) have been young adult or new adult. Once I started looking, I realized this idea is everywhere now: Throne of Glass, Fourth Wing, even The Night Circus to some extent. Competitions with consequences are having a moment. I suspect having a competition to decide the next emperor is going to strike some traditional fantasy readers as sufficiently absurd and unbelievable that it will kick them out of the book. I had a moment of "okay, this is weird, why would anyone stick with this system for so long" myself. But I would encourage such readers to interrogate whether that's only a response from unfamiliarity; after all, strange women lying in ponds distributing swords is no basis for a system of government either. This is hardly the most unrealistic epic fantasy trope, and it has the advantage of being a hell of a plot generator when handled well. Hodgson handles it well. Society in this novel is structured around the anats and the eight Guardians, gods who, according to myth, had returned seven times previously to save the world, but who will destroy the world when they return again. Each Guardian represents a group of characteristics and useful societal functions: the Ox is trustworthy, competent and hard-working; the Fox is a trickster and a rule-bender; the Raven is shrewd and careful and is the Guardian of scholars and lawyers. Each Trial is organized by one of the anats and tests the contenders for the skills most valued by that Guardian, often in subtle and rather ingenious ways. There are flaws here that you could poke at if you wanted to, but I was charmed and thoroughly entertained by how well Hodgson weaves the story around the Trials and uses the conflicting values to create character conflict, unexpected alliances, and engrossing plot. Most importantly for a book of this sort, I liked Neema. She has a charming combination of competence, quirks (she is almost physically unable to not correct people's factual errors), insecurity, imposter syndrome, and determination. She is way out of her depth and knows it, but she has an ethical core and an insatiable curiosity that won't let her leave the central mysteries of the book alone. And the character dynamics are great; there are a lot of characters, including the competition problem of having to juggle eight contenders and give them all sufficient characterization to be meaningful, but this book uses its length to give each character some room to breathe. This is a long book, well over 600 pages, but it felt packed with events and plot twists. After every chapter I had to fight the urge to read just one more. The biggest drawback of this book is that it is very much the first book of a trilogy, none of the other volumes are out yet, and the ending is rather nasty. This is the sort of trilogy that opens with a whole lot of bad things happening, and while I am thoroughly hooked and will purchase the next volume as soon as it's available, I wish Hodgson had found a way to end the book on a somewhat more positive or hopeful note. The middle of the book was great; the end was a bit of an emotional slog, alas. The writing is good enough here that I'm fairly sure the depression will be worth it, but if you need your endings to be triumphant (and who could blame you in this moment in history), you may want to wait on this one until more volumes are out. Apart from that, though, this was a lot of fun. The Guardians felt like they came from a different strand of fantasy than you usually see in epic, more of a traditional folk tale vibe, which adds an intriguing twist to the epic fantasy setting. The characters all work, and Hodgson even pulls off some Game of Thrones style twists that make you sympathetic to characters you previously hated. The magic system apart from the Guardians felt underbaked, but the politics had more depth than a lot of fantasy novels. If you want the truly complex and twisty politics you would get from one of Guy Gavriel Kay's historical rewrites, you will come away disappointed, but it was good enough for me. And I did enjoy the Raven.
Respect, that's all we demand. Recognition of our magnificence. Offerings. Love. Fear. Trembling awe. Worship. Shiny things. Blood sacrifice, some of us very much enjoy blood sacrifice. Truly, we ask for so little.
Followed by an as-yet untitled sequel that I hope will materialize. Rating: 7 out of 10

28 October 2025

Russ Allbery: Review: Those Who Wait

Review: Those Who Wait, by Haley Cass
Publisher: Haley Cass
Copyright: 2020
ISBN: 979-8-9884929-1-7
Format: Kindle
Pages: 556
Those Who Wait is a stand-alone self-published sapphic romance novel. Given the lack of connection between political figures named in this book and our reality, it's also technically an alternate history, but it will be entirely unsatisfying to anyone who reads it in that genre. Sutton Spencer is an English grad student in New York City. As the story opens, she has recently realized that she's bisexual rather than straight. She certainly has not done anything about that revelation; the very thought makes her blush. Her friend and roommate Regan, not known for either her patience or her impulse control, decides to force the issue by stealing Sutton's phone, creating a profile on a lesbian dating app, and messaging the first woman Sutton admits being attracted to. Charlotte Thompson is a highly ambitious politician, current deputy mayor of New York City for health and human services, and granddaughter of the first female president of the United States. She fully intends to become president of the United States herself. The next step on that path is an open special election for a seat in the House of Representatives. With her family political connections and the firm support of the mayor of New York City (who is also dating her brother), she thinks she has an excellent shot of winning. Charlotte is also a lesbian, something she's known since she was a teenager and which still poses serious problems for a political career. She is therefore out to her family and a few close friends, but otherwise in the closet. Compared to her political ambitions, Charlotte considers her love life almost irrelevant, and therefore has a strict policy of limiting herself to anonymous one-night stands arranged on dating apps. Even that is about to become impossible given her upcoming campaign, but she indulges in one last glance at SapphicSpark before she deletes her account. Sutton is as far as possible from the sort of person who does one-night stands, which is a shame as far as Charlotte is concerned. It would have been a fun last night out. Despite that, both of them find the other unexpectedly enjoyable to chat with. (There are a lot of text message bubbles in this book.) This is when Sutton has her brilliant idea: Charlotte is charming, experienced, and also kind and understanding of Sutton's anxiety, at least in app messages. Maybe Charlotte can be her mentor? Tell her how to approach women, give her some guidance, point her in the right directions. Given the genre, you can guess how this (eventually) turns out. I'm going to say a lot of good things about this book, so let me get the complaints over with first. As you might guess from that introduction, Charlotte's political career and the danger of being outed are central to this story. This is a bit unfortunate because you should not, under any circumstances, attempt to think deeply about the politics in this book. In 550 pages, Charlotte does not mention or expound a single meaningful political position. You come away from this book as ignorant about what Charlotte wants to accomplish as a politician as you entered. Apparently she wants to be president because her grandmother was president and she thinks she'd be good at it. The closest the story comes to a position is something unbelievably vague about homeless services and Charlotte's internal assertion that she wants to help people and make real change. There are even transcripts of media interviews, later in the book, and they somehow manage to be more vacuous than US political talk shows, which is saying something. I also can't remember a single mention of fundraising anywhere in this book, which in US politics is absurd (although I will be generous and say this is due to Cass's alternate history). I assume this was a deliberate choice and Cass didn't want politics to distract from the romance, but as someone with a lot of opinions about concrete political issues, the resulting vague soft-liberal squishiness was actively off-putting. In an actual politician, this would be an entire clothesline of red flags. Thankfully, it's ignorable for the same reason; this is so obviously not the focus of the book that one can mostly perform the same sort of mental trick that one does when ignoring the backdrop in a cheap theater. My second complaint is that I don't know what Sutton does outside of the romance. Yes, she's an English grad student, and she does some grading and some vaguely-described work and is later referred to a prestigious internship, but this is as devoid of detail as Charlotte's political positions. It's not quite as jarring because Cass does eventually show Sutton helping concretely with her mother's work (about which I have some other issues that I won't get into), but it deprives Sutton of an opportunity to be visibly expert in something. The romance setup casts Charlotte as the experienced one to Sutton's naivete, and I think it would have been a better balance to give Sutton something concrete and tangible that she was clearly better at than Charlotte. Those complaints aside, I quite enjoyed this. It was a recommendation from the same BookTuber who recommended Delilah Green Doesn't Care, so her recommendations are quickly accumulating more weight. The chemistry between Sutton and Charlotte is quite believable; the dialogue sparkles, the descriptions of the subtle cues they pick up from each other are excellent, and it's just fun to read about how they navigate a whole lot of small (and sometimes large) misunderstandings and mismatches in personality and world view. Normally, misunderstandings are my least favorite part of a romance novel, but Sutton and Charlotte come from such different perspectives that their misunderstandings feel more justified than is typical. The characters are also fairly mature about working through them: Main characters who track the other character down and insist on talking when something happens they don't understand! Can you imagine! Only with the third-act breakup is the reader dragged through multiple chapters of both characters being miserable, and while I also usually hate third-act breakups, this one is so obviously coming and so clearly advertised from the initial setup that I couldn't really be mad. I did wish the payoff make-up scene at the end of the book had a bit more oomph, though; I thought Sutton's side of it didn't have quite the emotional catharsis that it could have had. I particularly enjoyed the reasons why the two characters fall in love, and how different they are. Charlotte is delighted by Sutton because she's awkward and shy but also straightforward and frequently surprisingly blunt, which fits perfectly with how much Charlotte is otherwise living in a world of polished politicians in constant control of their personas. Sutton's perspective is more physical, but the part I liked was the way that she treats Charlotte like a puzzle. Rather than trying to change how Charlotte expresses herself, she instead discovers that she's remarkably good at reading Charlotte if she trusts her instincts. There was something about Sutton's growing perceptiveness that I found quietly delightful. It's the sort of non-sexual intimacy that often gets lost among the big emotions in romance novels. The supporting cast was also great. Both characters have deep support networks of friends and family who are unambiguously on their side. Regan is pure chaos, and I would not be friends with her, but Cass shows her deep loyalty in a way that makes her dynamic with Sutton make sense. Both characters have thoughtful and loving families who support them but don't make decisions for them, which is a nice change of pace from the usually more mixed family situations of romance novel protagonists. There's a lot of emotional turbulence in the main relationship, and I think that only worked for me because of how rock-solid and kind the supporting cast is. This is, as you might guess from the title, a very slow burn, although the slow burn is for the emotional relationship rather than the physical one (for reasons that would be spoilers). As usual, I have no calibration for spiciness level, but I'd say that this was roughly on par with the later books in the Bright Falls series. If you know something about politics (or political history) and try to take that part of this book seriously, it will drive you to drink, but if you can put that aside and can deal with misunderstandings and emotional turmoil, this was both fun and satisfying. I liked both of the characters, I liked the timing of the alternating viewpoints, and I believed in the relationship and chemistry, as improbable and chaotic as some of the setup was. It's not the greatest thing I ever read, and I wish the ending was a smidgen stronger, but it was an enjoyable way to spend a few reading days. Recommended. Rating: 7 out of 10

27 October 2025

Dirk Eddelbuettel: #054: Faster r-ci Continuous Integration via r2u Container

Welcome to post 54 in the R4 series. The topic of continuous integration has been a recurrent theme here at the R4 series. Post #32 introducess r-ci, while post #41 brings r2u to r-ci, but does not show a matrix deployment. Post #45 describes the updated r-ci setup that is now the default and contains a macOS and Ubuntu matrix, where the latter relies on r2u to keep things fast, easy, reliable . Last but not least more recent post #52 shares a trick for ensuring coverage reports. Following #45, use of r-ci at for example GitHub Actions has seen steady use and very reliable performance. With the standard setup, a vanilla Ubuntu setup is changed into one supported by r2u. This requires downloading and installating a few Ubuntu packages, and has generally been fairly quick on the order of around fourty seconds. Now, the general variability of run-times for identical tasks in GitHub Actions is well documented by the results of the setup described in post #39 which still runs weekly. It runs the identical SQL query against a remote backend using two different package families. And lo and behold, the intra-method variability on unchanged code or setup and therefore due solely to system variability is about as large as the inter-method variability. In short, GitHub Actions performance varies randomly with significant variability. See the repo README.md for chart that updates weekly (and see #39 for background). Of late, this variability became more noticeable during standard GitHub Actions runs where it would regularly take more than two minutes of setup time before actual continuous integration work was done. Some caching seems to be in effect, so subsequent runs in the same repo seem faster and often came back to one minute or less. For lightweight and small packages, loosing two minutes to setup when the actual test time is a minute or less gets old fast. Looking around, we noticed that container use can be combined with matrix use. So we have now been deploying the following setup (not always over all the matrix elements though)
jobs:
  ci:
    strategy:
      matrix:
        include:
          -   name: container, os: ubuntu-latest, container: rocker/r2u4ci  
          -   name: macos,     os: macos-latest   
          -   name: ubuntu,    os: ubuntu-latest  

    runs-on: $  matrix.os  
    container: $  matrix.container  
GitHub Actions is smart enough to provide NULL for container in the two other cases, so container: $ matrix.container is ignored there. But when container is set as here for the ci-enhanced version of r2u (which adds a few binaries commonly needed such as git, curl, wget etc needed for CI) then the CI jobs runs inside the container. And thereby skips most of the setup time as the container is already prepared. This also required some small adjustments in the underlying shell script doing the work. To not disrupt standard deployment, we placed these into a release candidate / development version one can op into via an new variable dev_version
      - name: Setup
        uses: eddelbuettel/github-actions/r-ci@master
        with:
          dev_version: 'TRUE'
Everything else remains the same and works as before. But faster as much less time is spent on setup. You can see the actual full yaml file and actions in my repositories for rcpparmadillo and rcppmlpack-examples. Additional testing would be welcome, so feel free to deploy this in your actions now. Otherwise I will likely carry this over and make it the defaul in a few weeks time. It will still work as before but when the added container: line is used will run much faster thanks to rocker/r2u4ci being already set up for CI.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. If you like this or other open-source work I do, you can now sponsor me at GitHub.

