Benchmark setup All programs were tested against a Dovecot 1:2.3.13+dfsg1-2 server, running Debian bullseye. The client is a Purism 13v4 laptop with a Samsung SSD 970 EVO 1TB NVMe drive. The server is a custom build with a AMD Ryzen 5 2600 CPU, and a RAID-1 array made of two NVMe drives (Intel SSDPEKNW010T8 and WDC WDS100T2B0C). The mail spool I am testing against has almost 400k messages and takes 13GB of disk space:

$ notmuch count --exclude=false
372758
$ du -sh --exclude xapian Maildir
13G Maildir

The baseline we are comparing against is SMD (syncmaildir) which performs the sync in about 7-8 seconds locally (3.5 seconds for each push/pull command) and about 10-12 seconds remotely. Anything close to that or better is good enough. I do not have recent numbers for a SMD full sync baseline, but the setup documentation mentions 20 minutes for a full sync. That was a few years ago, and the spool has obviously grown since then, so that is not a reliable baseline. A baseline for a full sync might be also set with rsync, which copies files at nearly 40MB/s, or 317Mb/s!

anarcat@angela:tmp(main)$ time rsync -a --info=progress2 --exclude xapian  shell.anarc.at:Maildir/ Maildir/
 12,647,814,731 100%   37.85MB/s    0:05:18 (xfr#394981, to-chk=0/395815)    
72.38user 106.10system 5:19.59elapsed 55%CPU (0avgtext+0avgdata 15988maxresident)k
8816inputs+26305112outputs (0major+50953minor)pagefaults 0swaps

That is 5 minutes to transfer the entire spool. Incremental syncs are obviously pretty fast too:

anarcat@angela:tmp(main)$ time rsync -a --info=progress2 --exclude xapian  shell.anarc.at:Maildir/ Maildir/
              0   0%    0.00kB/s    0:00:00 (xfr#0, to-chk=0/395815)    
1.42user 0.81system 0:03.31elapsed 67%CPU (0avgtext+0avgdata 14100maxresident)k
120inputs+0outputs (3major+12709minor)pagefaults 0swaps

As an extra curiosity, here's the performance with tar, pretty similar with rsync, minus incremental which I cannot be bothered to figure out right now:

anarcat@angela:tmp(main)$ time ssh shell.anarc.at tar --exclude xapian -cf - Maildir/   pv -s 13G   tar xf - 
56.68user 58.86system 5:17.08elapsed 36%CPU (0avgtext+0avgdata 8764maxresident)k
0inputs+0outputs (0major+7266minor)pagefaults 0swaps
12,1GiO 0:05:17 [39,0MiB/s] [===================================================================> ] 92%

Interesting that rsync manages to almost beat a plain tar on file transfer, I'm actually surprised by how well it performs here, considering there are many little files to transfer. (But then again, this maybe is exactly where rsync shines: while tar needs to glue all those little files together, rsync can just directly talk to the other side and tell it to do live changes. Something to look at in another article maybe?) Since both ends are NVMe drives, those should easily saturate a gigabit link. And in fact, a backup of the server mail spool achieves much faster transfer rate on disks:

anarcat@marcos:~$ tar fc - Maildir   pv -s 13G > Maildir.tar
15,0GiO 0:01:57 [ 131MiB/s] [===================================] 115%

That's 131Mibyyte per second, vastly faster than the gigabit link. The client has similar performance:

anarcat@angela:~(main)$ tar fc - Maildir   pv -s 17G > Maildir.tar
16,2GiO 0:02:22 [ 116MiB/s] [==================================] 95%

So those disks should be able to saturate a gigabit link, and they are not the bottleneck on fast links. Which begs the question of what is blocking performance of a similar transfer over the gigabit link, but that's another question altogether, because no sync program ever reaches the above performance anyways. Finally, note that when I migrated to SMD, I wrote a small performance comparison that could be interesting here. It show SMD to be faster than OfflineIMAP, but not as much as we see here. In fact, it looks like OfflineIMAP slowed down significantly since then (May 2018), but this could be due to my larger mail spool as well.

mbsync The isync (AKA mbsync) project is written in C and supports syncing Maildir and IMAP folders, with possibly multiple replicas. I haven't tested this but I suspect it might be possible to sync between two IMAP servers as well. It supports partial mirorrs, message flags, full folder support, and "trash" functionality.

Complex configuration file I started with this .mbsyncrc configuration file:

SyncState *
Sync New ReNew Flags
IMAPAccount anarcat
Host imap.anarc.at
User anarcat
PassCmd "pass imap.anarc.at"
SSLType IMAPS
CertificateFile /etc/ssl/certs/ca-certificates.crt
IMAPStore anarcat-remote
Account anarcat
MaildirStore anarcat-local
# Maildir/top/sub/sub
#SubFolders Verbatim
# Maildir/.top.sub.sub
SubFolders Maildir++
# Maildir/top/.sub/.sub
# SubFolders legacy
# The trailing "/" is important
#Path ~/Maildir-mbsync/
Inbox ~/Maildir-mbsync/
Channel anarcat
# AKA Far, convert when all clients are 1.4+
Master :anarcat-remote:
# AKA Near
Slave :anarcat-local:
# Exclude everything under the internal [Gmail] folder, except the interesting folders
#Patterns * ![Gmail]* "[Gmail]/Sent Mail" "[Gmail]/Starred" "[Gmail]/All Mail"
# Or include everything
Patterns *
# Automatically create missing mailboxes, both locally and on the server
#Create Both
Create slave
# Sync the movement of messages between folders and deletions, add after making sure the sync works
#Expunge Both

Long gone are the days where I would spend a long time reading a manual page to figure out the meaning of every option. If that's your thing, you might like this one. But I'm more of a "EXAMPLES section" kind of person now, and I somehow couldn't find a sample file on the website. I started from the Arch wiki one but it's actually not great because it's made for Gmail (which is not a usual Dovecot server). So a sample config file in the manpage would be a great addition. Thankfully, the Debian packages ships one in /usr/share/doc/isync/examples/mbsyncrc.sample but I only found that after I wrote my configuration. It was still useful and I recommend people take a look if they want to understand the syntax. Also, that syntax is a little overly complicated. For example, Far needs colons, like:

Far :anarcat-remote:

Why? That seems just too complicated. I also found that sections are not clearly identified: IMAPAccount and Channel mark section beginnings, for example, which is not at all obvious until you learn about mbsync's internals. There are also weird ordering issues: the SyncState option needs to be before IMAPAccount, presumably because it's global. Using a more standard format like .INI or TOML could improve that situation.

Stellar performance A transfer of the entire mail spool takes 56 minutes and 6 seconds, which is impressive. It's not quite "line rate": the resulting mail spool was 12GB (which is a problem, see below), which turns out to be about 29Mbit/s and therefore not maxing the gigabit link, and an order of magnitude slower than rsync. The incremental runs are roughly 2 seconds, which is even more impressive, as that's actually faster than rsync:

===> multitime results
1: mbsync -a
            Mean        Std.Dev.    Min         Median      Max
real        2.015       0.052       1.930       2.029       2.105       
user        0.660       0.040       0.592       0.661       0.722       
sys         0.338       0.033       0.268       0.341       0.387    

Those tests were performed with isync 1.3.0-2.2 on Debian bullseye. Tests with a newer isync release originally failed because of a corrupted message that triggered bug 999804 (see below). Running 1.4.3 under valgrind works around the bug, but adds a 50% performance cost, the full sync running in 1h35m. Once the upstream patch is applied, performance with 1.4.3 is fairly similar, considering that the new sync included the register folder with 4000 messages:

120.74user 213.19system 59:47.69elapsed 9%CPU (0avgtext+0avgdata 105420maxresident)k
29128inputs+28284376outputs (0major+45711minor)pagefaults 0swaps

That is ~13GB in ~60 minutes, which gives us 28.3Mbps. Incrementals are also pretty similar to 1.3.x, again considering the double-connect cost:

===> multitime results
1: mbsync -a
            Mean        Std.Dev.    Min         Median      Max
real        2.500       0.087       2.340       2.491       2.629       
user        0.718       0.037       0.679       0.711       0.793       
sys         0.322       0.024       0.284       0.320       0.365

Those tests were all done on a Gigabit link, but what happens on a slower link? My server uplink is slow: 25 Mbps down, 6 Mbps up. There mbsync is worse than the SMD baseline:

===> multitime results
1: mbsync -a
Mean        Std.Dev.    Min         Median      Max
real        31.531      0.724       30.764      31.271      33.100      
user        1.858       0.125       1.721       1.818       2.131       
sys         0.610       0.063       0.506       0.600       0.695       

That's 30 seconds for a sync, which is an order of magnitude slower than SMD.

Great user interface Compared to OfflineIMAP and (ahem) SMD, the mbsync UI is kind of neat:

anarcat@angela:~(main)$ mbsync -a
Notice: Master/Slave are deprecated; use Far/Near instead.
C: 1/2  B: 204/205  F: +0/0 *0/0 #0/0  N: +1/200 *0/0 #0/0

(Note that nice switch away from slavery-related terms too.) The display is minimal, and yet informative. It's not obvious what does mean at first glance, but the manpage is useful at least for clarifying that:

This represents the cumulative progress over channels, boxes, and messages affected on the far and near side, respectively. The message counts represent added messages, messages with updated flags, and trashed messages, respectively. No attempt is made to calculate the totals in advance, so they grow over time as more information is gathered. (Emphasis mine).

In other words:

• C 2/2: channels done/total (2 done out of 2)
• B 204/205: mailboxes done/total (204 out of 205)
• F: changes on the far side
• N: +10/200 *0/0 #0/0: changes on the "near" side:
  • +10/200: 10 out of 200 messages downloaded
  • *0/0: no flag changed
  • #0/0: no message deleted

You get used to it, in a good way. It does not, unfortunately, show up when you run it in systemd, which is a bit annoying as I like to see a summary mail traffic in the logs.

Interoperability issue In my notmuch setup, I have bound key S to "mark spam", which basically assigns the tag spam to the message and removes a bunch of others. Then I have a notmuch-purge script which moves that message to the spam folder, for training purposes. It basically does this:

notmuch search --output=files --format=text0 "$search_spam" \
      xargs -r -0 mv -t "$HOME/Maildir/$ PREFIX junk/cur/"

This method, which worked fine in SMD (and also OfflineIMAP) created this error on sync:

Maildir error: duplicate UID 37578.

