Search Results: "nate"

1 October 2016

Dirk Eddelbuettel: RcppAnnoy 0.0.8

An new version 0.0.8 of RcppAnnoy, our Rcpp-based R integration of the nifty Annoy library by Erik, is now on CRAN. Annoy is a small, fast, and lightweight C++ template header library for approximate nearest neighbours. This release pulls in a few suggested changes which had piled up since the last release. Changes in this version are summarized here:

Changes in version 0.0.8 (2016-10-01)
  • New functions getNNsByItemList and getNNsByVectorList, by Michael Phan-Ba in #12
  • Added destructor (PR #14 by Michael Phan-Ba)
  • Extended templatization (PR #11 by Dan Dillon)
  • Switched to run.sh for Travis (PR #17)
  • Added test for admissible value to addItem (PR #18 closing issue #13)

Courtesy of CRANberries, there is also a diffstat report for this release.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

Vincent Sanders: Paul Hollywood and the pistoris stone

There has been a great deal of comment among my friends recently about a particularly British cookery program called "The Great British Bake Off". There has been some controversy as the program is moving from the BBC to a commercial broadcaster.

Part of this discussion comes from all the presenters, excepting Paul Hollywood, declining to sign with the new broadcaster and partly because of speculation the BBC might continue with a similar format show with a new name.

Rob Kendrick provided the start to this conversation by passing on a satirical link suggesting Samuel L Jackson might host "cakes on a plane"

This caused a large number of suggestions for alternate names which I will be reporting but Rob Kendrick, Vivek Das Mohapatra, Colin Watson, Jonathan McDowell, Oki Kuma, Dan Alderman, Dagfinn Ilmari Manns ke, Lesley Mitchell and Daniel Silverstone are the ones to blame.




So that is our list, anyone else got better ideas?