Russ Allbery: Review: On Vicious Worlds

Review: On Vicious Worlds, by Bethany Jacobs
Series: Kindom Trilogy #2
Publisher: Orbit
Copyright: October 2024
ISBN: 0-316-46362-0
Format: Kindle
Pages: 444
On Vicious Worlds is a science fiction thriller with bits of cyberpunk and a direct sequel to These Burning Stars. This is one of those series where each book has massive spoilers for the previous book and builds on characters and situations from that book. I would not read it out of order. It is Bethany Jacobs's second novel. Whooboy, how to review this without spoilers. There are so many major twists in the first book with lingering consequences that it's nearly impossible. I said at the end of my review of These Burning Stars that I was impressed with the ending for reasons that I can't reveal. One thread of this book follows the aftermath: What do you do after the plan? If you have honed yourself for one purpose, can you repurpose yourself? The other thread of the book is a murder mystery. The protectors of the community are being picked off, one by one. The culprit might be a hacker so good that they are causing Jun, the expert hacker of the first book, serious problems. Meanwhile, the political fault lines of the community are cracking open under pressure, and the leaders are untested, exhausted, and navigating difficult emotional terrain. These two story threads alternate, and interspersed are yet more flashbacks. As with the first book, the flashbacks fill in the backstory of Chono and and Esek. This time, though, we get Six's viewpoint. The good news is that On Vicious Worlds tones down the sociopathy considerably without letting up on the political twists. This is the book where Chono comes into her own. She has much more freedom of action, despite being at the center of complicated and cut-throat politics, and I thoroughly enjoyed her principled solidity. She gets a chance to transcend her previous role as an abuse victim, and it's worth the wait. The bad news is that this is very much a middle book of a trilogy. While there are a lot of bloody battles, emotional drama, political betrayals, and plot twists, the series plot has not advanced much by the end of the book. I would not say the characters were left in the same position they started the character development is real and the perils have changed but neither would I say that any of the open questions from These Burning Stars have resolved. The last book I read used science-fiction world-building to tell a story about moral philosophy that was somewhat less drama-filled than one might have expected. That is so not the case here. On Vicious Worlds is, if anything, even more dramatic than the first book of the series. In Chono's thread, the slow burn attempt to understand Six's motives has been replaced with almost non-stop melodrama, full of betrayals, reversals, risky attempts, and emotional roller coasters. Jun's part of the story is a bit more sedate at first, but there too the interpersonal drama setting is headed towards 10. This is the novel equivalent of an action movie. Jun, and her part of the story, are fine. I like the new viewpoint character, I find their system of governance somewhat interesting (although highly optimized for small groups), and I think the climax worked. But I'm invested in this series for Chono and Six. Both of them, but particularly Six, are absurdly over the top, ten people's worth of drama stuffed into one character, unable to communicate in anything less than dramatic gestures and absurd plans, but I find them magnetically fascinating. I'm not sure if written characters can have charisma, but if so, they have it. I liked this entry in the series, but then I also liked the first book. It's trauma-filled and dramatic and involved a bit too much bloody maiming for my tastes, but this whole series is about revolutions and what happens when you decide to fight, and sometimes I'm in the mood for complicated and damaged action heroes who loathe oppression and want to kill some people. This is the sort of series book that will neither be the reason you read the series nor the reason why you stop reading. If you enjoyed These Burning Stars, this is more of the same, with arguably better character development but less plot catharsis. If you didn't like These Burning Stars, this probably won't change your mind, although if you hated it specifically because of Esek's sociopathy, I think you would find this book more congenial. But maybe not; Jacobs is still the same author, and most of the characters in this series are made of sharp edges. I'm still in; I have already pre-ordered the next book. Followed by This Brutal Moon, due out in December of 2025 and advertised as the conclusion. Rating: 7 out of 10

26 October 2025

Dirk Eddelbuettel: duckdb-mlpack 0.0.2: mlpack is now a duckdb community extension

A couple of days ago in a short post, I announced duckdb-mlpack as ML quacks : combining the powerful C++ machine learning library mlpack with the amazing analytical database engine duckdb. See that post for more background. The duckdb-mlpack package is now a community extension joining an impressive list of existing extensions. This means duckdb builds and distributes duckdb-mlpack for all supported platforms allowing users to just install the resulting (signed) binary. (We currently only support Linux in both arm64 and amd64, adding macOS should be straightforward once we sort one build issue out. Windows and WASM should work too, with a little love and polish, as both duckdb and mlpack support them.) Given the binary build, a simple
INSTALL mlpack FROM community;
LOAD mlpack;
installs and loads the package. By the duckdb convention the code is stored per-user and per-version, so the first line needs to be executed only once per duckdb release used. The second line is then per session. We also extended the capabilities of duckdb-mlpack. While still a MVP stressing minimal viable product, the two supported methods adaBoost and (regularized) linear regression both serialize and store their model object permitting rapid prediction on new data as shown in the adaBoost example:
-- Perform adaBoost (using weak learner 'Perceptron' by default)
-- Read 'features' into 'X', 'labels' into 'Y', use optional parameters
-- from 'Z', and prepare model storage in 'M'
CREATE TABLE X AS SELECT * FROM read_csv("https://eddelbuettel.github.io/duckdb-mlpack/data/iris.csv");
CREATE TABLE Y AS SELECT * FROM read_csv("https://eddelbuettel.github.io/duckdb-mlpack/data/iris_labels.csv");
CREATE TABLE Z (name VARCHAR, value VARCHAR);
INSERT INTO Z VALUES ('iterations', '50'), ('tolerance', '1e-7');
CREATE TABLE M (json VARCHAR);

-- Train model for 'Y' on 'X' using parameters 'Z', store in 'M'
CREATE TEMP TABLE A AS SELECT * FROM mlpack_adaboost("X", "Y", "Z", "M");

-- Count by predicted group
SELECT COUNT(*) as n, predicted FROM A GROUP BY predicted;

-- Model 'M' can be used to predict
CREATE TABLE N (x1 DOUBLE, x2 DOUBLE, x3 DOUBLE, x4 DOUBLE);
-- inserting approximate column mean values
INSERT INTO N VALUES (5.843, 3.054, 3.759, 1.199);
-- inserting approximate column mean values, min values, max values
INSERT INTO N VALUES (5.843, 3.054, 3.759, 1.199), (4.3, 2.0, 1.0, 0.1), (7.9, 4.4, 6.9, 2.5);
-- and this predict one element each
SELECT * FROM mlpack_adaboost_pred("N", "M");
Ryan and I have some ideas for where to go from here, ideally towards autogenerating bindings for most (if not all) methods as is done for the mlpack language bindings. Anybody interested and willing to help should reach out to us.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. If you like this or other open-source work I do, you can sponsor me at GitHub.

Russ Allbery: Review: Ancestral Night

Review: Ancestral Night, by Elizabeth Bear
Series: White Space #1
Publisher: Saga Press
Copyright: 2019
ISBN: 1-5344-0300-0
Format: Kindle
Pages: 501
Ancestral Night is a far-future space opera novel and the first of a series. It shares a universe with Bear's earier Jacob's Ladder trilogy, and there is a passing reference to the events of Grail that would be a spoiler if you put the pieces together, but it's easy to miss. You do not need to read the earlier series to read this book (although it's a good series and you might enjoy it). Halmey Dz is a member of the vast interstellar federation called the Synarche, which has put an end to war and other large-scale anti-social behavior through a process called rightminding. Every person has a neural implant that can serve as supplemental memory, off-load some thought processes, and, crucially, regulate neurotransmitters and hormones to help people stay on an even keel. It works, mostly. One could argue Halmey is an exception. Raised in a clade that took rightminding to an extreme of suppression of individual personality into a sort of hive mind, she became involved with a terrorist during her legally mandated time outside of her all-consuming family before she could make an adult decision to stay with them (essentially a rumspringa). The result was a tragedy that Halmey doesn't like to think about, one that's left deep emotional scars. But Halmey herself would argue she's not an exception: She's put her history behind her, found partners that she trusts, and is a well-adjusted member of the Synarche.
Eventually, I realized that I was wasting my time, and if I wanted to hide from humanity in a bottle, I was better off making it a titanium one with a warp drive and a couple of carefully selected companions.
Halmey does salvage: finding ships lost in white space and retrieving them. One of her partners is Connla, a pilot originally from a somewhat atavistic world called Spartacus. The other is their salvage tug.
The boat didn't have a name. He wasn't deemed significant enough to need a name by the authorities and registries that govern such things. He had a registration number 657-2929-04, Human/Terra and he had a class, salvage tug, but he didn't have a name. Officially. We called him Singer. If Singer had an opinion on the issue, he'd never registered it but he never complained. Singer was the shipmind as well as the ship or at least, he inhabited the ship's virtual spaces the same way we inhabited the physical ones but my partner Connla and I didn't own him. You can't own a sentience in civilized space.
As Ancestral Night opens, the three of them are investigating a tip of a white space anomoly well off the beaten path. They thought it might be a lost ship that failed a transition. What they find instead is a dead Ativahika and a mysterious ship equipped with artificial gravity. The Ativahikas are a presumed sentient race of living ships that are on the most alien outskirts of the Synarche confederation. They don't communicate, at least so far as Halmey is aware. She also wasn't aware they died, but this one is thoroughly dead, next to an apparently abandoned ship of unknown origin with a piece of technology beyond the capabilities of the Synarche. The three salvagers get very little time to absorb this scene before they are attacked by pirates. I have always liked Bear's science fiction better than her fantasy, and this is no exception. This was great stuff. Halmey is a talkative, opinionated infodumper, which is a great first-person protagonist to have in a fictional universe this rich with delightful corners. There are some Big Dumb Object vibes (one of my favorite parts of salvage stories), solid character work, a mysterious past that has some satisfying heft once it's revealed, and a whole lot more moral philosophy than I was expecting from the setup. All of it is woven together with experienced skill, unsurprising given Bear's long and prolific career. And it's full of delightful world-building bits: Halmey's afthands (a surgical adaptation for zero gravity work) and grumpiness at the sheer amount of gravity she has to deal with over the course of this book, the Culture-style ship names, and a faster-than-light travel system that of course won't pass physics muster but provides a satisfying quantity of hooky bits for plot to attach to. The backbone of this book is an ancient artifact mystery crossed with a murder investigation. Who killed the Ativahika? Where did the gravity generator come from? Those are good questions with interesting answers. But the heart of the book is a philosophical conflict: What are the boundaries between identity and society? How much power should society have to reshape who we are? If you deny parts of yourself to fit in with society, is this necessarily a form of oppression? I wrote a couple of paragraphs of elaboration, and then deleted them; on further thought, I don't want to give any more details about what Bear is doing in this book. I will only say that I was not expecting this level of thoughtfulness about a notoriously complex and tricky philosophical topic in a full-throated adventure science fiction novel. I think some people may find the ending strange and disappointing. I loved it, and weeks after finishing this book I'm still thinking about it. Ancestral Night has some pacing problems. There is a long stretch in the middle of the book that felt repetitive and strained, where Bear holds the reader at a high level of alert and dread for long enough that I found it enervating. There are also a few political cheap shots where Bear picks the weakest form of an opposing argument instead of the strongest. (Some of the cheap shots are rather satisfying, though.) The dramatic arc of the book is... odd, in a way that I think was entirely intentional given how well it works with the thematic message, but which is also unsettling. You may not get the catharsis that you're expecting. But all of this serves a purpose, and I thought that purpose was interesting. Ancestral Night is one of those books that I liked more a week after I finished it than I did when I finished it.
Epiphanies are wonderful. I m really grateful that our brains do so much processing outside the line of sight of our consciousnesses. Can you imagine how downright boring thinking would be if you had to go through all that stuff line by line?
Also, for once, I think Bear hit on exactly the right level of description rather than leaving me trying to piece together clues and hope I understood the plot. It helps that Halmey loves to explain things, so there are a lot of miniature infodumps, but I found them interesting and a satisfying throwback to an earlier style of science fiction that focused more on world-building than on interpersonal drama. There is drama, but most of it is internal, and I thought the balance was about right. This is solid, well-crafted work and a good addition to the genre. I am looking forward to the rest of the series. Followed by Machine, which shifts to a different protagonist. Rating: 8 out of 10