And indeed, there are now two messages with that UID in the mailbox:

anarcat@angela:~(main)$ find Maildir/.junk/ -name '*U=37578*'
Maildir/.junk/cur/1637427889.134334_2.angela,U=37578:2,S
Maildir/.junk/cur/1637348602.2492889_221804.angela,U=37578:2,S

This is actually a known limitation or, as mbsync(1) calls it, a "RECOMMENDATION":

When using the more efficient default UID mapping scheme, it is important that the MUA renames files when moving them between Maildir fold ers. Mutt always does that, while mu4e needs to be configured to do it:

(setq mu4e-change-filenames-when-moving t)

So it seems I would need to fix my script. It's unclear how the paths should be renamed, which is unfortunate, because I would need to change my script to adapt to mbsync, but I can't tell how just from reading the above. (A manual fix is actually to rename the file to remove the U= field: mbsync will generate a new one and then sync correctly.) Fortunately, someone else already fixed that issue: afew, a notmuch tagging script (much puns, such hurt), has a move mode that can rename files correctly, specifically designed to deal with mbsync. I had already been told about afew, but it's one more reason to standardize my notmuch hooks on that project, it looks like. Update: I have tried to use afew and found it has significant performance issues. It also has a completely different paradigm to what I am used to: it assumes all incoming mail has a new and lays its own tags on top of that (inbox, sent, etc). It can only move files from one folder at a time (see this bug) which breaks my spam training workflow. In general, I sync my tags into folders (e.g. ham, spam, sent) and message flags (e.g. inbox is F, unread is "not S", etc), and afew is not well suited for this (although there are hacks that try to fix this). I have worked hard to make my tagging scripts idempotent, and it's something afew doesn't currently have. Still, it would be better to have that code in Python than bash, so maybe I should consider my options here.

Stability issues The newer release in Debian bookworm (currently at 1.4.3) has stability issues on full sync. I filed bug 999804 in Debian about this, which lead to a thread on the upstream mailing list. I have found at least three distinct crashes that could be double-free bugs "which might be exploitable in the worst case", not a reassuring prospect. The thing is: mbsync is really fast, but the downside of that is that it's written in C, and with that comes a whole set of security issues. The Debian security tracker has only three CVEs on isync, but the above issues show there could be many more. Reading the source code certainly did not make me very comfortable with trusting it with untrusted data. I considered sandboxing it with systemd (below) but having systemd run as a --user process makes that difficult. I also considered using an apparmor profile but that is not trivial because we need to allow SSH and only some parts of it... Thankfully, upstream has been diligent at addressing the issues I have found. They provided a patch within a few days which did fix the sync issues. Update: upstream actually took the issue very seriously. They not only got CVE-2021-44143 assigned for my bug report, they also audited the code and found several more issues collectively identified as CVE-2021-3657, which actually also affect 1.3 (ie. Debian 11/bullseye/stable). Somehow my corpus doesn't trigger that issue, but it was still considered serious enough to warrant a CVE. So one the one hand: excellent response from upstream; but on the other hand: how many more of those could there be in there?

Automation with systemd The Arch wiki has instructions on how to setup mbsync as a systemd service. It suggests using the --verbose (-V) flag which is a little intense here, as it outputs 1444 lines of messages. I have used the following .service file:

[Unit]
Description=Mailbox synchronization service
ConditionHost=!marcos
Wants=network-online.target
After=network-online.target
Before=notmuch-new.service
[Service]
Type=oneshot
ExecStart=/usr/bin/mbsync -a
Nice=10
IOSchedulingClass=idle
NoNewPrivileges=true
[Install]
WantedBy=default.target

And the following .timer:

[Unit]
Description=Mailbox synchronization timer
ConditionHost=!marcos
[Timer]
OnBootSec=2m
OnUnitActiveSec=5m
Unit=mbsync.service
[Install]
WantedBy=timers.target

Note that we trigger notmuch through systemd, with the Before and also by adding mbsync.service to the notmuch-new.service file:

[Unit]
Description=notmuch new
After=mbsync.service
[Service]
Type=oneshot
Nice=10
ExecStart=/usr/bin/notmuch new
[Install]
WantedBy=mbsync.service

An improvement over polling repeatedly with a .timer would be to wake up only on IMAP notify, but neither imapnotify nor goimapnotify seem to be packaged in Debian. It would also not cover for the "sent folder" use case, where we need to wake up on local changes.

Password-less setup The sample file suggests this should work:

IMAPStore remote
Tunnel "ssh -q host.remote.com /usr/sbin/imapd"

Add BatchMode, restrict to IdentitiesOnly, provide a password-less key just for this, add compression (-C), find the Dovecot imap binary, and you get this:

IMAPAccount anarcat-tunnel
Tunnel "ssh -o BatchMode=yes -o IdentitiesOnly=yes -i ~/.ssh/id_ed25519_mbsync -o HostKeyAlias=shell.anarc.at -C anarcat@imap.anarc.at /usr/lib/dovecot/imap"

And it actually seems to work:

$ mbsync -a
Notice: Master/Slave are deprecated; use Far/Near instead.
C: 0/2  B: 0/1  F: +0/0 *0/0 #0/0  N: +0/0 *0/0 #0/0imap(anarcat): Error: net_connect_unix(/run/dovecot/stats-writer) failed: Permission denied
C: 2/2  B: 205/205  F: +0/0 *0/0 #0/0  N: +1/1 *3/3 #0/0imap(anarcat)<1611280><90uUOuyElmEQlhgAFjQyWQ>: Info: Logged out in=10808 out=15396642 deleted=0 expunged=0 trashed=0 hdr_count=0 hdr_bytes=0 body_count=1 body_bytes=8087

It's a bit noisy, however. dovecot/imap doesn't have a "usage" to speak of, but even the source code doesn't hint at a way to disable that Error message, so that's unfortunate. That socket is owned by root:dovecot so presumably Dovecot runs the imap process as $user:dovecot, which we can't do here. Oh well? Interestingly, the SSH setup is not faster than IMAP. With IMAP:

===> multitime results
1: mbsync -a
            Mean        Std.Dev.    Min         Median      Max
real        2.367       0.065       2.220       2.376       2.458       
user        0.793       0.047       0.731       0.776       0.871       
sys         0.426       0.040       0.364       0.434       0.476

With SSH:

===> multitime results
1: mbsync -a
            Mean        Std.Dev.    Min         Median      Max
real        2.515       0.088       2.274       2.532       2.594       
user        0.753       0.043       0.645       0.766       0.804       
sys         0.328       0.045       0.212       0.340       0.393

Basically: 200ms slower. Tolerable.

Migrating from SMD The above was how I migrated to mbsync on my first workstation. The work on the second one was more streamlined, especially since the corruption on mailboxes was fixed:

1. install isync, with the patch:

   dpkg -i isync_1.4.3-1.1~_amd64.deb
   

2. copy all files over from previous workstation to avoid a full resync (optional):

   rsync -a --info=progress2 angela:Maildir/ Maildir-mbsync/
   

3. rename all files to match new hostname (optional):

   find Maildir-mbsync/ -type f -name '*.angela,*' -print0    rename -0 's/\.angela,/\.curie,/'
   

4. trash the notmuch database (optional):

   rm -rf Maildir-mbsync/.notmuch/xapian/
   

5. disable all smd and notmuch services:

   systemctl --user --now disable smd-pull.service smd-pull.timer smd-push.service smd-push.timer notmuch-new.service notmuch-new.timer
   

6. do one last sync with smd:

   smd-pull --show-tags ; smd-push --show-tags ; notmuch new ; notmuch-sync-flagged -v
   

7. backup notmuch on the client and server:

   notmuch dump   pv > notmuch.dump
   

8. backup the maildir on the client and server:

   cp -al Maildir Maildir-bak
   

9. create the SSH key:

   ssh-keygen -t ed25519 -f .ssh/id_ed25519_mbsync
   cat .ssh/id_ed25519_mbsync.pub
   

10. add to .ssh/authorized_keys on the server, like this: command="/usr/lib/dovecot/imap",restrict ssh-ed25519 AAAAC...
11. move old files aside, if present:

    mv Maildir Maildir-smd
    

12. move new files in place (CRITICAL SECTION BEGINS!):

    mv Maildir-mbsync Maildir
    

13. run a test sync, only pulling changes: mbsync --create-near --remove-none --expunge-none --noop anarcat-register
14. if that works well, try with all mailboxes: mbsync --create-near --remove-none --expunge-none --noop -a
15. if that works well, try again with a full sync: mbsync register mbsync -a
16. reindex and restore the notmuch database, this should take ~25 minutes:

    notmuch new
    pv notmuch.dump   notmuch restore
    

17. enable the systemd services and retire the smd-* services: systemctl --user enable mbsync.timer notmuch-new.service systemctl --user start mbsync.timer rm ~/.config/systemd/user/smd* systemctl daemon-reload

During the migration, notmuch helpfully told me the full list of those lost messages:

[...]
Warning: cannot apply tags to missing message: CAN6gO7_QgCaiDFvpG3AXHi6fW12qaN286+2a7ERQ2CQtzjSEPw@mail.gmail.com
Warning: cannot apply tags to missing message: CAPTU9Wmp0yAmaxO+qo8CegzRQZhCP853TWQ_Ne-YF94MDUZ+Dw@mail.gmail.com
Warning: cannot apply tags to missing message: F5086003-2917-4659-B7D2-66C62FCD4128@gmail.com
[...]
Warning: cannot apply tags to missing message: mailman.2.1316793601.53477.sage-members@mailman.sage.org
Warning: cannot apply tags to missing message: mailman.7.1317646801.26891.outages-discussion@outages.org
Warning: cannot apply tags to missing message: notmuch-sha1-000458df6e48d4857187a000d643ac971deeef47
Warning: cannot apply tags to missing message: notmuch-sha1-0079d8e0c3340e6f88c66f4c49fca758ea71d06d
Warning: cannot apply tags to missing message: notmuch-sha1-0194baa4cfb6d39bc9e4d8c049adaccaa777467d
Warning: cannot apply tags to missing message: notmuch-sha1-02aede494fc3f9e9f060cfd7c044d6d724ad287c
Warning: cannot apply tags to missing message: notmuch-sha1-06606c625d3b3445420e737afd9a245ae66e5562
Warning: cannot apply tags to missing message: notmuch-sha1-0747b020f7551415b9bf5059c58e0a637ba53b13
[...]

As detailed in the crash report, all of those were actually innocuous and could be ignored. Also note that we completely trash the notmuch database because it's actually faster to reindex from scratch than let notmuch slowly figure out that all mails are new and all the old mails are gone. The fresh indexing took:

nov 19 15:08:54 angela notmuch[2521117]: Processed 384679 total files in 23m 41s (270 files/sec.).
nov 19 15:08:54 angela notmuch[2521117]: Added 372610 new messages to the database.

While a reindexing on top of an existing database was going twice as slow, at about 120 files/sec.