Russ Allbery: Review: Sailing to Sarantium

Review: Sailing to Sarantium, by Guy Gavriel Kay
Series: Sarantine Mosaic #1
Publisher: HarperPrism
Copyright: 1998
Printing: January 2000
ISBN: 0-06-105990-0
Format: Mass market
Pages: 533
Crispin is a well-respected mosaicist, a Rhodian, heir to a long tradition of artistic accomplishment. Rhodias is largely in ruins, and the kings that fight over its land are far removed from the emperors of Rhodias at its height, but there's still demand for skilled craftsmanship. Crispin has a partner, assistants, and the opportunity to do at least adequate work. It's not a bad life, or at least wasn't before plague took his wife and daughters while he watched, helpless. Now, he's closed off, angry, and consumed by fatalism and futility. His partner, Martinian, could never say why, when the imperious and obnoxious courier came from the far-off and half-legendary of Sarantium to summon him to assist with the rebuilding of the Sanctuary of Jad, he pretended not to be himself and pointed the courier at Crispin instead. Nor was Crispin entirely sure why he played along, although the courier was so arrogant and officious that he invited such treatment. He had no intention of going in Martinian's place and name until his friends intervened, united in their conviction that he needed something to focus on and a reason to live. But nothing about Sarantium is simple. Even before Crispin leaves, the local queen, precariously balancing between warring factions, reveals her own reason to send Crispin to the capital of the far-off empire: using him as a desperate messenger to propose an alliance through marriage. And when he finally arrives, after unexpected perils on the road, he tumbles immediately into the deep complexities of the Sarantine court and its remarkable rulers. Most of Guy Gavriel Kay's work is historical fiction with the serial numbers partly filed off and some magic added. The degree to which the serial numbers are removed varies by work; here, the history is obvious. Sarantium is Byzantium, fallen Rhodias is Rome, and the emperor Valerius and his former dancer empress Alixana are clearly Justinian and Theodora. Knowing that will provide a lot of context, but can also be distracting, since the temptation to scramble for Wikipedia and line things up with real history is strong. I read this book the first time without knowing the history and this second time knowing it. I think I enjoyed it a bit more on its own terms, instead of as a reflection and reinterpretation. Either way, though, it's one of Kay's best novels, which is saying quite a bit. Sailing to Sarantium has two very different parts: Crispin's journey to Sarantium, and then what happens when he arrives. The first is a fairly linear travel narrative mixed with old religion, magic, and an experience in the woods that's a little disconnected from the rest of the story. The second is the fast-entangling politics and factionalism of the city itself, which wastes no time pulling Crispin into meetings with the most influential people at court. In my memory, I liked the Sarantium narrative the best, and found the travel story less significant. Re-reading, I'm not sure I agree with my earlier self. Kay does write some of the best conversations in fiction; if you want to see careful verbal maneuvering or gut reactions with wide-ranging consequences, I can't think of any author who shows both the words and the nuances as well as Kay. He makes the court maneuvering feel truly epic. Watching Crispin's blunt competence cut through the Sarantine court, and seeing him stay focused on his life work despite all those distractions, is a truly rewarding experience. But that second part of the book also has some structural problems, and a few characterization problems. The structural problem is that Kay wants to tell the same story from multiple angles, viewpoints, and timelines to show the reader every implication of the hornet's nest that Crispin kicks over, since quite a lot happens in the course of one day and night. This mostly works, but it is so laden with flashbacks, foreshadowing, and rewinds that I started losing track of the time relationship between the scenes. Kay is a very skilled author, so he avoids confusing the reader entirely, but I think he still tried too complex of a temporal structure here. The characterization problem is that I previously wasn't paying as close of attention to Kay's portrayal of women and of male sexual reactions to women. It didn't bother me before; this time, it started getting on my nerves. Yes, this is historical fiction (although limitations on roles for women in history is rather overstated in fiction), and to give Kay credit it does feature a very strong female character in Alixana. But the male protector and female seducer dynamic is very strong, and all the women in this book seem to get shoehorned into it. And perhaps I'm missing some weakness that other men have, but I have never had the sort of overwhelming, thought-destroying reaction to the presence of a seductive woman as Kay's men seem to routinely have in this book. To give Crispin credit, he maneuvers his way through those conversations without doing anything stupid. (Kay's characters very rarely do stupid things, which is refreshing.) But the effort required started undermining my suspension of disbelief. Even making allowances for a culture that might consider a woman with her hair down the equivalent of an entirely nude woman, I simply don't believe that a man who had been married with two daughters, had a long career, and had the life experience Crispin had would have that much difficulty with an aggressively seductive woman that he already doesn't trust. As a result, as much as I love Kay's political conversational fencing, I enjoyed the travel portion of the book more on this re-read. Crispin is a type of character Kay writes extremely well: an honest, honorable man trying to navigate unfamiliar waters without a lot of context, but with a firm sense of internal morality, a lot of natural intelligence, and a true passion for something. At one point in this book, another character decides to walk away from his current job and follow Crispin wherever he goes. Kay makes you believe that and want to do it yourself. It's a very rewarding experience as a reader to watch a character you can trust find careful, courageous, and tricky solutions to complicated problems. But I think the best part of this book is Kay's ability to put Crispin's art, the creation of mosaics, on the page in a way that lets the reader viscerally appreciate it. Crispin is passionate about mosaics, about how to make them and how to think about them, and the passion is contagious and forms the heart and soul of this novel. Kay manages to make mosaics overshadow some of the most dramatic politics in history, which says quite a lot. There is almost nothing I love more than reading about talented, passionate people doing things they are extremely good at. I know nothing about mosaic that I haven't read in this book and its sequel, so I have no basis from which to judge the accuracy of Kay's portrayal, but he made me feel like I could appreciate some of the nuance, skill, and design constraints of the art form. It's a wonderful reading experience. Sailing to Sarantium is best thought of half of a long book that was divided for publication reasons, so don't expect much of an ending here. It can only be read in combination with Lord of Emperors, which you'll want to have on hand when you finish this book so that you can continue the story. Followed by Lord of Emperors. Rating: 9 out of 10