25 October 2025

Mike Gabriel: Debian Lomiri Tablets - We are hiring!

We at Fre i e Software GmbH now have a confirmed budget for working on Debian based tablets with the special goal to use them for educational purposes (i.e. in schools). Those Debian Edu tablets shall be powered by the Lomiri Operating Environment (that same operating environment that is powering Ubuntu Touch). That said, we are hiring developers (full time, part time) [*] [**]: Global tasks will be: The budget will cover work for the +/- next 1.5-2 yrs. Development achievements shall culminate in the release of Debian 14. If you are interested in joining our team, please get in touch with me via known communication channels. light+love,
Mike (aka sunweaver at debian.org) [fsgmbh] https://freiesoftware.gmbh
[*] We can employ applicants who are located in Germany, Austria or Poland (for other regions within the EU, please ask).
[**] Alternatively, if you are self-employed, we are happy to onboard you as a freelancer.

Sam Hartman: My First Successful AI Coding Experience

Yesterday, I had my first successful AI coding experience. I ve used AI coding tools before and come away disappointed. The results were underwhelming: low-quality code, inconsistent abstraction levels, and subtle bugs that take longer to fix than it would take to write the whole thing from scratch. Those problems haven t vanished. The code quality this time was still disappointing. As I asked the AI to refined its work, it would randomly drop important constraints or refactor things in unhelpful ways. And yet, this experience was different and genuinely valuable for two reasons. The first benefit was the obvious one: the AI helped me get over the blank-page problem. It produced a workable skeleton for the project imperfect, but enough to start building on. The second benefit was more surprising. I was working on a problem in odds-ratio preference optimization specifically, finding a way to combine similar examples in datasets for AI training. I wanted an ideal algorithm, one that extracted every ounce of value from the data. The AI misunderstood my description. Its first attempt was laughably simple it just concatenated two text strings. Thanks, but I can call strcat or the Python equivalent without help. However, the second attempt was different. It was still not what I had asked for but as I thought about it, I realized it was good enough. The AI had created a simpler algorithm that would probably solve my problem in practice. In trying too hard to make the algorithm perfect, I d overlooked that the simpler approach might be the right one. The AI, by misunderstanding, helped me see that. This experience reminded me of something that happened years ago when I was mentoring a new developer. They came to me asking how to solve a difficult problem. Rather than telling them it was impossible, I explained what would be required: a complex authorization framework, intricate system interactions, and a series of political and organizational hurdles that would make deployment nearly impossible. A few months later, they returned and said they d found a solution. I was astonished until I looked more closely. What they d built wasn t the full, organization-wide system I had envisioned. Instead, they d reframed the problem. By narrowing the scope reducing the need for global trust and deep integration they d built a local solution that worked well enough within their project. They succeeded precisely because they didn t see all the constraints I did. Their inexperience freed them from assumptions that had trapped me. That s exactly what happened with the AI. It didn t know which boundaries not to cross. In its simplicity, it found a path forward that I had overlooked. My conclusion isn t that AI coding is suddenly great. It s that working with someone or something that thinks differently can open new paths forward. Whether it s an AI, a peer, or a less experienced engineer, that collaboration can bring fresh perspectives that challenge your assumptions and reveal simpler, more practical ways to solve problems.

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21 October 2025

Emmanuel Kasper: How configuration is passed from the BinderHub helm chart to a running BinderHub

Context: At $WORK I am doing a lot of datascience work around Jupyter Notebooks and their ecosystem. Right now I am setting BinderHub, which is a service to start a Jupyter Notebook from a git repo in your browser. For setting up BinderHub I am using the BinderHub helm chart, and I was wondering how configuration changes are propagated from the BinderHub helm chart to the process running in a Kubernetes Pod. After going through this I can say I am not right now a great fan of Helm, as it looks to me like an unnecessary, overengineered abstraction layer on top of Kubernetes manifests. Or maybe it is just that I don t want to learn the golang templating synthax. I am looking forward to testing Kustomize as an alternative, but I havn t had the chance yet. Starting from the list of config parameters available: Although many parameters are mentioned in the installer document, you have to go to the developer doc at https://binderhub.readthedocs.io/en/latest/reference/ref-index.html to get a whole overview. In my case I want to set the hostname parameter for the Gitlab Repoprovider. This is the relevelant snippet in the developer doc:
hostname c.GitLabRepoProvider.hostname = Unicode('gitlab.com')
    The host of the GitLab instance
The string c.GitLabRepoProvider.hostname here means, that the value of the hostname parameter will be loaded at the path config.GitLabRepoProvider inside a configuration file. Using the yaml synthax this means the configuration file should contain a snippet like:
config:
  GitlabRepoProvider
    hostname: my-domain.com
Digging through Kubernetes constructs: Helm values files When installing BinderHub using the provided helm chart, we can either put the configuration snippet in the config.yaml or secret.yaml helm values files. In my case I have put the snippet in config.yaml, since the hostname is not a secret thing, I can verify with yq that it correctly set:
$ yq --raw-output '.config.GitLabRepoProvider.hostname' config.yaml
my-domain.com
How do we make sure this parameter is properly applied to our running binder processes ? As said previouly this parameter is passed as a value file to helm ( value or -f option) in the command:
$ helm upgrade \                                                                                  
    binderhub \                                                                                     
    jupyterhub/binderhub \                                                                          
    --install \                                                                                     
    --version=$(RELEASE) \                                                                          
    --create-namespace \                                                                            
    --namespace=binderhub \                                                                         
    --values secret.yaml \                                                                                
    --values config.yaml \                                                                                
    --debug 
According to the helm documentation in https://helm.sh/docs/helm/helm_install/ the values file are concatenated to form a single object, and priority will be given to the last (right-most) file specified. For example, if both myvalues.yaml and override.yaml contained a key called Test , the value set in override.yaml would take precedence:
$ helm install --values myvalues.yaml --values override.yaml  myredis ./redis
Digging through Kubernetes constructs: Secrets and Volumes When helm upgrade is run the helm values of type config are stashed in a Kubernetes secret binder-secret: https://github.com/jupyterhub/binderhub/blob/main/helm-chart/binderhub/templates/secret.yaml#L12
stringData:
   - /*
    Stash away relevant Helm template values for
    the BinderHub Python application to read from
    in binderhub_config.py.
  */ 
  values.yaml:  
     - pick .Values "config" "imageBuilderType" "cors" "dind" "pink" "extraConfig"   toYaml   nindent 4  
We can verify that our hostname is passed to our Secret:
$ kubectl get secret binder-secret -o yaml   yq --raw-output '.data."values.yaml"'    base64 --decode
...
  GitLabRepoProvider:
    hostname: my-domain.com
...
Finally a configuration file inside the Binder pod is populated from the Secret, using the Kubernetes Volume construct. Looking at the Pod, we do see a volume called config, created from the binder-secret Secret:
$ kubectl get pod -l component=binder -o yaml   grep --context 4 binder-secret
    volumes:
    - name: config
      secret:
        defaultMode: 420
        secretName: binder-secret
That volume is mounted inside the pod at /etc/binderhub/config:
      volumeMounts:
      - mountPath: /etc/binderhub/config/
        name: config
        readOnly: true
Runtime verification Looking inside our pod we see our hostname value available in a file underneath the mount point:
oc exec binder-74d9c7db95-qtp8r -- grep hostname /etc/binderhub/config/values.yaml
    hostname: my-domain.com

Russ Allbery: Review: Space Trucker Jess

Review: Space Trucker Jess, by Matthew Kressel
Publisher: Fairwood Press
Copyright: July 2025
ISBN: 1-958880-27-2
Format: Kindle
Pages: 472
Space Trucker Jess is a stand-alone far-future space fantasy novel. Jess is a sixteen-year-old mechanic working grey-market jobs on Chadeisson Station with a couple of younger kids. She's there because her charming and utterly unreliable father got caught running a crypto scam and is sitting in detention. This was only the latest in a long series of scams, con jobs, and misadventures she's been dragged through since her mother disappeared without a word. Jess is cynical, world-weary, and infuriated by her own sputtering loyalty to her good-for-nothing dad. What Jess wants most in the universe is to own a CCM 6454 Spark Megahauler, the absolute best cargo ship in the universe according to Jess. She should know; she's worked on nearly every type of ship in existence. With her own ship, she could make a living hauling cargo, repairing her own ship, and going anywhere she wants, free of her father and his endless schemes. (A romantic relationship with her friend Leurie would be a nice bonus.) Then her father is taken off the station on a ship leaving the galactic plane, no one will tell her why, and all the records of the ship appear to have been erased. Jess thinks her father is an asshole, but that doesn't mean she can sit idly by when he disappears. That's how she ends up getting in serious trouble with station security due to some risky in-person sleuthing, followed by an expensive flight off the station with a dodgy guy and a kid in a stolen spaceship. The setup for this book was so great. Kressel felt the need to make up a futuristic slang for Jess and her friends to speak, which rarely works as well as the author expects and does not work here, but apart from that I was hooked. Jess is sarcastic, blustery, and a bit of a con artist herself, but with the idealistic sincerity of someone who knows that her life is been kind of broken and understands the value of friends. She's profoundly cynical in the heartbreakingly defensive way of a sixteen-year-old with a rough life. I have a soft spot in my heart for working-class science fiction (there isn't nearly enough of it), and there are few things I enjoy more than reading about the kind of protagonist who has Opinions about starship models and a dislike of shoddy work. I think this is the only book I've bought solely on the basis of one of the Big Idea blog posts John Scalzi hosts. I really wish this book had stuck with the setup instead of morphing into a weird drug-enabled mystical space fantasy, to which Jess's family is bizarrely central. SPOILERS below because I can't figure out how to rant about what annoyed me without them. Search for the next occurrence of spoilers to skip past them. There are three places where this book lost me. The first was when Jess, after agreeing to help another kid find his father, ends up on a world obsessed with a religious cult involving using hallucinatory drugs to commune with alien gods. Jess immediately flags this as unbelievable bullshit and I was enjoying her well-founded cynicism until Kressel pulls the rug out from under both Jess and the reader by establishing that this new-age claptrap is essentially true. Kressel does try to put a bit of a science fiction gloss on it, but sadly I think that effort was unsuccessful. Sometimes absurdly powerful advanced aliens with near-telepathic powers are part of the fun of a good space opera, but I want the author to make an effort to connect the aliens to plausibility or, failing that, at least avoid sounding indistinguishable from psychic self-help grifters or religious fantasy about spiritual warfare. Stargate SG-1 and Babylon 5 failed on the first part but at least held the second line. Kressel gets depressingly close to Seth territory, although at least Jess is allowed to retain some cynicism about motives. The second, related problem is that Jess ends up being a sort of Chosen One, which I found intensely annoying. This may be a fault of reader expectations more than authorial skill, but one of the things I like to see in working-class science fiction is for the protagonist to not be absurdly central to the future of the galaxy, or to at least force themselves into that position through their own ethics and hard work. This book turns into a sort of quest story with epic fantasy stakes, which I thought was much less interesting than the story the start of the book promised and which made Jess a less interesting character. Finally, this is one of those books where Jess's family troubles and the plot she stumbles across turn into the same plot. Space Trucker Jess is far from alone in having that plot structure, and that's the problem. I'm not universally opposed to this story shape, but Jess felt like the wrong character for it. She starts the story with a lot of self-awareness about how messed up her family dynamics were, and I was rooting for her to find some space to construct her own identity separate from her family. To have her family turn out to be central not only to this story but to the entire galaxy felt like it undermined that human core of the story, although I admit it's a good analogy to the type of drama escalation that dysfunctional families throw at anyone attempting to separate from them. Spoilers end here. I rather enjoyed the first third of this book, despite being a bit annoyed at the constructed slang, and then started rolling my eyes and muttering things about the story going off the rails. Jess is a compelling enough character (and I'm stubborn enough) that I did finish the book, so I can say that I liked the very end. Kressel does finally arrive at the sort of story that I wanted to read all along. Unfortunately, I didn't enjoy the path he took to get there. I think much of my problem was that I wanted Jess to be a more defiant character earlier in the novel, and I wanted her family problems to influence her character growth but not be central to her story. Both of these may be matters of opinion and an artifact of coming into the book with the wrong assumptions. If you are interested in a flawed and backsliding effort to untangle one's identity from a dysfunctional family and don't mind some barely-SF space mysticism and chosen one vibes, it's possible this book will click with you. It's not one that I can recommend, though. I still want the book that I hoped I was getting from that Big Idea piece. Rating: 4 out of 10