Current config file Putting it all together, I ended up with the following configuration file:

SyncState *
Sync All
# IMAP side, AKA "Far"
IMAPAccount anarcat-imap
Host imap.anarc.at
User anarcat
PassCmd "pass imap.anarc.at"
SSLType IMAPS
CertificateFile /etc/ssl/certs/ca-certificates.crt
IMAPAccount anarcat-tunnel
Tunnel "ssh -o BatchMode=yes -o IdentitiesOnly=yes -i ~/.ssh/id_ed25519_mbsync -o HostKeyAlias=shell.anarc.at -C anarcat@imap.anarc.at /usr/lib/dovecot/imap"
IMAPStore anarcat-remote
Account anarcat-tunnel
# Maildir side, AKA "Near"
MaildirStore anarcat-local
# Maildir/top/sub/sub
#SubFolders Verbatim
# Maildir/.top.sub.sub
SubFolders Maildir++
# Maildir/top/.sub/.sub
# SubFolders legacy
# The trailing "/" is important
#Path ~/Maildir-mbsync/
Inbox ~/Maildir/
# what binds Maildir and IMAP
Channel anarcat
Far :anarcat-remote:
Near :anarcat-local:
# Exclude everything under the internal [Gmail] folder, except the interesting folders
#Patterns * ![Gmail]* "[Gmail]/Sent Mail" "[Gmail]/Starred" "[Gmail]/All Mail"
# Or include everything
#Patterns *
Patterns * !register  !.register
# Automatically create missing mailboxes, both locally and on the server
Create Both
#Create Near
# Sync the movement of messages between folders and deletions, add after making sure the sync works
Expunge Both
# Propagate mailbox deletion
Remove both
IMAPAccount anarcat-register-imap
Host imap.anarc.at
User register
PassCmd "pass imap.anarc.at-register"
SSLType IMAPS
CertificateFile /etc/ssl/certs/ca-certificates.crt
IMAPAccount anarcat-register-tunnel
Tunnel "ssh -o BatchMode=yes -o IdentitiesOnly=yes -i ~/.ssh/id_ed25519_mbsync -o HostKeyAlias=shell.anarc.at -C register@imap.anarc.at /usr/lib/dovecot/imap"
IMAPStore anarcat-register-remote
Account anarcat-register-tunnel
MaildirStore anarcat-register-local
SubFolders Maildir++
Inbox ~/Maildir/.register/
Channel anarcat-register
Far :anarcat-register-remote:
Near :anarcat-register-local:
Create Both
Expunge Both
Remove both

Note that it may be out of sync with my live (and private) configuration file, as I do not publish my "dotfiles" repository publicly for security reasons.

OfflineIMAP I've used OfflineIMAP for a long time before switching to SMD. I don't exactly remember why or when I started using it, but I do remember it became painfully slow as I started using notmuch, and would sometimes crash mysteriously. It's been a while, so my memory is hazy on that. It also kind of died in a fire when Python 2 stop being maintained. The main author moved on to a different project, imapfw which could serve as a framework to build IMAP clients, but never seemed to implement all of the OfflineIMAP features and certainly not configuration file compatibility. Thankfully, a new team of volunteers ported OfflineIMAP to Python 3 and we can now test that new version to see if it is an improvement over mbsync.

Crash on full sync The first thing that happened on a full sync is this crash:

Copy message from RemoteAnarcat:junk:
 ERROR: Copying message 30624 [acc: Anarcat]
  decoding with 'X-EUC-TW' codec failed (AttributeError: 'memoryview' object has no attribute 'decode')
Thread 'Copy message from RemoteAnarcat:junk' terminated with exception:
Traceback (most recent call last):
  File "/usr/share/offlineimap3/offlineimap/imaputil.py", line 406, in utf7m_decode
    for c in binary.decode():
AttributeError: 'memoryview' object has no attribute 'decode'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
  File "/usr/share/offlineimap3/offlineimap/threadutil.py", line 146, in run
    Thread.run(self)
  File "/usr/lib/python3.9/threading.py", line 892, in run
    self._target(*self._args, **self._kwargs)
  File "/usr/share/offlineimap3/offlineimap/folder/Base.py", line 802, in copymessageto
    message = self.getmessage(uid)
  File "/usr/share/offlineimap3/offlineimap/folder/IMAP.py", line 342, in getmessage
    data = self._fetch_from_imap(str(uid), self.retrycount)
  File "/usr/share/offlineimap3/offlineimap/folder/IMAP.py", line 908, in _fetch_from_imap
    ndata1 = self.parser['8bit-RFC'].parsebytes(data[0][1])
  File "/usr/lib/python3.9/email/parser.py", line 123, in parsebytes
    return self.parser.parsestr(text, headersonly)
  File "/usr/lib/python3.9/email/parser.py", line 67, in parsestr
    return self.parse(StringIO(text), headersonly=headersonly)
  File "/usr/lib/python3.9/email/parser.py", line 56, in parse
    feedparser.feed(data)
  File "/usr/lib/python3.9/email/feedparser.py", line 176, in feed
    self._call_parse()
  File "/usr/lib/python3.9/email/feedparser.py", line 180, in _call_parse
    self._parse()
  File "/usr/lib/python3.9/email/feedparser.py", line 385, in _parsegen
    for retval in self._parsegen():
  File "/usr/lib/python3.9/email/feedparser.py", line 298, in _parsegen
    for retval in self._parsegen():
  File "/usr/lib/python3.9/email/feedparser.py", line 385, in _parsegen
    for retval in self._parsegen():
  File "/usr/lib/python3.9/email/feedparser.py", line 256, in _parsegen
    if self._cur.get_content_type() == 'message/delivery-status':
  File "/usr/lib/python3.9/email/message.py", line 578, in get_content_type
    value = self.get('content-type', missing)
  File "/usr/lib/python3.9/email/message.py", line 471, in get
    return self.policy.header_fetch_parse(k, v)
  File "/usr/lib/python3.9/email/policy.py", line 163, in header_fetch_parse
    return self.header_factory(name, value)
  File "/usr/lib/python3.9/email/headerregistry.py", line 601, in __call__
    return self[name](name, value)
  File "/usr/lib/python3.9/email/headerregistry.py", line 196, in __new__
    cls.parse(value, kwds)
  File "/usr/lib/python3.9/email/headerregistry.py", line 445, in parse
    kwds['parse_tree'] = parse_tree = cls.value_parser(value)
  File "/usr/lib/python3.9/email/_header_value_parser.py", line 2675, in parse_content_type_header
    ctype.append(parse_mime_parameters(value[1:]))
  File "/usr/lib/python3.9/email/_header_value_parser.py", line 2569, in parse_mime_parameters
    token, value = get_parameter(value)
  File "/usr/lib/python3.9/email/_header_value_parser.py", line 2492, in get_parameter
    token, value = get_value(value)
  File "/usr/lib/python3.9/email/_header_value_parser.py", line 2403, in get_value
    token, value = get_quoted_string(value)
  File "/usr/lib/python3.9/email/_header_value_parser.py", line 1294, in get_quoted_string
    token, value = get_bare_quoted_string(value)
  File "/usr/lib/python3.9/email/_header_value_parser.py", line 1223, in get_bare_quoted_string
    token, value = get_encoded_word(value)
  File "/usr/lib/python3.9/email/_header_value_parser.py", line 1064, in get_encoded_word
    text, charset, lang, defects = _ew.decode('=?' + tok + '?=')
  File "/usr/lib/python3.9/email/_encoded_words.py", line 181, in decode
    string = bstring.decode(charset)
AttributeError: decoding with 'X-EUC-TW' codec failed (AttributeError: 'memoryview' object has no attribute 'decode')
Last 1 debug messages logged for Copy message from RemoteAnarcat:junk prior to exception:
thread: Register new thread 'Copy message from RemoteAnarcat:junk' (account 'Anarcat')
ERROR: Exceptions occurred during the run!
ERROR: Copying message 30624 [acc: Anarcat]
  decoding with 'X-EUC-TW' codec failed (AttributeError: 'memoryview' object has no attribute 'decode')
Traceback:
  File "/usr/share/offlineimap3/offlineimap/folder/Base.py", line 802, in copymessageto
    message = self.getmessage(uid)
  File "/usr/share/offlineimap3/offlineimap/folder/IMAP.py", line 342, in getmessage
    data = self._fetch_from_imap(str(uid), self.retrycount)
  File "/usr/share/offlineimap3/offlineimap/folder/IMAP.py", line 908, in _fetch_from_imap
    ndata1 = self.parser['8bit-RFC'].parsebytes(data[0][1])
  File "/usr/lib/python3.9/email/parser.py", line 123, in parsebytes
    return self.parser.parsestr(text, headersonly)
  File "/usr/lib/python3.9/email/parser.py", line 67, in parsestr
    return self.parse(StringIO(text), headersonly=headersonly)
  File "/usr/lib/python3.9/email/parser.py", line 56, in parse
    feedparser.feed(data)
  File "/usr/lib/python3.9/email/feedparser.py", line 176, in feed
    self._call_parse()
  File "/usr/lib/python3.9/email/feedparser.py", line 180, in _call_parse
    self._parse()
  File "/usr/lib/python3.9/email/feedparser.py", line 385, in _parsegen
    for retval in self._parsegen():
  File "/usr/lib/python3.9/email/feedparser.py", line 298, in _parsegen
    for retval in self._parsegen():
  File "/usr/lib/python3.9/email/feedparser.py", line 385, in _parsegen
    for retval in self._parsegen():
  File "/usr/lib/python3.9/email/feedparser.py", line 256, in _parsegen
    if self._cur.get_content_type() == 'message/delivery-status':
  File "/usr/lib/python3.9/email/message.py", line 578, in get_content_type
    value = self.get('content-type', missing)
  File "/usr/lib/python3.9/email/message.py", line 471, in get
    return self.policy.header_fetch_parse(k, v)
  File "/usr/lib/python3.9/email/policy.py", line 163, in header_fetch_parse
    return self.header_factory(name, value)
  File "/usr/lib/python3.9/email/headerregistry.py", line 601, in __call__
    return self[name](name, value)
  File "/usr/lib/python3.9/email/headerregistry.py", line 196, in __new__
    cls.parse(value, kwds)
  File "/usr/lib/python3.9/email/headerregistry.py", line 445, in parse
    kwds['parse_tree'] = parse_tree = cls.value_parser(value)
  File "/usr/lib/python3.9/email/_header_value_parser.py", line 2675, in parse_content_type_header
    ctype.append(parse_mime_parameters(value[1:]))
  File "/usr/lib/python3.9/email/_header_value_parser.py", line 2569, in parse_mime_parameters
    token, value = get_parameter(value)
  File "/usr/lib/python3.9/email/_header_value_parser.py", line 2492, in get_parameter
    token, value = get_value(value)
  File "/usr/lib/python3.9/email/_header_value_parser.py", line 2403, in get_value
    token, value = get_quoted_string(value)
  File "/usr/lib/python3.9/email/_header_value_parser.py", line 1294, in get_quoted_string
    token, value = get_bare_quoted_string(value)
  File "/usr/lib/python3.9/email/_header_value_parser.py", line 1223, in get_bare_quoted_string
    token, value = get_encoded_word(value)
  File "/usr/lib/python3.9/email/_header_value_parser.py", line 1064, in get_encoded_word
    text, charset, lang, defects = _ew.decode('=?' + tok + '?=')
  File "/usr/lib/python3.9/email/_encoded_words.py", line 181, in decode
    string = bstring.decode(charset)
Folder junk [acc: Anarcat]:
 Copy message UID 30626 (29008/49310) RemoteAnarcat:junk -> LocalAnarcat:junk
Command exited with non-zero status 100
5252.91user 535.86system 3:21:00elapsed 47%CPU (0avgtext+0avgdata 846304maxresident)k
96344inputs+26563792outputs (1189major+2155815minor)pagefaults 0swaps

That only transferred about 8GB of mail, which gives us a transfer rate of 5.3Mbit/s, more than 5 times slower than mbsync. This bug is possibly limited to the bullseye version of offlineimap3 (the lovely 0.0~git20210225.1e7ef9e+dfsg-4), while the current sid version (the equally gorgeous 0.0~git20211018.e64c254+dfsg-1) seems unaffected.