20 October 2025

Dirk Eddelbuettel: RcppArmadillo 15.2.0-0 on GitHub: New Upstream, Simpler OpenMP

armadillo image Armadillo is a powerful and expressive C++ template library for linear algebra and scientific computing. It aims towards a good balance between speed and ease of use, has a syntax deliberately close to Matlab, and is useful for algorithm development directly in C++, or quick conversion of research code into production environments. RcppArmadillo integrates this library with the R environment and language and is widely used by (currently) 1270 other packages on CRAN, downloaded 42 million times (per the partial logs from the cloud mirrors of CRAN), and the CSDA paper (preprint / vignette) by Conrad and myself has been cited 650 times according to Google Scholar. This versions updates to the 15.2.0 upstream release made today. It brings a few changes over Armadillo 15.0 (see below for more). It follows the most recent RcppArmadillo 15.0.2-2 release and the Armadillo 15 upstream transition with its dual focus on moving on from C++11 and deprecation of a number of API access points. As we had a few releases last month to manage the transition, we will sit this upgrade out and not upload to CRAN in order to normalize our update cadence towards the desired about six in six months (that the CRAN Policy asks for). One can of course install as usual directly from the GitHub repository as well as from r-universe which also offers binaries for all CRAN platforms. The transition to Armadillo 15 appears to be going slowly but steadily. We had well over 300 packages with either a need to relax the C++11 setting and/or update away from now-deprecated API access points. That number has been cut in half thanks to a lot of work from a lot of package maintainers which is really appreciated! Of course, a lot remains to be done. Issues #489 and #491 contain the over sixty PRs and patches I prepared for all packages with at least one reverse dependency. Most (but not all) have aided in CRAN updates, some packages are still outstanding in terms of updates. As before meta-issue #475 regroups all the resources for the transition. If you, dear reader, have a package that is affected and I could be of assistance please do reach out. The other change we made is to greatly simplify the detection and setup of OpenMP. As before, we rely on configure to attempt compilation of a minimal OpenMP-using program in order to pass the success or failure onto Armadillo as a can-or-cannot use OpenMP. In the year 2025 one of the leading consumer brands still cannot ship an OS where this works out of the box, so we try to aide there. For all others systems, R actually covers this pretty well and has a reliable configuration variable that we rely upon. Just as we recommend for downstream users of the package. This setup should be robust, but is a change so by all means if you knowingly rely on OpenMP please test and report back. The detailed changes since the last CRAN release follow.

Changes in RcppArmadillo version 15.2.0-0 (2025-10-20) (GitHub Only)
  • Upgraded to Armadillo release 15.2.0 (Medium Roast Deluxe)
    • Added rande() for generating matrices with elements from exponential distributions
    • shift() has been deprecated in favour of circshift(), for consistency with Matlab/Octave
    • Reworked detection of aliasing, leading to more efficient compiled code
  • OpenMP detection in configure has been simplified

More detailed information is on the RcppArmadillo page. Questions, comments etc should go to the rcpp-devel mailing list off the Rcpp R-Forge page.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. If you like this or other open-source work I do, you can sponsor me at GitHub.

19 October 2025

Otto Kek l inen: Could the XZ backdoor have been detected with better Git and Debian packaging practices?

Featured image of post Could the XZ backdoor have been detected with better Git and Debian packaging practices?The discovery of a backdoor in XZ Utils in the spring of 2024 shocked the open source community, raising critical questions about software supply chain security. This post explores whether better Debian packaging practices could have detected this threat, offering a guide to auditing packages and suggesting future improvements. The XZ backdoor in versions 5.6.0/5.6.1 made its way briefly into many major Linux distributions such as Debian and Fedora, but luckily didn t reach that many actual users, as the backdoored releases were quickly removed thanks to the heroic diligence of Andres Freund. We are all extremely lucky that he detected a half a second performance regression in SSH, cared enough to trace it down, discovered malicious code in the XZ library loaded by SSH, and reported promtly to various security teams for quick coordinated actions. This episode makes software engineers pondering the following questions: As a Debian Developer, I decided to audit the xz package in Debian, share my methodology and findings in this post, and also suggest some improvements on how the software supply-chain security could be tightened in Debian specifically. Note that the scope here is only to inspect how Debian imports software from its upstreams, and how they are distributed to Debian s users. This excludes the whole story of how to assess if an upstream project is following software development security best practices. This post doesn t discuss how to operate an individual computer running Debian to ensure it remains untampered as there are plenty of guides on that already.

Downloading Debian and upstream source packages Let s start by working backwards from what the Debian package repositories offer for download. As auditing binaries is extremely complicated, we skip that, and assume the Debian build hosts are trustworthy and reliably building binaries from the source packages, and the focus should be on auditing the source code packages. As with everything in Debian, there are multiple tools and ways to do the same thing, but in this post only one (and hopefully the best) way to do something is presented for brevity. The first step is to download the latest version and some past versions of the package from the Debian archive, which is easiest done with debsnap. The following command will download all Debian source packages of xz-utils from Debian release 5.2.4-1 onwards:
$ debsnap --verbose --first 5.2.4-1 xz-utils
Getting json https://snapshot.debian.org/mr/package/xz-utils/
...
Getting dsc file xz-utils_5.2.4-1.dsc: https://snapshot.debian.org/file/a98271e4291bed8df795ce04d9dc8e4ce959462d
Getting file xz-utils_5.2.4.orig.tar.xz.asc: https://snapshot.debian.org/file/59ccbfb2405abe510999afef4b374cad30c09275
Getting file xz-utils_5.2.4-1.debian.tar.xz: https://snapshot.debian.org/file/667c14fd9409ca54c397b07d2d70140d6297393f
source-xz-utils/xz-utils_5.2.4-1.dsc:
Good signature found
validating xz-utils_5.2.4.orig.tar.xz
validating xz-utils_5.2.4.orig.tar.xz.asc
validating xz-utils_5.2.4-1.debian.tar.xz
All files validated successfully.
Once debsnap completes there will be a subfolder source-<package name> with the following types of files:
  • *.orig.tar.xz: source code from upstream
  • *.orig.tar.xz.asc: detached signature (if upstream signs their releases)
  • *.debian.tar.xz: Debian packaging source, i.e. the debian/ subdirectory contents
  • *.dsc: Debian source control file, including signature by Debian Developer/Maintainer
Example:
$ ls -1 source-xz-utils/
...
xz-utils_5.6.4.orig.tar.xz
xz-utils_5.6.4.orig.tar.xz.asc
xz-utils_5.6.4-1.debian.tar.xz
xz-utils_5.6.4-1.dsc
xz-utils_5.8.0.orig.tar.xz
xz-utils_5.8.0.orig.tar.xz.asc
xz-utils_5.8.0-1.debian.tar.xz
xz-utils_5.8.0-1.dsc
xz-utils_5.8.1.orig.tar.xz
xz-utils_5.8.1.orig.tar.xz.asc
xz-utils_5.8.1-1.1.debian.tar.xz
xz-utils_5.8.1-1.1.dsc
xz-utils_5.8.1-1.debian.tar.xz
xz-utils_5.8.1-1.dsc
xz-utils_5.8.1-2.debian.tar.xz
xz-utils_5.8.1-2.dsc

Verifying authenticity of upstream and Debian sources using OpenPGP signatures As seen in the output of debsnap, it already automatically verifies that the downloaded files match the OpenPGP signatures. To have full clarity on what files were authenticated with what keys, we should verify the Debian packagers signature with:
$ gpg --verify --auto-key-retrieve --keyserver hkps://keyring.debian.org xz-utils_5.8.1-2.dsc
gpg: Signature made Fri Oct 3 22:04:44 2025 UTC
gpg: using RSA key 57892E705233051337F6FDD105641F175712FA5B
gpg: requesting key 05641F175712FA5B from hkps://keyring.debian.org
gpg: key 7B96E8162A8CF5D1: public key "Sebastian Andrzej Siewior" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: Good signature from "Sebastian Andrzej Siewior" [unknown]
gpg: aka "Sebastian Andrzej Siewior <bigeasy@linutronix.de>" [unknown]
gpg: aka "Sebastian Andrzej Siewior <sebastian@breakpoint.cc>" [unknown]
gpg: WARNING: This key is not certified with a trusted signature!
gpg: There is no indication that the signature belongs to the owner.
Primary key fingerprint: 6425 4695 FFF0 AA44 66CC 19E6 7B96 E816 2A8C F5D1
Subkey fingerprint: 5789 2E70 5233 0513 37F6 FDD1 0564 1F17 5712 FA5B
The upstream tarball signature (if available) can be verified with:
$ gpg --verify --auto-key-retrieve xz-utils_5.8.1.orig.tar.xz.asc
gpg: assuming signed data in 'xz-utils_5.8.1.orig.tar.xz'
gpg: Signature made Thu Apr 3 11:38:23 2025 UTC
gpg: using RSA key 3690C240CE51B4670D30AD1C38EE757D69184620
gpg: key 38EE757D69184620: public key "Lasse Collin <lasse.collin@tukaani.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: Good signature from "Lasse Collin <lasse.collin@tukaani.org>" [unknown]
gpg: WARNING: This key is not certified with a trusted signature!
gpg: There is no indication that the signature belongs to the owner.
Primary key fingerprint: 3690 C240 CE51 B467 0D30 AD1C 38EE 757D 6918 4620
Note that this only proves that there is a key that created a valid signature for this content. The authenticity of the keys themselves need to be validated separately before trusting they in fact are the keys of these people. That can be done by checking e.g. the upstream website for what key fingerprints they published, or the Debian keyring for Debian Developers and Maintainers, or by relying on the OpenPGP web-of-trust .

Verifying authenticity of upstream sources by comparing checksums In case the upstream in question does not publish release signatures, the second best way to verify the authenticity of the sources used in Debian is to download the sources directly from upstream and compare that the sha256 checksums match. This should be done using the debian/watch file inside the Debian packaging, which defines where the upstream source is downloaded from. Continuing on the example situation above, we can unpack the latest Debian sources, enter and then run uscan to download:
$ tar xvf xz-utils_5.8.1-2.debian.tar.xz
...
debian/rules
debian/source/format
debian/source.lintian-overrides
debian/symbols
debian/tests/control
debian/tests/testsuite
debian/upstream/signing-key.asc
debian/watch
...
$ uscan --download-current-version --destdir /tmp
Newest version of xz-utils on remote site is 5.8.1, specified download version is 5.8.1
gpgv: Signature made Thu Apr 3 11:38:23 2025 UTC
gpgv: using RSA key 3690C240CE51B4670D30AD1C38EE757D69184620
gpgv: Good signature from "Lasse Collin <lasse.collin@tukaani.org>"
Successfully symlinked /tmp/xz-5.8.1.tar.xz to /tmp/xz-utils_5.8.1.orig.tar.xz.
The original files downloaded from upstream are now in /tmp along with the files renamed to follow Debian conventions. Using everything downloaded so far the sha256 checksums can be compared across the files and also to what the .dsc file advertised:
$ ls -1 /tmp/
xz-5.8.1.tar.xz
xz-5.8.1.tar.xz.sig
xz-utils_5.8.1.orig.tar.xz
xz-utils_5.8.1.orig.tar.xz.asc
$ sha256sum xz-utils_5.8.1.orig.tar.xz /tmp/xz-5.8.1.tar.xz
0b54f79df85912504de0b14aec7971e3f964491af1812d83447005807513cd9e xz-utils_5.8.1.orig.tar.xz
0b54f79df85912504de0b14aec7971e3f964491af1812d83447005807513cd9e /tmp/xz-5.8.1.tar.xz
$ grep -A 3 Sha256 xz-utils_5.8.1-2.dsc
Checksums-Sha256:
0b54f79df85912504de0b14aec7971e3f964491af1812d83447005807513cd9e 1461872 xz-utils_5.8.1.orig.tar.xz
4138f4ceca1aa7fd2085fb15a23f6d495d27bca6d3c49c429a8520ea622c27ae 833 xz-utils_5.8.1.orig.tar.xz.asc
3ed458da17e4023ec45b2c398480ed4fe6a7bfc1d108675ec837b5ca9a4b5ccb 24648 xz-utils_5.8.1-2.debian.tar.xz
In the example above the checksum 0b54f79df85... is the same across the files, so it is a match.

Repackaged upstream sources can t be verified as easily Note that uscan may in rare cases repackage some upstream sources, for example to exclude files that don t adhere to Debian s copyright and licensing requirements. Those files and paths would be listed under the Files-Excluded section in the debian/copyright file. There are also other situations where the file that represents the upstream sources in Debian isn t bit-by-bit the same as what upstream published. If checksums don t match, an experienced Debian Developer should review all package settings (e.g. debian/source/options) to see if there was a valid and intentional reason for divergence.

Reviewing changes between two source packages using diffoscope Diffoscope is an incredibly capable and handy tool to compare arbitrary files. For example, to view a report in HTML format of the differences between two XZ releases, run:
diffoscope --html-dir xz-utils-5.6.4_vs_5.8.0 xz-utils_5.6.4.orig.tar.xz xz-utils_5.8.0.orig.tar.xz
browse xz-utils-5.6.4_vs_5.8.0/index.html
Inspecting diffoscope output of differences between two XZ Utils releases If the changes are extensive, and you want to use a LLM to help spot potential security issues, generate the report of both the upstream and Debian packaging differences in Markdown with:
diffoscope --markdown diffoscope-debian.md xz-utils_5.6.4-1.debian.tar.xz xz-utils_5.8.1-2.debian.tar.xz
diffoscope --markdown diffoscope.md xz-utils_5.6.4.orig.tar.xz xz-utils_5.8.0.orig.tar.xz
The Markdown files created above can then be passed to your favorite LLM, along with a prompt such as:
Based on the attached diffoscope output for a new Debian package version compared with the previous one, list all suspicious changes that might have introduced a backdoor, followed by other potential security issues. If there are none, list a short summary of changes as the conclusion.

Reviewing Debian source packages in version control As of today only 93% of all Debian source packages are tracked in git on Debian s GitLab instance at salsa.debian.org. Some key packages such as Coreutils and Bash are not using version control at all, as their maintainers apparently don t see value in using git for Debian packaging, and the Debian Policy does not require it. Thus, the only reliable and consistent way to audit changes in Debian packages is to compare the full versions from the archive as shown above. However, for packages that are hosted on Salsa, one can view the git history to gain additional insight into what exactly changed, when and why. For packages that are using version control, their location can be found in the Git-Vcs header in the debian/control file. For xz-utils the location is salsa.debian.org/debian/xz-utils. Note that the Debian policy does not state anything about how Salsa should be used, or what git repository layout or development practices to follow. In practice most packages follow the DEP-14 proposal, and use git-buildpackage as the tool for managing changes and pushing and pulling them between upstream and salsa.debian.org. To get the XZ Utils source, run:
$ gbp clone https://salsa.debian.org/debian/xz-utils.git
gbp:info: Cloning from 'https://salsa.debian.org/debian/xz-utils.git'
At the time of writing this post the git history shows:
$ git log --graph --oneline
* bb787585 (HEAD -> debian/unstable, origin/debian/unstable, origin/HEAD) Prepare 5.8.1-2
* 4b769547 d: Remove the symlinks from -dev package.
* a39f3428 Correct the nocheck build profile
* 1b806b8d Import Debian changes 5.8.1-1.1
* b1cad34b Prepare 5.8.1-1
* a8646015 Import 5.8.1
* 2808ec2d Update upstream source from tag 'upstream/5.8.1'
 \
  * fa1e8796 (origin/upstream/v5.8, upstream/v5.8) New upstream version 5.8.1
  * a522a226 Bump version and soname for 5.8.1
  * 1c462c2a Add NEWS for 5.8.1
  * 513cabcf Tests: Call lzma_code() in smaller chunks in fuzz_common.h
  * 48440e24 Tests: Add a fuzzing target for the multithreaded .xz decoder
  * 0c80045a liblzma: mt dec: Fix lack of parallelization in single-shot decoding
  * 81880488 liblzma: mt dec: Don't modify thr->in_size in the worker thread
  * d5a2ffe4 liblzma: mt dec: Don't free the input buffer too early (CVE-2025-31115)
  * c0c83596 liblzma: mt dec: Simplify by removing the THR_STOP state
  * 831b55b9 liblzma: mt dec: Fix a comment
  * b9d168ee liblzma: Add assertions to lzma_bufcpy()
  * c8e0a489 DOS: Update Makefile to fix the build
  * 307c02ed sysdefs.h: Avoid <stdalign.h> even with C11 compilers
  * 7ce38b31 Update THANKS
  * 688e51bd Translations: Update the Croatian translation
*   a6b54dde Prepare 5.8.0-1.
*   77d9470f Add 5.8 symbols.
*   9268eb66 Import 5.8.0
*   6f85ef4f Update upstream source from tag 'upstream/5.8.0'
 \ \
  *   afba662b New upstream version 5.8.0
   /
  * 173fb5c6 doc/SHA256SUMS: Add 5.8.0
  * db9258e8 Bump version and soname for 5.8.0
  * bfb752a3 Add NEWS for 5.8.0
  * 6ccbb904 Translations: Run "make -C po update-po"
  * 891a5f05 Translations: Run po4a/update-po
  * 4f52e738 Translations: Partially fix overtranslation in Serbian man pages
  * ff5d9447 liblzma: Count the extra bytes in LZMA/LZMA2 decoder memory usage
  * 943b012d liblzma: Use SSE2 intrinsics instead of memcpy() in dict_repeat()
This shows both the changes on the debian/unstable branch as well as the intermediate upstream import branch, and the actual real upstream development branch. See my Debian source packages in git explainer for details of what these branches are used for. To only view changes on the Debian branch, run git log --graph --oneline --first-parent or git log --graph --oneline -- debian. The Debian branch should only have changes inside the debian/ subdirectory, which is easy to check with:
$ git diff --stat upstream/v5.8
debian/README.source   16 +++
debian/autogen.sh   32 +++++
debian/changelog   949 ++++++++++++++++++++++++++
...
debian/upstream/signing-key.asc   52 +++++++++
debian/watch   4 +
debian/xz-utils.README.Debian   47 ++++++++
debian/xz-utils.docs   6 +
debian/xz-utils.install   28 +++++
debian/xz-utils.postinst   19 +++
debian/xz-utils.prerm   10 ++
debian/xzdec.docs   6 +
debian/xzdec.install   4 +
33 files changed, 2014 insertions(+)
All the files outside the debian/ directory originate from upstream, and for example running git blame on them should show only upstream commits:
$ git blame CMakeLists.txt
22af94128 (Lasse Collin 2024-02-12 17:09:10 +0200 1) # SPDX-License-Identifier: 0BSD
22af94128 (Lasse Collin 2024-02-12 17:09:10 +0200 2)
7e3493d40 (Lasse Collin 2020-02-24 23:38:16 +0200 3) ###############
7e3493d40 (Lasse Collin 2020-02-24 23:38:16 +0200 4) #
426bdc709 (Lasse Collin 2024-02-17 21:45:07 +0200 5) # CMake support for building XZ Utils
If the upstream in question signs commits or tags, they can be verified with e.g.:
$ git verify-tag v5.6.2
gpg: Signature made Wed 29 May 2024 09:39:42 AM PDT
gpg: using RSA key 3690C240CE51B4670D30AD1C38EE757D69184620
gpg: issuer "lasse.collin@tukaani.org"
gpg: Good signature from "Lasse Collin <lasse.collin@tukaani.org>" [expired]
gpg: Note: This key has expired!
The main benefit of reviewing changes in git is the ability to see detailed information about each individual change, instead of just staring at a massive list of changes without any explanations. In this example, to view all the upstream commits since the previous import to Debian, one would view the commit range from afba662b New upstream version 5.8.0 to fa1e8796 New upstream version 5.8.1 with git log --reverse -p afba662b...fa1e8796. However, a far superior way to review changes would be to browse this range using a visual git history viewer, such as gitk. Either way, looking at one code change at a time and reading the git commit message makes the review much easier. Browsing git history in gitk --all

Comparing Debian source packages to git contents As stated in the beginning of the previous section, and worth repeating, there is no guarantee that the contents in the Debian packaging git repository matches what was actually uploaded to Debian. While the tag2upload project in Debian is getting more and more popular, Debian is still far from having any system to enforce that the git repository would be in sync with the Debian archive contents. To detect such differences we can run diff across the Debian source packages downloaded with debsnap earlier (path source-xz-utils/xz-utils_5.8.1-2.debian) and the git repository cloned in the previous section (path xz-utils):
diff
$ diff -u source-xz-utils/xz-utils_5.8.1-2.debian/ xz-utils/debian/
diff -u source-xz-utils/xz-utils_5.8.1-2.debian/changelog xz-utils/debian/changelog
--- debsnap/source-xz-utils/xz-utils_5.8.1-2.debian/changelog 2025-10-03 09:32:16.000000000 -0700
+++ xz-utils/debian/changelog 2025-10-12 12:18:04.623054758 -0700
@@ -5,7 +5,7 @@
 * Remove the symlinks from -dev, pointing to the lib package.
 (Closes: #1109354)

- -- Sebastian Andrzej Siewior <sebastian@breakpoint.cc> Fri, 03 Oct 2025 18:32:16 +0200
+ -- Sebastian Andrzej Siewior <sebastian@breakpoint.cc> Fri, 03 Oct 2025 18:36:59 +0200
In the case above diff revealed that the timestamp in the changelog in the version uploaded to Debian is different from what was committed to git. This is not malicious, just a mistake by the maintainer who probably didn t run gbp tag immediately after upload, but instead some dch command and ended up with having a different timestamps in the git compared to what was actually uploaded to Debian.