Tolerable performance The new release still crashes, except it does so at the very end, which is an improvement, since the mails do get transferred:

 *** Finished account 'Anarcat' in 511:12
ERROR: Exceptions occurred during the run!
ERROR: Exception parsing message with ID (<20190619152034.BFB8810E07A@marcos.anarc.at>) from imaplib (response type: bytes).
 AttributeError: decoding with 'X-EUC-TW' codec failed (AttributeError: 'memoryview' object has no attribute 'decode')
Traceback:
  File "/usr/share/offlineimap3/offlineimap/folder/Base.py", line 810, in copymessageto
    message = self.getmessage(uid)
  File "/usr/share/offlineimap3/offlineimap/folder/IMAP.py", line 343, in getmessage
    data = self._fetch_from_imap(str(uid), self.retrycount)
  File "/usr/share/offlineimap3/offlineimap/folder/IMAP.py", line 910, in _fetch_from_imap
    raise OfflineImapError(
ERROR: Exception parsing message with ID (<40A270DB.9090609@alternatives.ca>) from imaplib (response type: bytes).
 AttributeError: decoding with 'x-mac-roman' codec failed (AttributeError: 'memoryview' object has no attribute 'decode')
Traceback:
  File "/usr/share/offlineimap3/offlineimap/folder/Base.py", line 810, in copymessageto
    message = self.getmessage(uid)
  File "/usr/share/offlineimap3/offlineimap/folder/IMAP.py", line 343, in getmessage
    data = self._fetch_from_imap(str(uid), self.retrycount)
  File "/usr/share/offlineimap3/offlineimap/folder/IMAP.py", line 910, in _fetch_from_imap
    raise OfflineImapError(
ERROR: IMAP server 'RemoteAnarcat' does not have a message with UID '32686'
Traceback:
  File "/usr/share/offlineimap3/offlineimap/folder/Base.py", line 810, in copymessageto
    message = self.getmessage(uid)
  File "/usr/share/offlineimap3/offlineimap/folder/IMAP.py", line 343, in getmessage
    data = self._fetch_from_imap(str(uid), self.retrycount)
  File "/usr/share/offlineimap3/offlineimap/folder/IMAP.py", line 889, in _fetch_from_imap
    raise OfflineImapError(reason, severity)
Command exited with non-zero status 1
8273.52user 983.80system 8:31:12elapsed 30%CPU (0avgtext+0avgdata 841936maxresident)k
56376inputs+43247608outputs (811major+4972914minor)pagefaults 0swaps
"offlineimap  -o " took 8 hours 31 mins 15 secs

This is 8h31m for transferring 12G, which is around 3.1Mbit/s. That is nine times slower than mbsync, almost an order of magnitude! Now that we have a full sync, we can test incremental synchronization. That is also much slower:

===> multitime results
1: sh -c "offlineimap -o   true"
            Mean        Std.Dev.    Min         Median      Max
real        24.639      0.513       23.946      24.526      25.708      
user        23.912      0.473       23.404      23.795      24.947      
sys         1.743       0.105       1.607       1.729       2.002

That is also an order of magnitude slower than mbsync, and significantly slower than what you'd expect from a sync process. ~30 seconds is long enough to make me impatient and distracted; 3 seconds, less so: I can wait and see the results almost immediately.

Integrity check That said: this is still on a gigabit link. It's technically possible that OfflineIMAP performs better than mbsync over a slow link, but I Haven't tested that theory. The OfflineIMAP mail spool is missing quite a few messages as well:

anarcat@angela:~(main)$ find Maildir-offlineimap -type f -type f -a \! -name '.*'   wc -l 
381463
anarcat@angela:~(main)$ find Maildir -type f -type f -a \! -name '.*'   wc -l 
385247

... although that's probably all either new messages or the register folder, so OfflineIMAP might actually be in a better position there. But digging in more, it seems like the actual per-folder diff is fairly similar to mbsync: a few messages missing here and there. Considering OfflineIMAP's instability and poor performance, I have not looked any deeper in those discrepancies.

Other projects to evaluate Those are all the options I have considered, in alphabetical order

• doveadm-sync: requires dovecot on both ends, can tunnel over SSH, may have performance issues in incremental sync, written in C
• fdm: fetchmail replacement, IMAP/POP3/stdin/Maildir/mbox,NNTP support, SOCKS support (for Tor), complex rules for delivering to specific mailboxes, adding headers, piping to commands, etc. discarded because no (real) support for keeping mail on the server, and written in C
• getmail: fetchmail replacement, IMAP/POP3 support, supports incremental runs, classification rules, Python
• interimap: syncs two IMAP servers, apparently faster than doveadm and offlineimap, but requires running an IMAP server locally, Perl
• isync/mbsync: TLS client certs and SSH tunnels, fast, incremental, IMAP/POP/Maildir support, multiple mailbox, trash and recursion support, and generally has good words from multiple Debian and notmuch people (Arch tutorial), written in C, review above
• mail-sync: notify support, happens over any piped transport (e.g. ssh), diff/patch system, requires binary on both ends, mentions UUCP in the manpage, mentions rsmtp which is a nice name for rsendmail. not evaluated because it seems awfully complex to setup, Haskell
• nncp: treat the local spool as another mail server, not really compatible with my "multiple clients" setup, Golang
• offlineimap3: requires IMAP, used the py2 version in the past, might just still work, first sync painful (IIRC), ways to tunnel over SSH, review above, Python

Most projects were not evaluated due to lack of time.

Conclusion I'm now using mbsync to sync my mail. I'm a little disappointed by the synchronisation times over the slow link, but I guess that's on par for the course if we use IMAP. We are bound by the network speed much more than with custom protocols. I'm also worried about the C implementation and the crashes I have witnessed, but I am encouraged by the fast upstream response. Time will tell if I will stick with that setup. I'm certainly curious about the promises of interimap and mail-sync, but I have ran out of time on this project.

The latest crash On Monday, SMD just started failing with this error:

nov 15 16:12:19 angela systemd[2305]: Starting pull emails with syncmaildir...
nov 15 16:12:22 angela systemd[2305]: smd-pull.service: Succeeded.
nov 15 16:12:22 angela systemd[2305]: Finished pull emails with syncmaildir.
nov 15 16:14:08 angela systemd[2305]: Starting pull emails with syncmaildir...
nov 15 16:14:11 angela systemd[2305]: smd-pull.service: Main process exited, code=exited, status=1/FAILURE
nov 15 16:14:11 angela systemd[2305]: smd-pull.service: Failed with result 'exit-code'.
nov 15 16:14:11 angela systemd[2305]: Failed to start pull emails with syncmaildir.
nov 15 16:16:14 angela systemd[2305]: Starting pull emails with syncmaildir...
nov 15 16:16:17 angela smd-pull[27178]: smd-client: ERROR: Network error.
nov 15 16:16:17 angela smd-pull[27178]: smd-client: ERROR: Unable to get any data from the other endpoint.
nov 15 16:16:17 angela smd-pull[27178]: smd-client: ERROR: This problem may be transient, please retry.
nov 15 16:16:17 angela smd-pull[27178]: smd-client: ERROR: Hint: did you correctly setup the SERVERNAME variable
nov 15 16:16:17 angela smd-pull[27178]: smd-client: ERROR: on your client? Did you add an entry for it in your ssh
nov 15 16:16:17 angela smd-pull[27178]: smd-client: ERROR: configuration file?
nov 15 16:16:17 angela smd-pull[27178]: smd-client: ERROR: Network error
nov 15 16:16:17 angela smd-pull[27188]: register: smd-client@localhost: TAGS: error::context(handshake) probable-cause(network) human-intervention(avoidable) suggested-actions(retry)
nov 15 16:16:17 angela systemd[2305]: smd-pull.service: Main process exited, code=exited, status=1/FAILURE
nov 15 16:16:17 angela systemd[2305]: smd-pull.service: Failed with result 'exit-code'.
nov 15 16:16:17 angela systemd[2305]: Failed to start pull emails with syncmaildir.

What is frustrating is that there's actually no network error here. Running the command by hand I did see a different message, but now I have lost it in my backlog. It had something to do with a filename being too long, and I gave up debugging after a while. This happened suddenly too, which added to the confusion. In a fit of rage I started this blog post and experimenting with alternatives, which led me down a lot of rabbit holes. Reviewing my previous mail crash documentation, it seems most solutions involve talking to an IMAP server, so I figured I would just do that. Wanting to try something new, i gave isync (AKA mbsync) a try. Oh dear, I did not expect how much trouble just talking to my IMAP server would be, which wasn't not isync's fault, for what that's worth. It was the primary tool I used to debug things, and served me well in that regard.

Mailbox corruption The first thing I found out is that certain messages in the IMAP spool were corrupted. mbsync would stop on a FETCH command and Dovecot would give me those errors on the server side.

"wrong W value"

nov 16 15:31:27 marcos dovecot[3621800]: imap(anarcat)<3630489><wAmSzO3QZtfAqAB1>: Error: Mailbox junk: Maildir filename has wrong W value, renamed the file from /home/anarcat/Maildir/.junk/cur/1454623938.M101164P22216.marcos,S=2495,W=2578:2,S to /home/anarcat/Maildir/.junk/cur/1454623938.M101164P22216.marcos,S=2495:2,S
nov 16 15:31:27 marcos dovecot[3621800]: imap(anarcat)<3630489><wAmSzO3QZtfAqAB1>: Error: Mailbox junk: Deleting corrupted cache record uid=1582: UID 1582: Broken virtual size in mailbox junk: read(/home/anarcat/Maildir/.junk/cur/1454623938.M101164P22216.marcos,S=2495,W=2578:2,S): FETCH BODY[] got too little data: 2540 vs 2578

At least this first error was automatically healed by Dovecot (by renaming the file without the W= flag). The problem is that the FETCH command fails and mbsync exits noisily. So you need to constantly restart mbsync with a silly command like:

while ! mbsync -a; do sleep 1; done

"cached message size larger than expected"

nov 16 13:53:08 marcos dovecot[3520770]: imap(anarcat)<3594402><M5JHb+zQ3NLAqAB1>: Error: Mailbox Sent: UID=19288: read(/home/anarcat/Maildir/.Sent/cur/1224790447.M898726P9811V000000000000FE06I00794FB1_0.marvin,S=2588:2,S) failed: Cached message size larger than expected (2588 > 2482, box=Sent, UID=19288) (read reason=mail stream)
nov 16 13:53:08 marcos dovecot[3520770]: imap(anarcat)<3594402><M5JHb+zQ3NLAqAB1>: Error: Mailbox Sent: Deleting corrupted cache record uid=19288: UID 19288: Broken physical size in mailbox Sent: read(/home/anarcat/Maildir/.Sent/cur/1224790447.M898726P9811V000000000000FE06I00794FB1_0.marvin,S=2588:2,S) failed: Cached message size larger than expected (2588 > 2482, box=Sent, UID=19288)
nov 16 13:53:08 marcos dovecot[3520770]: imap(anarcat)<3594402><M5JHb+zQ3NLAqAB1>: Error: Mailbox Sent: UID=19288: read(/home/anarcat/Maildir/.Sent/cur/1224790447.M898726P9811V000000000000FE06I00794FB1_0.marvin,S=2588:2,S) failed: Cached message size larger than expected (2588 > 2482, box=Sent, UID=19288) (read reason=)
nov 16 13:53:08 marcos dovecot[3520770]: imap-login: Panic: epoll_ctl(del, 7) failed: Bad file descriptor

This second problem is much harder to fix, because dovecot does not recover automatically. This is Dovecot complaining that the cached size (the S= field, but also present in Dovecot's metadata files) doesn't match the file size. I wonder if at least some of those messages were corrupted in the OfflineIMAP to syncmaildir migration because part of that procedure is to run the strip_header script to remove content from the emails. That could easily have broken things since the files do not also get renamed.