Creating syntetic Debian packaging git repositories If no Debian packaging git repository exists, or if it is lagging behind what was uploaded to Debian s archive, one can use git-buildpackage s import-dscs feature to create synthetic git commits based on the files downloaded by debsnap, ensuring the git contents fully matches what was uploaded to the archive. To import a single version there is gbp import-dsc (no s at the end), of which an example invocation would be:
$ gbp import-dsc --verbose ../source-xz-utils/xz-utils_5.8.1-2.dsc
Version '5.8.1-2' imported under '/home/otto/debian/xz-utils-2025-09-29'
Example commit history from a repository with commits added with gbp import-dsc:
$ git log --graph --oneline
* 86aed07b (HEAD -> debian/unstable, tag: debian/5.8.1-2, origin/debian/unstable) Import Debian changes 5.8.1-2
* f111d93b (tag: debian/5.8.1-1.1) Import Debian changes 5.8.1-1.1
* 1106e19b (tag: debian/5.8.1-1) Import Debian changes 5.8.1-1
 \
  * 08edbe38 (tag: upstream/5.8.1, origin/upstream/v5.8, upstream/v5.8) Import Upstream version 5.8.1
   \
    * a522a226 (tag: v5.8.1) Bump version and soname for 5.8.1
    * 1c462c2a Add NEWS for 5.8.1
    * 513cabcf Tests: Call lzma_code() in smaller chunks in fuzz_common.h
An online example repository with only a few missing uploads added using gbp import-dsc can be viewed at salsa.debian.org/otto/xz-utils-2025-09-29/-/network/debian%2Funstable An example repository that was fully crafted using gbp import-dscs can be viewed at salsa.debian.org/otto/xz-utils-gbp-import-dscs-debsnap-generated/-/network/debian%2Flatest. There exists also dgit, which in a similar way creates a synthetic git history to allow viewing the Debian archive contents via git tools. However, its focus is on producing new package versions, so fetching a package with dgit that has not had the history recorded in dgit earlier will only show the latest versions:
$ dgit clone xz-utils
canonical suite name for unstable is sid
starting new git history
last upload to archive: NO git hash
downloading http://ftp.debian.org/debian//pool/main/x/xz-utils/xz-utils_5.8.1.orig.tar.xz...
downloading http://ftp.debian.org/debian//pool/main/x/xz-utils/xz-utils_5.8.1.orig.tar.xz.asc...
downloading http://ftp.debian.org/debian//pool/main/x/xz-utils/xz-utils_5.8.1-2.debian.tar.xz...
dpkg-source: info: extracting xz-utils in unpacked
dpkg-source: info: unpacking xz-utils_5.8.1.orig.tar.xz
dpkg-source: info: unpacking xz-utils_5.8.1-2.debian.tar.xz
synthesised git commit from .dsc 5.8.1-2
HEAD is now at f9bcaf7 xz-utils (5.8.1-2) unstable; urgency=medium
dgit ok: ready for work in xz-utils
$ dgit/sid   git log --graph --oneline
* f9bcaf7 xz-utils (5.8.1-2) unstable; urgency=medium 9 days ago (HEAD -> dgit/sid, dgit/dgit/sid)
 \
  * 11d3a62 Import xz-utils_5.8.1-2.debian.tar.xz 9 days ago
* 15dcd95 Import xz-utils_5.8.1.orig.tar.xz 6 months ago
Unlike git-buildpackage managed git repositories, the dgit managed repositories cannot incorporate the upstream git history and are thus less useful for auditing the full software supply-chain in git.

Comparing upstream source packages to git contents Equally important to the note in the beginning of the previous section, one must also keep in mind that the upstream release source packages, often called release tarballs, are not guaranteed to have the exact same contents as the upstream git repository. Projects might strip out test data or extra development files from their release tarballs to avoid shipping unnecessary files to users, or projects might add documentation files or versioning information into the tarball that isn t stored in git. While a small minority, there are also upstreams that don t use git at all, so the plain files in a release tarball is still the lowest common denominator for all open source software projects, and exporting and importing source code needs to interface with it. In the case of XZ, the release tarball has additional version info and also a sizeable amount of pregenerated compiler configuration files. Detecting and comparing differences between git contents and tarballs can of course be done manually by running diff across an unpacked tarball and a checked out git repository. If using git-buildpackage, the difference between the git contents and tarball contents can be made visible directly in the import commit. In this XZ example, consider this git history:
* b1cad34b Prepare 5.8.1-1
* a8646015 Import 5.8.1
* 2808ec2d Update upstream source from tag 'upstream/5.8.1'
 \
  * fa1e8796 (debian/upstream/v5.8, upstream/v5.8) New upstream version 5.8.1
  * a522a226 (tag: v5.8.1) Bump version and soname for 5.8.1
  * 1c462c2a Add NEWS for 5.8.1
The commit a522a226 was the upstream release commit, which upstream also tagged v5.8.1. The merge commit 2808ec2d applied the new upstream import branch contents on the Debian branch. Between these is the special commit fa1e8796 New upstream version 5.8.1 tagged upstream/v5.8. This commit and tag exists only in the Debian packaging repository, and they show what is the contents imported into Debian. This is generated automatically by git-buildpackage when running git import-orig --uscan for Debian packages with the correct settings in debian/gbp.conf. By viewing this commit one can see exactly how the upstream release tarball differs from the upstream git contents (if at all). In the case of XZ, the difference is substantial, and shown below in full as it is very interesting:
$ git show --stat fa1e8796
commit fa1e8796dabd91a0f667b9e90f9841825225413a
(debian/upstream/v5.8, upstream/v5.8)
Author: Sebastian Andrzej Siewior <sebastian@breakpoint.cc>
Date: Thu Apr 3 22:58:39 2025 +0200
New upstream version 5.8.1
.codespellrc   30 -
.gitattributes   8 -
.github/workflows/ci.yml   163 -
.github/workflows/freebsd.yml   32 -
.github/workflows/netbsd.yml   32 -
.github/workflows/openbsd.yml   35 -
.github/workflows/solaris.yml   32 -
.github/workflows/windows-ci.yml   124 -
.gitignore   113 -
ABOUT-NLS   1 +
ChangeLog   17392 +++++++++++++++++++++
Makefile.in   1097 +++++++
aclocal.m4   1353 ++++++++
build-aux/ci_build.bash   286 --
build-aux/compile   351 ++
build-aux/config.guess   1815 ++++++++++
build-aux/config.rpath   751 +++++
build-aux/config.sub   2354 +++++++++++++
build-aux/depcomp   792 +++++
build-aux/install-sh   541 +++
build-aux/ltmain.sh   11524 ++++++++++++++++++++++
build-aux/missing   236 ++
build-aux/test-driver   160 +
config.h.in   634 ++++
configure   26434 ++++++++++++++++++++++
debug/Makefile.in   756 +++++
doc/SHA256SUMS   236 --
doc/man/txt/lzmainfo.txt   36 +
doc/man/txt/xz.txt   1708 ++++++++++
doc/man/txt/xzdec.txt   76 +
doc/man/txt/xzdiff.txt   39 +
doc/man/txt/xzgrep.txt   70 +
doc/man/txt/xzless.txt   36 +
doc/man/txt/xzmore.txt   31 +
lib/Makefile.in   623 ++++
m4/.gitignore   40 -
m4/build-to-host.m4   274 ++
m4/gettext.m4   392 +++
m4/host-cpu-c-abi.m4   529 +++
m4/iconv.m4   324 ++
m4/intlmacosx.m4   71 +
m4/lib-ld.m4   170 +
m4/lib-link.m4   815 +++++
m4/lib-prefix.m4   334 ++
m4/libtool.m4   8488 +++++++++++++++++++++
m4/ltoptions.m4   467 +++
m4/ltsugar.m4   124 +
m4/ltversion.m4   24 +
m4/lt~obsolete.m4   99 +
m4/nls.m4   33 +
m4/po.m4   456 +++
m4/progtest.m4   92 +
po/.gitignore   31 -
po/Makefile.in.in   517 +++
po/Rules-quot   66 +
po/boldquot.sed   21 +
po/ca.gmo   Bin 0 -> 15587 bytes
po/cs.gmo   Bin 0 -> 7983 bytes
po/da.gmo   Bin 0 -> 9040 bytes
po/de.gmo   Bin 0 -> 29882 bytes
po/en@boldquot.header   35 +
po/en@quot.header   32 +
po/eo.gmo   Bin 0 -> 15060 bytes
po/es.gmo   Bin 0 -> 29228 bytes
po/fi.gmo   Bin 0 -> 28225 bytes
po/fr.gmo   Bin 0 -> 10232 bytes
To be able to easily inspect exactly what changed in the release tarball compared to git release tag contents, the best tool for the job is Meld, invoked via git difftool --dir-diff fa1e8796^..fa1e8796. Meld invoked by git difftool --dir-diff afba662b..fa1e8796 to show differences between git release tag and release tarball contents To compare changes across the new and old upstream tarball, one would need to compare commits afba662b New upstream version 5.8.0 and fa1e8796 New upstream version 5.8.1 by running git difftool --dir-diff afba662b..fa1e8796. Meld invoked by git difftool --dir-diff afba662b..fa1e8796 to show differences between to upstream release tarball contents With all the above tips you can now go and try to audit your own favorite package in Debian and see if it is identical with upstream, and if not, how it differs.

Should the XZ backdoor have been detected using these tools? The famous XZ Utils backdoor (CVE-2024-3094) consisted of two parts: the actual backdoor inside two binary blobs masqueraded as a test files (tests/files/bad-3-corrupt_lzma2.xz, tests/files/good-large_compressed.lzma), and a small modification in the build scripts (m4/build-to-host.m4) to extract the backdoor and plant it into the built binary. The build script was not tracked in version control, but generated with GNU Autotools at release time and only shipped as additional files in the release tarball. The entire reason for me to write this post was to ponder if a diligent engineer using git-buildpackage best practices could have reasonably spotted this while importing the new upstream release into Debian. The short answer is no . The malicious actor here clearly anticipated all the typical ways anyone might inspect both git commits, and release tarball contents, and masqueraded the changes very well and over a long timespan. First of all, XZ has for legitimate reasons for several carefully crafted .xz files as test data to help catch regressions in the decompression code path. The test files are shipped in the release so users can run the test suite and validate that the binary is built correctly and xz works properly. Debian famously runs massive amounts of testing in its CI and autopkgtest system across tens of thousands of packages to uphold high quality despite frequent upgrades of the build toolchain and while supporting more CPU architectures than any other distro. Test data is useful and should stay. When git-buildpackage is used correctly, the upstream commits are visible in the Debian packaging for easy review, but the commit cf44e4b that introduced the test files does not deviate enough from regular sloppy coding practices to really stand out. It is unfortunately very common for git commit to lack a message body explaining why the change was done, and to not be properly atomic with test code and test data together in the same commit, and for commits to be pushed directly to mainline without using code reviews (the commit was not part of any PR in this case). Only another upstream developer could have spotted that this change is not on par to what the project expects, and that the test code was never added, only test data, and thus that this commit was not just a sloppy one but potentially malicious. Secondly, the fact that a new Autotools file appeared (m4/build-to-host.m4) in the XZ Utils 5.6.0 is not suspicious. This is perfectly normal for Autotools. In fact, starting from XZ Utils version 5.8.1 it is now shipping a m4/build-to-host.m4 file that it actually uses now. Spotting that there is anything fishy is practically impossible by simply reading the code, as Autotools files are full custom m4 syntax interwoven with shell script, and there are plenty of backticks ( ) that spawn subshells and evals that execute variable contents further, which is just normal for Autotools. Russ Cox s XZ post explains how exactly the Autotools code fetched the actual backdoor from the test files and injected it into the build. Inspecting the m4/build-to-host.m4 changes in Meld launched via git difftool There is only one tiny thing that maybe a very experienced Autotools user could potentially have noticed: the serial 30 in the version header is way too high. In theory one could also have noticed this Autotools file deviates from what other packages in Debian ship with the same filename, such as e.g. the serial 3, serial 5a or 5b versions. That would however require and an insane amount extra checking work, and is not something we should plan to start doing. A much simpler solution would be to simply strongly recommend all open source projects to stop using Autotools to eventually get rid of it entirely.

Not detectable with reasonable effort While planting backdoors is evil, it is hard not to feel some respect to the level of skill and dedication of the people behind this. I ve been involved in a bunch of security breach investigations during my IT career, and never have I seen anything this well executed. If it hadn t slowed down SSH by ~500 milliseconds and been discovered due to that, it would most likely have stayed undetected for months or years. Hiding backdoors in closed source software is relatively trivial, but hiding backdoors in plain sight in a popular open source project requires some unusual amount of expertise and creativity as shown above.

Is the software supply-chain in Debian easy to audit? While maintaining a Debian package source using git-buildpackage can make the package history a lot easier to inspect, most packages have incomplete configurations in their debian/gbp.conf, and thus their package development histories are not always correctly constructed or uniform and easy to compare. The Debian Policy does not mandate git usage at all, and there are many important packages that are not using git at all. Additionally the Debian Policy also allows for non-maintainers to upload new versions to Debian without committing anything in git even for packages where the original maintainer wanted to use git. Uploads that bypass git unfortunately happen surpisingly often. Because of the situation, I am afraid that we could have multiple similar backdoors lurking that simply haven t been detected yet. More audits, that hopefully also get published openly, would be welcome! More people auditing the contents of the Debian archives would probably also help surface what tools and policies Debian might be missing to make the work easier, and thus help improve the security of Debian s users, and improve trust in Debian.

Is Debian currently missing some software that could help detect similar things? To my knowledge there is currently no system in place as part of Debian s QA or security infrastructure to verify that the upstream source packages in Debian are actually from upstream. I ve come across a lot of packages where the debian/watch or other configs are incorrect and even cases where maintainers have manually created upstream tarballs as it was easier than configuring automation to work. It is obvious that for those packages the source tarball now in Debian is not at all the same as upstream. I am not aware of any malicious cases though (if I was, I would report them of course). I am also aware of packages in the Debian repository that are misconfigured to be of type 1.0 (native) packages, mixing the upstream files and debian/ contents and having patches applied, while they actually should be configured as 3.0 (quilt), and not hide what is the true upstream sources. Debian should extend the QA tools to scan for such things. If I find a sponsor, I might build it myself as my next major contribution to Debian. In addition to better tooling for finding mismatches in the source code, Debian could also have better tooling for tracking in built binaries what their source files were, but solutions like Fraunhofer-AISEC s supply-graph or Sony s ESSTRA are not practical yet. Julien Malka s post about NixOS discusses the role of reproducible builds, which may help in some cases across all distros.

Or, is Debian missing some policies or practices to mitigate this? Perhaps more importantly than more security scanning, the Debian Developer community should switch the general mindset from anyone is free to do anything to valuing having more shared workflows. The ability to audit anything is severely hampered by the fact that there are so many ways to do the same thing, and distinguishing what is a normal deviation from a malicious deviation is too hard, as the normal can basically be almost anything. Also, as there is no documented and recommended default workflow, both those who are old and new to Debian packaging might never learn any one optimal workflow, and end up doing many steps in the packaging process in a way that kind of works, but is actually wrong or unnecessary, causing process deviations that look malicious, but turn out to just be a result of not fully understanding what would have been the right way to do something. In the long run, once individual developers workflows are more aligned, doing code reviews will become a lot easier and smoother as the excess noise of workflow differences diminishes and reviews will feel much more productive to all participants. Debian fostering a culture of code reviews would allow us to slowly move from the current practice of mainly solo packaging work towards true collaboration forming around those code reviews. I have been promoting increased use of Merge Requests in Debian already for some time, for example by proposing DEP-18: Encourage Continuous Integration and Merge Request based Collaboration for Debian packages. If you are involved in Debian development, please give a thumbs up in dep-team/deps!21 if you want me to continue promoting it.

Can we trust open source software? Yes and I would argue that we can only trust open source software. There is no way to audit closed source software, and anyone using e.g. Windows or MacOS just have to trust the vendor s word when they say they have no intentional or accidental backdoors in their software. Or, when the news gets out that the systems of a closed source vendor was compromised, like Crowdstrike some weeks ago, we can t audit anything, and time after time we simply need to take their word when they say they have properly cleaned up their code base. In theory, a vendor could give some kind of contractual or financial guarantee to its customer that there are no preventable security issues, but in practice that never happens. I am not aware of a single case of e.g. Microsoft or Oracle would have paid damages to their customers after a security flaw was found in their software. In theory you could also pay a vendor more to have them focus more effort in security, but since there is no way to verify what they did, or to get compensation when they didn t, any increased fees are likely just pocketed as increased profit. Open source is clearly better overall. You can, if you are an individual with the time and skills, audit every step in the supply-chain, or you could as an organization make investments in open source security improvements and actually verify what changes were made and how security improved. If your organisation is using Debian (or derivatives, such as Ubuntu) and you are interested in sponsoring my work to improve Debian, please reach out.

17 October 2025

Dirk Eddelbuettel: ML quacks: Combining duckdb and mlpack

A side project I have been working on a little since last winter and which explores extending duckdb with mlpack is now public at the duckdb-mlpack repo. duckdb is an excellent small (as in runs as a self-contained binary ) database engine with both a focus on analytical payloads (OLAP rather than OLTP) and an impressive number of already bolted-on extensions (for example for cloud data access) delivered as a single-build C++ executable (or of course as a library used from other front-ends). mlpack is an excellent C++ library containing many/most machine learning algorithms, also built in a self-contained manner (or library) making it possible to build compact yet powerful binaries, or to embed (as opposed to other ML framework accessed from powerful but not lightweight run-times such as Python or R). The compact build aspect as well as the common build tools (C++, cmake) make these two a natural candidate for combining them. Moreover, duckdb is a champion of data access, management and control and the complementary machine learning insights and predictions offered by mlpack are fully complementary and hence fit this rather well. duckdb also has a very robust and active extension system. To use it, one starts from a template repository and its use this template button, runs a script and can then start experimenting. I have now grouped my initial start and test functions into a separate repository duckdb-example-extension to keep the duckdb-mlpack one focused on the extend to mlpack aspect. duckdb-mlpack is right an MVP , i.e. a minimally viable product (or demo). It just runs the adaboost classifier but does so on any dataset fitting the rectangular setup with columns of features (real valued) and a final column (integer valued) of labels. I had hope to use two select queries for both features and then labels but it turns a table function (returning a table of data from a query) can only run one select *. So the basic demo, also on the repo README is now to run the following script (where the SELECT * FROM mlpack_adaboost((SELECT * FROM D)); is the key invocation of the added functionality):
#!/bin/bash

cat <<EOF   build/release/duckdb
SET autoinstall_known_extensions=1;
SET autoload_known_extensions=1; # for httpfs

CREATE TEMP TABLE Xd AS SELECT * FROM read_csv("https://mlpack.org/datasets/iris.csv");
CREATE TEMP TABLE X AS SELECT row_number() OVER () AS id, * FROM Xd;
CREATE TEMP TABLE Yd AS SELECT * FROM read_csv("https://mlpack.org/datasets/iris_labels.csv");
CREATE TEMP TABLE Y AS SELECT row_number() OVER () AS id, CAST(column0 AS double) as label FROM Yd;
CREATE TEMP TABLE D AS SELECT * FROM X INNER JOIN Y ON X.id = Y.id;
ALTER TABLE D DROP id;
ALTER TABLE D DROP id_1;
CREATE TEMP TABLE A AS SELECT * FROM mlpack_adaboost((SELECT * FROM D));

SELECT COUNT(*) as n, predicted FROM A GROUP BY predicted;
EOF
to produce the following tabulation / group by:
./sampleCallRemote.sh
Misclassified: 1
 
    n     predicted  
  int64     int32    
 
     50           0  
     49           1  
     51           2  
 
$
(Note that this requires the httpfs extension. So when you build from a freshly created extension repository you may be ahead of the most recent release of duckdb by a few commits. It is easy to check out the most recent release tag (or maybe the one you are running for your local duckdb binary) to take advantage of the extensions you likely already have for that version. So here, and in the middle of October 2025, I picked v1.4.1 as I run duckdb version 1.4.1 on my box.) There are many other neat duckdb extensions. The core ones are regrouped here while a list of community extensions is here and here. For this (still more minimal) extension, I added a few TODO items to the README.md: Please reach out if you are interested in working on any of this.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. If you like this or other open-source work I do, you can now sponsor me at GitHub.

David Bremner: Hibernate on the pocket reform 13/n

Context

Some progress upstream Recently Sebastian Reichel at Collabora [1] has made a few related commits, apparently inspired in part by my kvetching on this blog.

Disconnecting and reconnecting PCI busses At some point I noticed error message about the nvme device on resume. I then learned how to disconnect and reconnect PCI buses in Linux. I ended up with something like the following. At least the PCI management seems to work. I can manually disconnect all the PCI busses and rescan to connect them again on a running system. It presumably helps that I am not using the nvme device in this system.
set -x
echo platform >  /sys/power/pm_test
echo reboot > /sys/power/disk
rmmod mt76x2u
sleep 2
echo 1   tee /sys/bus/pci/devices/0003:30:00.0/remove
sleep 2
echo 1   tee /sys/bus/pci/devices/0004:41:00.0/remove
sleep 2
echo 1   tee /sys/bus/pci/devices/0004:40:00.0/remove
sleep 2
echo LSPCI:
lspci -t
sleep 2
echo disk >  /sys/power/state
sleep 2
echo 1   tee /sys/bus/pci/rescan
sleep 2
modprobe mt76x2u