Workaround So I read a lot of the Dovecot documentation on the maildir format, and wrote an extensive fix script for those two errors. The script worked and mbsync was able to sync the entire mail spool. And no, rebuilding the index files didn't work. Also tried doveadm force-resync -u anarcat which didn't do anything. In the end I also had to do this, because the wrong cache values were also stored elsewhere.

service dovecot stop ; find -name 'dovecot*' -delete; service dovecot start

This would have totally broken any existing clients, but thankfully I'm starting from scratch (except maybe webmail, but I'm hoping it will self-heal as well, assuming it only has a cache and not a full replica of the mail spool).

Incoherence between Maildir and IMAP Unfortunately, the first mbsync was incomplete as it was missing about 15,000 mails:

anarcat@angela:~(main)$ find Maildir -type f -type f -a \! -name '.*'   wc -l 
384836
anarcat@angela:~(main)$ find Maildir-mbsync/ -type f -a \! -name '.*'   wc -l 
369221

As it turns out, mbsync was not at fault here either: this was yet more mail spool corruption. It's actually 26 folders (out of 205) with inconsistent sizes, which can be found with:

for folder in * .[^.]* ; do 
  printf "%s\t%d\n" $folder $(find "$folder" -type f -a \! -name '.*'   wc -l );
done

The special \! -name '.*' bit is to ignore the mbsync metadata, which creates .uidvalidity and .mbsyncstate in every folder. That ignores about 200 files but since they are spread around all folders, which was making it impossible to review where the problem was. Here is what the diff looks like:

--- Maildir-list    2021-11-17 20:42:36.504246752 -0500
+++ Maildir-mbsync-list 2021-11-17 20:18:07.731806601 -0500
@@ -6,16 +6,15 @@
[...]
 .Archives  1
 .Archives.2010 3553
-.Archives.2011 3583
-.Archives.2012 12593
+.Archives.2011 3582
+.Archives.2012 620
 .Archives.2013 8576
 .Archives.2014 11057
-.Archives.2015 8173
+.Archives.2015 8165
 .Archives.2016 54
 .band  34
 .bitbuck   1
@@ -38,13 +37,12 @@
 .couchsurfers  2
-cur    11285
+cur    11280
 .current   130
 .cv    2
 .debbug    262
-.debian    37544
-drafts 1
-.Drafts    4
+.debian    37533
+.Drafts    2
 .drone 241
 .drupal    188
 .drupal-devel  303
[...]

Misfiled messages It's a bit all over the place, but we can already notice some huge differences between mailboxes, for example in the Archives folders. As it turns out, at least 12,000 of those missing mails were actually misfiled: instead of being in the Maildir/.Archives.2012/cur/ folder, they were directly in Maildir/.Archives.2012/. This is something that doesn't matter for SMD (and possibly for notmuch? it does matter, notmuch suddenly found 12,000 new mails) but that definitely matters to Dovecot and therefore mbsync... After moving those files around, we still have 4,000 message missing:

anarcat@angela:~(main)$ find Maildir-mbsync/  -type f -a \! -name '.*'   wc -l 
381196
anarcat@angela:~(main)$ find Maildir/  -type f -a \! -name '.*'   wc -l 
385053

The problem is that those 4,000 missing mails are harder to track. Take, for example, .Archives.2011, which has a single message missing, out of 3,582. And the files are not identical: the checksums don't match after going through the IMAP transport, so we can't use a tool like hashdeep to compare the trees and find why any single file is missing.

"register" folder One big chunk of the 4,000, however, is a special folder called register in my spool, which I am syncing separately (see Securing registration email for details on that setup). That actually covers 3,700 of those messages, so I actually have a more modest 300 messages to figure out, after (easily!) configuring mbsync to sync that folder separately:

 @@ -30,9 +33,29 @@ Slave :anarcat-local:
  # Exclude everything under the internal [Gmail] folder, except the interesting folders
  #Patterns * ![Gmail]* "[Gmail]/Sent Mail" "[Gmail]/Starred" "[Gmail]/All Mail"
  # Or include everything
 -Patterns *
 +#Patterns *
 +Patterns * !register  !.register
  # Automatically create missing mailboxes, both locally and on the server
  #Create Both
  Create slave
  # Sync the movement of messages between folders and deletions, add after making sure the sync works
  #Expunge Both
 +
 +IMAPAccount anarcat-register
 +Host imap.anarc.at
 +User register
 +PassCmd "pass imap.anarc.at-register"
 +SSLType IMAPS
 +CertificateFile /etc/ssl/certs/ca-certificates.crt
 +
 +IMAPStore anarcat-register-remote
 +Account anarcat-register
 +
 +MaildirStore anarcat-register-local
 +SubFolders Maildir++
 +Inbox ~/Maildir-mbsync/.register/
 +
 +Channel anarcat-register
 +Master :anarcat-register-remote:
 +Slave :anarcat-register-local:
 +Create slave

"tmp" folders and empty messages After syncing the "register" messages, I end up with the measly little 160 emails out of sync:

anarcat@angela:~(main)$ find Maildir-mbsync/  -type f -a \! -name '.*'   wc -l 
384900
anarcat@angela:~(main)$ find Maildir/  -type f -a \! -name '.*'   wc -l 
385059

Argh. After more digging, I have found 131 mails in the tmp/ directories of the client's mail spool. Mysterious! On the server side, it's even more files, and not the same ones. Possible that those were mails that were left there during a failed delivery of some sort, during a power failure or some sort of crash? Who knows. It could be another race condition in SMD if it runs while mail is being delivered in tmp/... The first thing to do with those is to cleanup a bunch of empty files (21 on angela):

find .[^.]*/tmp -type f -empty -delete

As it turns out, they are all duplicates, in the sense that notmuch can easily find a copy of files with the same message ID in its database. In other words, this hairy command returns nothing

find .[^.]*/tmp -type f   while read path; do
  msgid=$(grep -m 1  -i ^message-id "$path"   sed 's/Message-ID: //i;s/[<>]//g');
  if notmuch count --exclude=false  "id:$msgid"   grep -q 0; then
    echo "$path <$msgid> not in notmuch" ;
  fi;
done

... which is good. Or, to put it another way, this is safe:

find .[^.]*/tmp -type f -delete

Poof! 314 mails cleaned on the server side. Interestingly, SMD doesn't pick up on those changes at all and still sees files in tmp/ directories on the client side, so we need to operate the same twisted logic there.

notmuch to the rescue again After cleaning that on the client, we get:

anarcat@angela:~(main)$ find Maildir/  -type f -a \! -name '.*'   wc -l 
384928
anarcat@angela:~(main)$ find Maildir-mbsync/  -type f -a \! -name '.*'   wc -l 
384901

Ha! 27 mails difference. Those are the really sticky, unclear ones. I was hoping a full sync might clear that up, but after deleting the entire directory and starting from scratch, I end up with:

anarcat@angela:~(main)$ find Maildir -type f -type f -a \! -name '.*'   wc -l 
385034
anarcat@angela:~(main)$ find Maildir-mbsync -type f -type f -a \! -name '.*'   wc -l 
384993

That is: even more messages missing (now 37). Sigh. Thankfully, this is something notmuch can help with: it can index all files by Message-ID (which I learned is case-insensitive, yay) and tell us which messages don't make it through. Considering the corruption I found in the mail spool, I wouldn't be the least surprised those messages are just skipped by the IMAP server. Unfortunately, there's nothing on the Dovecot server logs that would explain the discrepancy. Here again, notmuch comes to the rescue. We can list all message IDs to figure out that discrepancy:

notmuch search --exclude=false --output=messages '*'   pv -s 18M   sort > Maildir-msgids
notmuch --config=.notmuch-config-mbsync search --exclude=false --output=messages '*'   pv -s 18M   sort > Maildir-mbsync-msgids

And then we can see how many messages notmuch thinks are missing:

$ wc -l *msgids
372723 Maildir-mbsync-msgids
372752 Maildir-msgids

That's 29 messages. Oddly, it doesn't exactly match the find output:

anarcat@angela:~(main)$ find Maildir-mbsync -type f -type f -a \! -name '.*'   wc -l 
385204
anarcat@angela:~(main)$ find Maildir -type f -type f -a \! -name '.*'   wc -l 
385241

That is 10 more messages. Ugh. But actually, I know what those are: more misfiled messages (in a .folder/draft/ directory, bizarrely, so the totals actually match. In the notmuch output, there's a lot of stuff like this:

id:notmuch-sha1-fb880d673e24f5dae71b6b4d825d4a0d5d01cde4

Those are messages without a valid Message-ID. Notmuch (presumably) constructs one based on the file's checksum. Because the files differ between the IMAP server and the local mail spool (which is unfortunate, but possibly inevitable), those do not match. There are exactly the same number of those on both sides, so I'll go ahead and assume those are all accounted for. What remains is:

anarcat@angela:~(main)$ diff -u Maildir-mbsync-msgids Maildir-msgids    grep '^\-[^-]'   grep -v sha1   wc -l 
2
anarcat@angela:~(main)$ diff -u Maildir-mbsync-msgids Maildir-msgids    grep '^\+[^+]'   grep -v sha1   wc -l 
21
anarcat@angela:~(main)$ 

ie. 21 missing from mbsync, and, surprisingly, 2 missing from the original mail spool. Further inspection also showed they were all messages with some sort of "corruption": no body and only headers. I am not sure that is a legal email format in the first place. Since they were mostly spam or administrative emails ("You have been unsubscribed from mailing list..."), it seems fairly harmless to ignore those.

Conclusion As we'll see in the next article, SMD has stellar performance. But that comes at a huge cost: it accesses the mail storage directly. This can (and has) created significant problems on the mail server. It's unclear exactly why those things happen, but Dovecot expects a particular storage format on its file, and it seems unwise to bypass that. In the future, I'll try to remember to avoid that, especially since mechanisms like SMD require special server access (SSH) which, in the long term, I am not sure I want to maintain or expect. In other words, just talking with an IMAP server opens up a lot more possibilities of hosting than setting up a custom synchronisation protocol over SSH. It's also safer and more reliable, as we have seen. Thankfully, I've been able to recover from all the errors I could find, but it could have gone differently and it would have been possible for SMD to permanently corrupt significant part of my mail archives. In the end, however, the last drop was just another weird bug which, ironically, SMD mysteriously recovered from on its own while I was writing this documentation and migrating away from it. In any case, I recommend SMD users start looking for alternatives. The project has been archived upstream, and the Debian package has been orphaned. I have seen significant mail box corruption, including entire mail spool destruction, mostly due to incorrect locking code. I have filed a release-critical bug in Debian to make sure it doesn't ship with Debian bookworm. Alternatives like mbsync provide fast and reliable transport, including over SSH. See the next article for further discussion of the alternatives.