Minimal changes to upstream With the ongoing work at collabora I decided to try a minimal patch stack to get the pocket reform to boot. I added the following 3 commits (available from [3]).
09868a4f2eb (HEAD -> reform-patches) copy pocket-reform dts from reform-debian-packages
152e2ae8a193 pocket/panel: sleep fix v3
18f65da9681c add-multi-display-panel-driver
It does indeed boot and seems stable.
$ uname -a
Linux anthia 6.18.0-rc1+ #19 SMP Thu Oct 16 11:32:04 ADT 2025 aarch64 GNU/Linux
Running the hibernation script above I get no output from the lspci, but seemingly issues with PCI coming back from hibernate:
[  424.645109] PM: hibernation: Allocated 361823 pages for snapshot
[  424.647216] PM: hibernation: Allocated 1447292 kbytes in 3.23 seconds (448.07 MB/s)
[  424.649321] Freezing remaining freezable tasks
[  424.654767] Freezing remaining freezable tasks completed (elapsed 0.003 seconds)
[  424.661070] rk_gmac-dwmac fe1b0000.ethernet end0: Link is Down
[  424.740716] rockchip-dw-pcie a40c00000.pcie: Failed to receive PME_TO_Ack
[  424.742041] PM: hibernation: hibernation debug: Waiting for 5 second(s).
[  430.074757] pci 0004:40:00.0: [1d87:3588] type 01 class 0x060400 PCIe Root Port
F F & Zn [  watchdog: CPU4: Watchdog detected hard LOCKUP on cpu 5
[  456.039004] Modules linked in: xt_CHECKSUM xt_tcpudp nft_chain_nat xt_MASQUERADE nf_nat nf_conntrack nf_defrag_ipv6 nf_defrag_ipv4 nft_compat x_tables bridge stp llc nf_tables aes_neon_bs aes_neon_blk ccm dwmac_rk binfmt_misc mt76x2_common mt76x02_usb mt76_usb mt76x02_lib mt76 mac80211 rk805_pwrkey snd_soc_tlv320aic31xx snd_soc_simple_card reform2_lpc(OE) libarc4 rockchip_saradc industrialio_triggered_buffer kfifo_buf industrialio cfg80211 rockchip_thermal rockchip_rng hantro_vpu cdc_acm v4l2_vp9 v4l2_jpeg rockchip_rga rfkill snd_soc_rockchip_i2s_tdm videobuf2_dma_sg v4l2_h264 panthor snd_soc_audio_graph_card drm_gpuvm snd_soc_simple_card_utils drm_exec evdev joydev dm_mod nvme_fabrics efi_pstore configfs nfnetlink autofs4 ext4 crc16 mbcache jbd2 btrfs blake2b_generic xor xor_neon raid6_pq mali_dp snd_soc_meson_axg_toddr snd_soc_meson_axg_fifo snd_soc_meson_codec_glue panfrost drm_shmem_helper gpu_sched ao_cec_g12a meson_vdec(C) videobuf2_dma_contig videobuf2_memops v4l2_mem2mem videobuf2_v4l2 videodev
[  456.039060]  videobuf2_common mc dw_hdmi_i2s_audio meson_drm meson_canvas meson_dw_mipi_dsi meson_dw_hdmi mxsfb mux_mmio panel_edp imx_dcss ti_sn65dsi86 nwl_dsi mux_core pwm_imx27 hid_generic usbhid hid xhci_plat_hcd onboard_usb_dev xhci_hcd nvme nvme_core snd_soc_hdmi_codec snd_soc_core nvme_keyring nvme_auth hkdf snd_pcm_dmaengine snd_pcm snd_timer snd soundcore fan53555 rtc_pcf8523 micrel phy_package stmmac_platform stmmac pcs_xpcs rk808_regulator phylink sdhci_of_dwcmshc mdio_devres dw_mmc_rockchip of_mdio sdhci_pltfm phy_rockchip_usbdp fixed_phy dw_mmc_pltfm fwnode_mdio typec phy_rockchip_naneng_combphy phy_rockchip_samsung_hdptx pwm_rockchip sdhci dwc3 libphy dw_wdt dw_mmc ehci_platform rockchip_dfi mdio_bus cqhci ulpi ohci_platform ehci_hcd udc_core ohci_hcd rockchipdrm phy_rockchip_inno_usb2 usbcore dw_hdmi_qp analogix_dp dw_mipi_dsi cpufreq_dt dw_mipi_dsi2 i2c_rk3x usb_common drm_dp_aux_bus [last unloaded: mt76x2u]
[  456.039111] Sending NMI from CPU 4 to CPUs 5:
[  471.942262] page_pool_release_retry() stalled pool shutdown: id 9, 2 inflight 60 sec
[  532.989611] page_pool_release_retry() stalled pool shutdown: id 9, 2 inflight 121 sec
This does look like some progress, probably thanks to Sebastien. Comparing with the logs in hibernate-pocket-12, the resume process is not bailing out complaining about PHY.

Attempt to reapply PCI reset patches Following the procedure in hibernate-pocket-12, I attempted to re-apply the pci reset patches [2]. In particular I followed the hints output by b4. Unfortunately there are too many conflicts now for me to sensibly resolve.
  1. https://gitlab.collabora.com/hardware-enablement/rockchip-3588/linux.git#rockchip-devel
  2. https://lore.kernel.org/all/20250715-pci-port-reset-v6-0-6f9cce94e7bb@oss.qualcomm.com/#r
  3. https://salsa.debian.org/bremner/collabora-rockchip-3588#reform-patches

14 October 2025

Dirk Eddelbuettel: qlcal 0.0.17 on CRAN: Regular Update

The seventeenth release of the qlcal package arrivied at CRAN today, once again following a QuantLib release as 1.40 came out this morning. qlcal delivers the calendaring parts of QuantLib. It is provided (for the R package) as a set of included files, so the package is self-contained and does not depend on an external QuantLib library (which can be demanding to build). qlcal covers over sixty country / market calendars and can compute holiday lists, its complement (i.e. business day lists) and much more. Examples are in the README at the repository, the package page, and course at the CRAN package page. This releases mainly synchronizes qlcal with the QuantLib release 1.40. Only one country calendar got updated; the diffstat looks larger as the URL part of the copyright got updated throughout. We also updated the URL for the GPL-2 badge: when CRAN checks this, they always hit a timeout as the FSF server possibly keeps track of incoming requests; we now link to version from the R Licenses page to avoid this.

Changes in version 0.0.17 (2025-07-14)
  • Synchronized with QuantLib 1.40 released today
  • Calendar updates for Singapore
  • URL update in README.md

Courtesy of my CRANberries, there is a diffstat report for this release. See the project page and package documentation for more details, and more examples.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. If you like this or other open-source work I do, you can sponsor me at GitHub.

Freexian Collaborators: Debian Contributions: Old Debian Printing software and C23, Work to decommission packages.qa.debian.org, rebootstrap uses *-for-host and more! (by Anupa Ann Joseph)

Debian Contributions: 2025-09 Contributing to Debian is part of Freexian s mission. This article covers the latest achievements of Freexian and their collaborators. All of this is made possible by organizations subscribing to our Long Term Support contracts and consulting services.

Updating old Debian Printing software to meet C23 requirements, by Thorsten Alteholz The work of Thorsten fell under the motto gcc15 . Due to the introduction of gcc15 in Debian, the default language version was changed to C23. This means that for example, function declarations without parameters are no longer allowed. As old software, which was created with ANSI C (or C89) syntax, made use of such function declarations, it was a busy month. One could have used something like -std=c17 as compile flags, but this would have just postponed the tasks. As a result Thorsten uploaded modernized versions of ink, nm2ppa and rlpr for the Debian printing team.

Work done to decommission packages.qa.debian.org, by Rapha l Hertzog Rapha l worked to decommission the old package tracking system (packages.qa.debian.org). After figuring out that it was still receiving emails from the bug tracking system (bugs.debian.org), from multiple debian lists and from some release team tools, he reached out to the respective teams to either drop those emails or adjust them so that they are sent to the current Debian Package Tracker (tracker.debian.org).

rebootstrap uses *-for-host, by Helmut Grohne Architecture cross bootstrapping is an ongoing effort that has shaped Debian in various ways over the years. A longer effort to express toolchain dependencies now bears fruit. When cross compiling, it becomes important to express what architecture one is compiling for in Build-Depends. As these packages have become available in trixie , more and more packages add this extra information and in August, the libtool package gained a gfortran-for-host dependency. It was the first package in the essential build closure to adopt this and required putting the pieces together in rebootstrap that now has to build gcc-defaults early on. There still are hundreds of packages whose dependencies need to be updated though.

Miscellaneous contributions
  • Rapha l dropped the Build Log Scan integration in tracker.debian.org since it was showing stale data for a while as the underlying service has been discontinued.
  • Emilio updated pixman to 0.46.4.
  • Emilio coordinated several transitions, and NMUed guestfs-tools to unblock one.
  • Stefano uploaded Python 3.14rc3 to Debian unstable. It s not yet used by any packages, but it allows testing the level of support in packages to begin.
  • Stefano upgraded almost all of the debian-social infrastructure to Debian trixie .
  • Stefano published the sponsorship brochures for DebConf 26.
  • Stefano attended the Debian Technical Committee meeting.
  • Stefano uploaded routine upstream updates for a handful of Python packages (pycparser, beautifulsoup4, platformdirs, pycparser, python-authlib, python-cffi, python-mitogen, python-resolvelib, python-super-collections, twine).
  • Stefano reviewed and responded to DebConf 25 feedback.
  • Stefano investigated and fixed a request visibility bug in debian-reimbursements (for admin-altered requests).
  • Lucas reviewed a couple of merge requests from external contributors for Go and Ruby packages.
  • Lucas updated some ruby packages to its latest upstream version (thin, passenger, and puma is still WIP).
  • Lucas set up the build environment to run rebuilds of reverse dependencies of ruby using ruby3.4. As an alternative, he is looking for personal repositories provided by Debusine to perform this task more easily. This is the preparation for the transition to ruby3.4 as the default in Debian.
  • Lucas helped on the next round of the Outreachy internship program.
  • Helmut sent patches for 30 cross build failures and responded to cross building support questions on the mailing list.
  • Helmut continued to maintain rebootstrap. As gcc version 15 became the default, test jobs for version 14 had to be dropped. A fair number of patches were applied to packages and could be dropped.
  • Helmut resumed removing RC-buggy packages from unstable and sponsored a termrec upload to avoid its deletion. This work was paused to give packages some time to migrate to forky .
  • Santiago reviewed different merge requests created by different contributors. Those MRs include a new test to build reverse dependencies, created by Aquila Macedo as part of his GSoC internship; restore how lintian was used in experimental, thanks Otto Kek l inen; and the fix by Christian Bayle to support again extra repositories in deb822-style sources, whose support was broken with the move to sbuild+unshare last month.
  • While doing some new upstream release updates, thanks to Debusine s reverse dependencies autopkgtest checks, Santiago discovered that paramiko 4.0 will introduce a regression in libcloud by the drop of support for the obsolete DSA keys. Santiago finally uploaded to unstable both paramiko 4.0, and a regression fix for libcloud.
  • Santiago has taken part in different discussions and meetings for the preparation of DebConf 26. The DebConf 26 local team aims to prepare for the conference with enough time in advance.
  • Carles kept working on the missing-package-relations and reporting missing Recommends. He improved the tooling to detect and report bugs creating 269 bugs and followed up comments. 37 bugs have been resolved, others acknowledged. The missing Recommends are a mixture of packages that are gone from Debian, packages that changed name, typos and also packages that were recommended but are not packaged in Debian.
  • Carles improved the missing-package-relations to report broken Suggests only for packages that used to be in Debian but are removed from it now. No bugs have been created yet for this case but identified 1320 of them.
  • Colin spent much of the month chasing down build/test regressions in various Python packages due to other upgrades, particularly relating to pydantic, python-pytest-asyncio, and rust-pyo3.
  • Colin optimized some code in ubuntu-dev-tools (affecting e.g. pull-debian-source) that made O(n) HTTP requests when it could instead make O(1).
  • Anupa published Micronews as part of Debian Publicity team work.

12 October 2025

Dirk Eddelbuettel: RcppSpdlog 0.0.23 on CRAN: New Upstream

Version 0.0.23 of RcppSpdlog arrived on CRAN today (after a slight delay) and has been uploaded to Debian. RcppSpdlog bundles spdlog, a wonderful header-only C++ logging library with all the bells and whistles you would want that was written by Gabi Melman, and also includes fmt by Victor Zverovich. You can learn more at the nice package documention site. This release updates the code to the version 1.16.0 of spdlog which was released yesterday morning, and includes version 1.12.0 of fmt. We also converted the documentation site to now using mkdocs-material to altdoc (plus local style and production tweaks) rather than directly. I updated the package yesterday morning when spdlog was updated. But the passage was delayed for a day at CRAN as their machines still times out hitting the GPL-2 URL from the README.md badge, leading to a human to manually check the log assert the nothingburgerness of it. This timeout does not happen to me locally using the corresponding URL checker package. I pondered this in a r-package-devel thread and may just have to switch to using the R Project URL for the GPL-2 as this is in fact recurrning. The NEWS entry for this release follows.

Changes in RcppSpdlog version 0.0.23 (2025-10-11)
  • Upgraded to upstream release spdlog 1.16.0 (including fmt 12.0)
  • The mkdocs-material documentation site is now generated via altdoc

Courtesy of my CRANberries, there is also a diffstat report detailing changes. More detailed information is on the RcppSpdlog page, or the package documention site.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. If you like this or other open-source work I do, you can sponsor me at GitHub.

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