• If you've wanted to compare multiple files in different branches of the same tree - without needing to commit on either side.
• If you want to work on two (or more) versions of the same file at the same time, again without needing to commit.
• You have a file or a bunch of files that aren't ready to be committed, even locally.
• You are working on a development branch and an urgent fix is required on an old git tag.
• You have a large git repository which is a burden to clone (or has complex submodules).

git worktree add -b branch_name ../branch_name

git worktree add ../branch_name branch_name

git worktree list
/home/neil/Documents/testing/testrepo        0612677 [master]
/home/neil/Documents/testing/testtree        d38f5a3 [testtree]

git add data/CVE/list
git commit
# pre commit hook runs here
git log -n 1
# copy the hash
# switch to master terminal
git pull
git cherry-pick <HASH>
git push
# switch to server terminal
git rebase master
# no git pull or fetch, it's all local
make
# switch back to changes terminal
git rebase master

• Bastian Germann (bage)
• G rkan Myczko (tar)

• Clay Stan
• Daniel Milde
• David da Silva Polverari
• Sunday Cletus Nkwuda
• Ma Aiguo
• Sakirnth Nagarasa

[She] came round to me and put her arm around my waist and said under her breath, "Hey, she can be taught," with a tease in her voice that wobbled a little, and when I looked at her, her eyes were bright and wet, and I put my arm around her shoulders and hugged her.

• When the lid is closed, suspend if no external monitor is connected. If an external monitor is connected, shut off the built-in display and use the external one exclusively, but do not suspend.
• Lock the screen automatically after a period of inactivity.
• While locked, all connected displays should be powered down.
• When an external display is connected, begin using it automatically.
• When an external display is disconnected, stop using it. If the lid is closed when the external display is disconnected, go into suspend mode.

• In /etc/systemd/logind.conf, there are settings about what to do when the lid is opened or closed.
• Various desktop environments have overlapping settings covering the same things.
• Then there are the display managers (gdm3, lightdm, etc) that also get in on the act, and frequently have DIFFERENT settings, set in different places, from the desktop environments. And, what s more, they tend to be involved with locking these days.
• Then there are screensavers (gnome-screensaver, xscreensaver, etc.) that also enter the picture, and also have settings in these areas.

1. Be logged in and using the desktop
2. Without locking the desktop screen, switch the display input to another device
3. Keep the display input on another device long enough for the desktop screen to auto-lock
4. At this point, it is impossible to re-awaken the desktop screen.

sleep-inactive-ac-timeout=60
sleep-inactive-ac-type='blank'
sleep-inactive-battery-timeout=120
sleep-inactive-battery-type='suspend'

blinkenlights!

1. External drive is plugged in. systemd instantiates a corresponding device unit, named dev-disk-by\x2duuid-aaaaaaaa\x2daaaa\x2daaaa\x2daaaa\x2daaaaaaaaaaaa.device, where aaaa is the UUID of a partition on the device
2. The backup job is a systemd service which has a WantedBy relationship on the device unit, so when the device appears, systemd starts the backup service.
3. The backup service has Requires and After relationships on systemd-cryptsetup@extbackup.service, a service created by systemd's cryptsetup generator on start-up (but slightly customised, see below). The encrypted device is therefore unlocked.
4. The backup service defines multiple start and stop commands with ExecStart and ExecStop. These are used to:
   1. set the blinkstick to the working colour (blue-ish)
   2. mount the now-decrypted filesystem
   3. get a lock on the backup repository (so nothing else writes to it) and synchronise the files
   4. unmount the filesystem
   5. set the blinkstick to the success colour (green)
5. Finally, the systemd-cryptsetup@extbackup.service unit realises it is not required any more. It has been customised with StopWhenUnneeded=true¹, so the encrypted filesystem is closed, ready for the drive to be removed.
6. I notice the LED colour is green, remove the drive, and take it to its off-site home.

OnFailure=status-email-user@%n.service blinkstick-fail.service

• set up a decryption key file as well as (or instead of) a pass- phrase and store that somewhere on the filesystem of the NAS
• back up the LUKS header, as the cryptsetup documentation stresses you should
• make a note of the underlying partition UUID: it's needed for the WantedBy line in the backup service file. (look in /dev/disk/by-uuid before and after inserting it and see what was added)
• label the filesystem on top of the encrypted device for convenience
• set up a /etc/crypttab line with all the info needed to decrypt
• set up a /etc/fstab line with all the info needed to mount (yes, really; see "Issues" below)

 [Unit]
 OnFailure=status-email-user@%n.service blinkstick-fail.service
 Requires=systemd-cryptsetup@extbackup.service backup.mount
 After=systemd-cryptsetup@extbackup.service backup.mount
 [Service]
 Type=oneshot
 ExecStart=/usr/local/bin/blinkstick --index 1 --limit 10 --set-color 33c280
 ExecStart=/bin/mount /extbackup
 ExecStart=/home/jon/bin/phobos-backup-monthly
 ExecStop=/bin/umount /extbackup
 ExecStop=/usr/local/bin/blinkstick --index 1 --limit 10 --set-color green
 [Install]
 WantedBy=dev-disk-by\x2duuid-aaaaaaaa\x2daaaa\x2daaaa\x2daaaa\x2daaaaaaaaaaaa.device

Inter-canister calls The Internet Computer system provides inter-canister communication that follows the actor model: Inter-canister calls are implemented via two asynchronous messages, one to initiate the call, and one to return the response. Canisters process messages atomically (and roll back upon certain error conditions), but not complete calls. This makes programming with inter-canister calls error-prone. Possible common sources for bugs, vulnerabilities or simply unexpected behavior are:

• Reading global state before issuing an inter-canister call, and assuming it to still hold when the call comes back.
• Changing global state before issuing an inter-canister call, changing it again in the response handler, but assuming nothing else changes the state in between (reentrancy).
• Changing global state before issuing an inter-canister call, and not handling failures correctly, e.g. when the code handling the callback rolls backs.

If you find such pattern in your code, you should analyze if a malicious party can trigger them, and assess the severity that effect These issues apply to all canisters, and are not Motoko-specific.

Rollbacks Even in the absence of inter-canister calls the behavior of rollbacks can be surprising. In particular, rejecting (i.e. throw) does not rollback state changes done before, while trapping (e.g. Debug.trap, assert , out of cycle conditions) does. Therefore, one should check all public update call entry points for unwanted state changes or unwanted rollbacks. In particular, look for methods (or rather, messages, i.e. the code between commit points) where a state change is followed by a throw. This issues apply to all canisters, and are not Motoko-specific, although other CDKs may not turn exceptions into rejects (which don t roll back).

Talking to malicious canisters Talking to untrustworthy canisters can be risky, for the following (likely incomplete) reasons:

• The other canister can withhold a response. Although the bidirectional messaging paradigm of the Internet Computer was designed to guarantee a response eventually, the other party can busy-loop for as long as they are willing to pay for before responding. Worse, there are ways to deadlock a canister.
• The other canister can respond with invalidly encoded Candid. This will cause a Motoko-implemented canister to trap in the reply handler, with no easy way to recover. Other CDKs may give you better ways to handle invalid Candid, but even then you will have to worry about Candid cycle bombs that will cause your reply handler to trap.

Many canisters do not even do inter-canister calls, or only call other trustwothy canisters. For the others, the impact of this needs to be carefully assessed.

Canister upgrade: overview For most services it is crucial that canisters can be upgraded reliably. This can be broken down into the following aspects:

1. Can the canister be upgraded at all?
2. Will the canister upgrade retain all data?
3. Can the canister be upgraded promptly?
4. Is three a recovery plan for when upgrading is not possible?

Canister upgradeability A canister that traps, for whatever reason, in its canister_preupgrade system method is no longer upgradeable. This is a major risk. The canister_preupgrade method of a Motoko canister consists of the developer-written code in any system func preupgrade() block, followed by the system-generated code that serializes the content of any stable var into a binary format, and then copies that to stable memory. Since the Motoko-internal serialization code will first serialize into a scratch space in the main heap, and then copy that to stable memory, canisters with more than 2GB of live data will likely be unupgradeable. But this is unlikely the first limit: The system imposes an instruction limit on upgrading a canister (spanning both canister_preupgrade and canister_postupgrade). This limit is a subnet configuration value, and sepearate (and likely higher) than the normal per-message limit, and not easily determined. If the canister s live data becomes too large to be serialized within this limit, the canister becomes non-upgradeable. This risk cannot be eliminated completely, as long as Motoko and Stable Variables are used. It can be mitigated by appropriate load testing: Install a canister, fill it up with live data, and exercise the upgrade. If this succeeds with a live data set exceeding the expected amount of data by a margin, this risk is probably acceptable. Bonus points for adding functionality that will prevent the canister s live data to increase above a certain size. If this testing is to be done on a local replica, extra care needs to be taken to make sure the local replica actually performs instruction counting and has the same resource limits as the production subnet. An alternative mitigation is to avoid canister_pre_upgrade as much as possible. This means no use of stable var (or restricted to small, fixed-size configuration data). All other data could be

• mirrored off the canister (possibly off chain), and manually re-hydrated after an upgrade.
• stored in stable memory manually, during each update call, using the ExperimentalStableMemory API. While this matches what high-assurance Rust canisters (e.g. the Internet Identity) do, This requires manual binary encoding of the data, and is marked experimental, so I cannot recommend this at the moment.
• not put into a Motoko canister until Motoko has a scalable solution for stable variable (for example keeping them in stable memory permanently, with smart caching in main memory, and thus obliterating the need for pre-upgrade code.)

Data retention on upgrades Obviously, all live data ought to be retained during upgrades. Motoko automatically ensures this for stable var data. But often canisters want to work with their data in a different format (e.g. in objects that are not shared and thus cannot be put in stable vars, such as HashMap or Buffer objects), and thus may follow following idiom:

stable var fooStable =  ;
var foo = fooFromStable(fooStable);
system func preupgrade()   fooStable := fooToStable(foo);  )
system func postupgrade()   fooStable := (empty);  )

In this case, it is important to check that

• All non-stable global vars, or global lets with mutable values, have a stable companion.
• The assignments to foo and fooStable are not forgotten.
• The fooToStable and fooFromStable form bijections.

An example would be HashMaps stored as arrays via Iter.toArray( .entries()) and HashMap.fromIter( .vals()). It is worth pointiong out that a code view will only look at a single version of the code, but cannot check whether code changes will preserve data on upgrade. This can easily go wrong if the names and types of stable variables are changed in incompatible way. The upgrade may fail loudly in this cases, but in bad cases, the upgrade may even succeed, losing data along the way. This risk needs to be mitigated by thorough testing, and possibly backups (see below).

Prompt upgrades Motoko and Rust canisters cannot be safely upgraded when they are still waiting for responses to inter-canister calls (the callback would eventually reach the new instance, and because of infelicities of the IC s System API, could possibly call arbitrary internal functions). Therefore, the canister needs to be stopped before upgrading, and started again. If the inter-canister calls take a long time, this mean that upgrading may take a long time, which may be undesirable. Again, this risk is reduced if all calls are made to trustworthy canisters, and elevated when possibly untrustworthy canisters are called, directly or indirectly.

Backup and recovery Because of the above risk around upgrades it is advisable to have a disaster recovery strategy. This could involve off-chain backups of all relevant data, so that it is possible to reinstall (not upgrade) the canister and re-upload all data. Note that reinstall has the same issue as upgrade described above in prompt upgrades : It ought to be stopped first to be safe. Note that the instruction limit for messages, as well as the message size limit, limit the amount of data returned. If the canister needs to hold more data than that, the backup query method might have to return chunks or deltas, with all the extra complexity that entails, e.g. state changes between downloading chunks. If large data load testing is performed (as Irecommend anyways to test upgradeability), one can test whether the backup query method works within the resource limits.

Time is not strictly monotonic The timestamps for current time that the Internet Computer provides to its canisters is guaranteed to be monotonic, but not strictly monotonic. It can return the same values, even in the same messages, as long as they are processed in the same block. It should therefore not be used to detect happens-before relations. Instead of using and comparing time stamps to check whether Y has been performed after X happened last, introduce an explicit var y_done : Bool state, which is set to False by X and then to True by Y. When things become more complex, it will be easier to model that state via an enumeration with speaking tag names, and update this state machine along the way. Another solution to this problem is to introduce a var v : Nat counter that you bump in every update method, and after each await. Now v is your canister s state counter, and can be used like a timestamp in many ways. While we are talking about time: The system time (typically) changes across an await. So if you do let now = Time.now() and then await, the value in now may no longer be what you want.

Wrapping arithmetic The Nat64 data type, and the other fixed-width numeric types provide opt-in wrapping arithmetic (e.g. +%, fromIntWrap). Unless explicitly required by the current application, this should be avoided, as usually a too large or negatie value is a serious, unrecoverable logic error, and trapping is the best one can do.

Cycle balance drain attacks Because of the IC s canister pays model, all canisters are prone to DoS attacks by draining their cycle balance, and this risk needs to be taken into account. The most elementary mitigation strategy is to monitor the cycle balance of canisters and keep it far from the (configurable) freezing threshold. On the raw IC-level, further mitigation strategies are possible:

• If all update calls are authenticated, perform this authentication as quickly as possible, possibly before decoding the caller s argument. This way, a cycle drain attack by an unauthenticated attacker is less effective (but still possible).
• Additionally, implementing the canister_inspect_message system method allows the above checks to be performed before the message even is accepted by the Internet Computer. But it does not defend against inter-canister messages and is therefore not a complete solution.
• If an attack from an authenticated user (e.g. a stakeholder) is to be expected, the above methods are not effective, and an effective defense might require relatively involved additional program logic (e.g. per-caller statistics) to detect such an attack, and react (e.g. rate-limiting).
• Such defenses are pointless if there is only a single method where they do not apply (e.g. an unauthenticated user registration method). If the application is inherently attackable this way, it is not worth the bother to raise defenses for other methods.

Related: A justification why the Internet Identity does not use canister_inspect_message) A motoko-implemented canister currently cannot perform most of these defenses: Argument decoding happens unconditionally before any user code that may reject a message based on the caller, and canister_inspect_message is not supported. Furthermore, Candid decoding is not very cycle defensive, and one should assume that it is possible to construct Candid messages that require many instructions to decode, even for simple argument type signatures. The conclusion for the audited canisters is to rely on monitoring to keep the cycle blance up, even during an attack, if the expense can be born, and maybe pray for IC-level DoS protections to kick in.

Large data attacks Another DoS attack vector exists if public methods allow untrustworthy users to send data of unlimited size that is persisted in the canister memory. Because of the translation of async-await code into multiple message handlers, this applies not only to data that is obviously stored in global state, but also local data that is live across an await point. The effectiveness of such attacks is limited by the Internet Computer s message size limit, which is in the order of a few megabytes, but many of those also add up. The problem becomes much worse if a method has an argument type that allows a Candid space bomb: It is possible to encode very large vectors with all values null in Candid, so if any method has an argument of type [Null] or [?t], a small message will expand to a large value in the Motoko heap. Other types to watch out:

• Nat and Int: This is an unbounded natural number, and thus can be arbitrarily large. The Motoko representation will however not be much larger than the Candid encoding (so this does not qualify as a space bomb).

It is still advisable to check if the number is reasonable in size before storing it or doing an await. For example, when it denotes an index in an array, throw early if it exceeds the size of the array; if it denotes a token amount to transfer, check it against the available balance, if it denotes time, check it against reasonable bounds.

• Principal: A Principal is effectively a Blob. The Interface specification says that principals are at most 29 bytes in length, but the Motoko Candid decoder does not check that currently (fixed in the next version of Motoko). Until then, a Principal passed as an argument can be large (the principal in msg.caller is system-provided and thus safe). If you cannot wait for the fix to reach you, manually check the size of the princial (via Principal.toBlob) before doing the await.

Shadowing of msg or caller Don t use the same name for the message context of the enclosing actor and the methods of the canister: It is dangerous to write shared(msg) actor, because now msg is in scope across all public methods. As long as these also use public shared(msg) func , and thus shadow the outer msg, it is correct, but it if one accidentially omits or mis-types the msg, no compiler error would occur, but suddenly msg.caller would now be the original controller, likely defeating an important authorization step. Instead, write shared(init_msg) actor or shared( caller = controller ) actor to avoid using msg.

Conclusion If you write a serious canister, whether in Motoko or not, it is worth to go through the code and watch out for these patterns. Or better, have someone else review your code, as it may be hard to spot issues in your own code. Unfortunately, such a list is never complete, and there are surely more ways to screw up your code in addition to all the non-IC-specific ways in which code can be wrong. Still, things get done out there, so best of luck!

• Reworked the dense stereo processing. This is now documented, with nice APIs. Rectified models can be represented in a .cameramodel file, and saved to disk.
• Added sparse triangulation routines. Uncertainty can be propagated through these routines to gauge the effects of calibration-time and observation-time noise.
• LENSMODEL_SPLINED_STEREOGRAPHIC models have been thoroughly tested, and are ready for prime time. Solver now applies anisotropic regularization to reduce curl in the correction vector field, so the solved models now act mostly radially. The mrcal-show-splined-model-correction tool extended, and produces clearer plots. These models work well. Use them.
• The observed_pixel_uncertainty is now estimated from the optimized residuals instead of being specified explicitly. The reported uncertainties should now be correct in absolute, not just relative terms
• mrcal.unproject() can report gradients
• Calibration residuals can be visualized from the stored cameramodel, not just from mrcal-calibrate-cameras --explore. Added new tools
  • mrcal-show-residuals-board-observation
  • mrcal-show-residuals
  and new Python API functions
  • mrcal.show_residuals_board_observation()
  • mrcal.show_residuals_histogram()
  • mrcal.show_residuals_vectorfield()
  • mrcal.show_residuals_magnitudes()
  • mrcal.show_residuals_directions()
  • mrcal.show_residuals_regional()
• .cameramodel files can be read/written from C
• Added simple projection/unprojection functions to the Python and C APIs:
  • mrcal.project_pinhole()
  • mrcal.unproject_pinhole()
  • mrcal.project_latlon()
  • mrcal.unproject_latlon()
  • mrcal.project_lonlat()
  • mrcal.unproject_lonlat()
  This is added to the existing functions
  • mrcal.project_stereographic()
  • mrcal.unproject_stereographic()
• Added LENSMODEL_LATLON and LENSMODEL_LONLAT models to represent epipolar-aligned and panoramic images respectively

• Thin provisioned full and incremental backups.
• Compression (lz4).
• Freezing the virtual machine guest fs via qemu-agent (if installed)
• Multithreaded backup, if multiple disks are attached.
• Point in time recovery to a given incremental backup.
• Includes nbdkit plugin and utility that allows to map the thin provisioned backup images to a block device, for single file or instant recovery (boot the virtual machine directly from the backup image)

 <domain type='kvm' id='1' xmlns:qemu='http://libvirt.org/schemas/domain/qemu/1.0'>
 [..]
 <qemu:capabilities>
   <qemu:add capability='incremental-backup'/>
 </qemu:capabilities>
 [..]
 </domain>

# virtnbdbackup -d vm2 -l full -o /tmp/WEEKLY_BACKUP/
 [..]
[2021-11-08 15:43:46] INFO virtnbdbackup - main [MainThread]: Backup jobs finished, stopping backup task.
[2021-11-08 15:43:46] INFO virtnbdbackup - main [MainThread]: Finished
# tree /tmp/WEEKLY_BACKUP/
 /tmp/WEEKLY_BACKUP/
  backup.full.11082021154343.log
  checkpoints
    virtnbdbackup.0.xml
  sda.full.data
  vm2.cpt
  vmconfig.virtnbdbackup.0.xml

 # virtnbdbackup -d vm2 -l inc -o /tmp/WEEKLY_BACKUP/
 # tree /tmp/WEEKLY_BACKUP/
 /tmp/WEEKLY_BACKUP/
  backup.full.11082021154343.log
  backup.inc.11082021154538.log
  checkpoints
    virtnbdbackup.0.xml
    virtnbdbackup.1.xml
  sda.full.data
  sda.inc.virtnbdbackup.1.data
  vm2.cpt
  vmconfig.virtnbdbackup.0.xml
  vmconfig.virtnbdbackup.1.xml

 # virtnbdrestore -a restore -i /tmp/WEEKLY_BACKUP/ -o /tmp/VM_RESTORE

# virtnbdmap -f /tmp/WEEKLY_BACKUP/sda.full.data
 [..] INFO virtnbdmap - <module> [MainThread]: Done mapping backup image to [/dev/nbd0]
 [..] INFO virtnbdmap - <module> [MainThread]: Press CTRL+C to disconnect
# fdisk -l /dev/nbd0
Disk /dev/nbd0: 2 GiB, 2147483648 bytes, 4194304 sectors

qemu-img create -b /dev/nbd0 -f qcow2 bootme.qcow2
qemu-system-x86_64 -enable-kvm -m 2000 -hda bootme.qcow2

https://lists.debian.org/debian-vote/2021/11/msg00034.html

https://lists.debian.org/debian-vote/2021/10/msg00002.html
https://lists.debian.org/debian-vote/2021/09/msg00010.html

https://lists.debian.org/debian-vote/2021/10/msg00019.html

Welcome to the October 2021 report from the Reproducible Builds project!
This month Samanta Navarro posted to the oss-security security mailing on a novel category of exploit in the .tar archive format, where a single .tar file contains different contents depending on the tar utility being used. Naturally, this has consequences for reproducible builds as Samanta goes onto reply:

Arch Linux uses libarchive (bsdtar) in its build environment. The default tar program installed is GNU tar. It is possible to create a source distribution which leads to different files seen by the build environment than compared to a careful reviewer and other Linux distributions.

I have submitted bug reports and patches to some projects but eventually I had to conclude that the problem itself cannot be fixed by these implementations alone. The best choice for these tools would be to only allow archives which are fully compatible to standards but this in turn would render a lot of archives broken.

Reproducibility, repeatability and traceability of builds, drawing heavily on best-practices championed by the Reproducible Builds project.

I got a PR in my repository a few days ago leading back to a team trying to make it easier for packages to be reproducible from source.

Events and presentations

• PackagingCon is a conference for developers of package management software, their communities and other stakeholders. This virtual event, which will take place on the 9th and 10th November 2021, has a mission is to bring different ecosystems together . The schedule for the event is now available to view online.
• The Linux Foundation s OpenSSF group announced that the next OpenSSF quarterly town hall will take place on 15th November 2021. Registration is now open.

• Last month, Wolfgang Mauerer gave a presentation at the MiniDebConf 2021 Regensburg about the Civil Infrastructure Platform that covered many subjects including Reproducible Builds. PDF slides of the talk are available, as is a video recording.
• In addition, Trevor Rosen from SolarWinds presented at the Linux Foundation s Supply Chain Security Con last month on incorporating in-toto into their build system. in-toto a framework to secure the integrity of software supply chains. Trevor also discusses building everything twice to validate the first build la reproducible builds. (PDF slides)
• Lastly, Mattia Rizzolo posted an update on the next Reproducible Builds in-person event to our mailing list: currently we are thinking ahead to 2022 .

Community news On our mailing list this month:

• Jeremiah announced the release of version 1.4 of stage0-posix, part of a broader effort to provide an ultra-minimal bootstrap seed to increase trust in our software stack.
• Chris Lamb mentioned that Azure are offering free compute power for open source projects which might be useful for one of the many rebuilder projects .
• kpcyrd announced the release of rebuilderd v0.15.0, but also linked to a Twitter thread that contains intro on how rebuilderd works and a walk-through on how to write custom integrations.
• Fredrik Str mberg offered an update on the Sigsum project and some specific milestones within transparency logging efforts: after a year of design iterations we have not only designed a transparency log but also decided to turn it into a project of its own .

There were quite a few changes to the Reproducible Builds website and documentation this month as well, including Feng Chai updating some links on our publications page [ ] and marco updated our project metadata around the Bitcoin Core building guide [ ].
Lastly, we ran another productive meeting on IRC during October. A full set of notes from the meeting is available to view.

Distribution work Qubes was heavily featured in the latest edition of Linux Weekly News, and a significant section was dedicated to discussing reproducibility. For example, it was mentioned that the Qubes project has been working on incorporating reproducible builds into its continuous integration (CI) infrastructure . But the LWN article goes on to describe that:

The current goal is to be able to build the Qubes OS Debian templates solely from packages that can be built reproducibly. Templates in Qubes OS are VM images that can be used to start an application qube quickly based on the template. The qube will have read-only access to the root filesystem of the template, so that the same root filesystem can be shared with multiple application qubes. There are official templates for several variants of both Fedora and Debian, as well as community maintained templates for several other distributions.

You can view the whole article on LWN, and Fr d ric also published a lengthy summary about their work on reproducible builds in Qubes as well for those wishing to learn more.
In Debian this month, 133 reviews of Debian packages were added, 81 were updated and 24 were removed this month, adding to Debian s ever-growing knowledge about identified issues. A number of issues were categorised and added by Chris Lamb and Vagrant Cascadian too [ ][ ][ ]. In addition, work on alternative snapshot service has made progress by Fr d ric Pierret and Holger Levsen this month, including moving from the existing host (snapshot.notset.fr) to snapshot.reproducible-builds.org (more info) thanks to OSUOSL for the machine and hosting and Debian for the disks.
Finally, Bernhard M. Wiedemann posted his monthly reproducible builds status report.

diffoscope diffoscope is our in-depth and content-aware diff utility. Not only can it locate and diagnose reproducibility issues, it can provide human-readable diffs from many kinds of binary formats. This month, Chris Lamb made the following changes, including preparing and uploading versions 186, 187, 188 and 189 to Debian

• New features:
  • Add support for Python Sphinx inventory files (usually named objects.inv on-disk). [ ]
  • Add support for comparing .pyc files. Thanks to Sergei Trofimovich for the inspiration. [ ]
  • Try some alternative suffixes (e.g. .py) to support distributions that strip or retain them. [ ][ ]
• Bug fixes:
  • Fix Python decompilation tests under Python 3.10+ [ ] and for Python 3.7 [ ].
  • Don t raise a traceback if we cannot unmarshal Python bytecode. This is in order to support Python 3.7 failing to load .pyc files generated with newer versions of Python. [ ]
  • Skip Python bytecode testing where we do not have an expected diff. [ ]
• Codebase improvements:
  • Use our file_version_is_lt utility instead of accepting both versions of uImage expected diff. [ ]
  • Split out a custom call to assert_diff for a .startswith equivalent. [ ]
  • Use skipif instead of manual conditionals in some tests. [ ]

In addition, Jelle van der Waa added external tool references for Arch Linux for ocamlobjinfo, openssl and ffmpeg [ ][ ][ ] and added Arch Linux as a Continuous Integration (CI) test target. [ ] and Vagrant Cascadian updated the testsuite to skip Python bytecode comparisons when file(1) is older than 5.39. [ ] as well as added external tool references for the Guix distribution for dumppdf and ppudump. [ ][ ]. Vagrant Cascadian also updated the diffoscope package in GNU Guix [ ][ ]. Lastly, Guangyuan Yang updated the FreeBSD package name on the website [ ], Mattia Rizzolo made a change to override a new Lintian warning due to the new test files [ ], Roland Clobus added support to detect and log if the GNU_BUILD_ID field in an ELF binary been modified [ ], Sandro J ckel updated a number of helpful links on the website [ ] and Sergei Trofimovich made the uImage test output support file() version 5.41 [ ].

reprotest reprotest is the Reproducible Build s project end-user tool to build same source code twice in widely differing environments, checking the binaries produced by the builds for any differences. This month, reprotest version 0.7.18 was uploaded to Debian unstable by Holger Levsen, which also included a change by Holger to clarify that Python 3.9 is used nowadays [ ], but it also included two changes by Vasyl Gello to implement realistic CPU architecture shuffling [ ] and to log the selected variations when the verbosity is configured at a sufficiently high level [ ]. Finally, Vagrant Cascadian updated reprotest to version 0.7.18 in GNU Guix.

Upstream patches The Reproducible Builds project detects, dissects and attempts to fix unreproducible packages. We try to send all of our patches upstream where appropriate. We authored a large number of such patches this month, including:

• Bernhard M. Wiedemann:
  • gtk4 (date-related issue)
  • ipxe (version upgrade)
  • libsoup2 (build failure in the future)
  • pari (parallelism-related issue)
• Chris Lamb:
  • #901307 filed against sphinx-gallery (re-opened with extensive updates).
  • #995809 filed against libinput.
  • #995865 filed against python-pipx.
  • #996200 filed against node-inquirer.
  • #996674 filed against libminidns-java.
  • #996834 filed against pytools.
  • #996881 filed against pikepdf.
  • #996948 filed against sphinx (forwarded upstream)
  • #996999 filed against fenics-basix.
  • #997000 filed against snakemake.
  • #997689 filed against smplayer.
  • #997949 filed against python-duniterpy.
  • #998104 filed against afnix.
  • #998059 filed against sphinx (forwarded upstream).
• Vagrant Cascadian:
  • #977684 filed against mahimahi (filed upstream).
  • #985187 filed against ffmpeg (forwarded upstream)
  • #995646 filed against abntex.
  • #995647 filed against cfi.
  • #995648 filed against cffi.
  • #995650 filed against chktex.
  • #995651 filed against fdutils.
  • #995652 filed against gnu-standards.
  • #995654 filed against malaga.
  • #995741 filed against latex-mk.
  • #995745 filed against kannel.
  • #995747 filed against xnee.
  • #995886, #995896, #995953 & #995954 filed against cxref.
  • #995960 filed against xnee.
  • #996184 filed against binutils-or1k-elf.
  • #996194 & #996572 filed against gcc-arm-none-eabi.
  • #996599 filed against xdmf.
  • #996679 filed against flightgear.
  • #997036 & #997037 filed against kvirc.

Testing framework The Reproducible Builds project runs a testing framework at tests.reproducible-builds.org, to check packages and other artifacts for reproducibility. This month, the following changes were made:

• Holger Levsen:
  • Debian-related changes:
    • Incorporate a fix from bremner into builtin-pho related to binary-NMUs. [ ]
    • Keep bullseye environments around longer, in an attempt to fix a Jenkins issue. [ ]
    • Improve the documentation of buildinfos.debian.net. [ ]
    • Improve documentation for the builtin-pho setup. [ ][ ]
  • OpenWrt-related changes:
    • Also use -j1 for better debugging. [ ]
    • Document that that Python 3.x is now used. [ ]
    • Enable further debugging for the toolchain build. [ ]
  • New snapshot.reproducible-builds.org service:
    • Actually add new node. [ ][ ]
    • Install xfsprogs on snapshot.reproducible-builds.org. [ ]
    • Create account for fpierret on new node. [ ]
    • Run node_health_check job on new node too. [ ]
• Mattia Rizzolo:
  • Debian-related changes:
    • Handle schroot errors when invoking diffoscope instead of masking them. [ ][ ]
    • Declare and define some variables separately to avoid masking the subshell return code. [ ]
    • Fix variable name. [ ]
    • Improve log reporting. [ ]
    • Execute apt-get update with the -q argument to get more decent logs. [ ]
    • Set the Debian HTTP mirror and proxy for snapshot.reproducible-builds.org. [ ]
    • Install the libarchive-tools package (instead of bsdtar) when updating Jenkins nodes. [ ]
  • Be stricter about errors when starting the node agent [ ] and don t overwrite NODE_NAME so that we can expect Jenkins to properly set for us [ ].
  • Explicitly warn if the NODE_NAME is not a fully-qualified domain name (FQDN). [ ]
  • Document whether a node runs in the future. [ ]
  • Disable postgresql_autodoc as it not available in bullseye. [ ]
  • Don t be so eager when deleting schroot internals, call to schroot -e to terminate the schroots instead. [ ]
  • Only consider schroot underlays for deletion that are over a month old. [ ][ ]
  • Only try to unmount /proc if it s actually mounted. [ ]
  • Move the db_backup task to its own Jenkins job. [ ]

Lastly, Vasyl Gello added usage information to the reproducible_build.sh script [ ].

Contributing If you are interested in contributing to the Reproducible Builds project, please visit our Contribute page on our website. However, you can get in touch with us via:

• IRC: #reproducible-builds on irc.oftc.net.
• Twitter: @ReproBuilds
• Mailing list: rb-general@lists.reproducible-builds.org