29 September 2016

Dirk Eddelbuettel: gcbd 0.2.6

A pure maintenance release 0.2.6 of the gcbd package is now on CRAN. The gcbd proposes a benchmarking framework for LAPACK and BLAS operations (as the library can exchanged in a plug-and-play sense on suitable OSs) and records result in local database. Recent / upcoming changes to DBMI and RSQLite let me to update the package; there are no actual functionality changes in this release. CRANberries also provides a diffstat report for the latest release.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

Dirk Eddelbuettel: RcppCNPy 0.2.6

A new version of the RcppCNPy package arrived on CRAN a few days ago. RcppCNPy provides R with read and write access to NumPy files thanks to the cnpy library by Carl Rogers. This new release reflects all the suggestions and comments I received during the review process for the Journal of Open Source Software submission. I am happy to say that about twenty-nine days after I submitted, the paper was accepted and is now published.
Changes in version 0.2.6 (2016-09-25)
  • Expanded documentation in README.md
  • Added examples to help page
  • Added CITATION file for JOSS paper
CRANberries also provides a diffstat report for the latest release. As always, feedback is welcome and the best place to start a discussion may be the GitHub issue tickets page.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

27 September 2016

Kees Cook: security things in Linux v4.4

Previously: v4.3. Continuing with interesting security things in the Linux kernel, here s v4.4. As before, if you think there s stuff I missed that should get some attention, please let me know. seccomp Checkpoint/Restore-In-Userspace Tycho Andersen added a way to extract and restore seccomp filters from running processes via PTRACE_SECCOMP_GET_FILTER under CONFIG_CHECKPOINT_RESTORE. This is a continuation of his work (that I failed to mention in my prior post) from v4.3, which introduced a way to suspend and resume seccomp filters. As I mentioned at the time (and for which he continues to quote me) this feature gives me the creeps. :) x86 W^X detection Stephen Smalley noticed that there was still a range of kernel memory (just past the end of the kernel code itself) that was incorrectly marked writable and executable, defeating the point of CONFIG_DEBUG_RODATA which seeks to eliminate these kinds of memory ranges. He corrected this in v4.3 and added CONFIG_DEBUG_WX in v4.4 which performs a scan of memory at boot time and yells loudly if unexpected memory protection are found. To nobody s delight, it was shortly discovered the UEFI leaves chunks of memory in this state too, which posed an ugly-to-solve problem (which Matt Fleming addressed in v4.6). x86_64 vsyscall CONFIG I introduced a way to control the mode of the x86_64 vsyscall with a build-time CONFIG selection, though the choice I really care about is CONFIG_LEGACY_VSYSCALL_NONE, to force the vsyscall memory region off by default. The vsyscall memory region was always mapped into process memory at a fixed location, and it originally posed a security risk as a ROP gadget execution target. The vsyscall emulation mode was added to mitigate the problem, but it still left fixed-position static memory content in all processes, which could still pose a security risk. The good news is that glibc since version 2.15 doesn t need vsyscall at all, so it can just be removed entirely. Any kernel built this way that discovered they needed to support a pre-2.15 glibc could still re-enable it at the kernel command line with vsyscall=emulate . That s it for v4.4. Tune in tomorrow for v4.5!

2016, Kees Cook. This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License.
Creative Commons License

26 September 2016

Reproducible builds folks: Reproducible Builds: week 74 in Stretch cycle

Here is what happened in the Reproducible Builds effort between Sunday September 18 and Saturday September 24 2016: Outreachy We intend to participate in Outreachy Round 13 and look forward for new enthusiastic applications to contribute to reproducible builds. We're offering four different areas to work on: Reproducible Builds World summit #2 We are planning e a similar event to our Athens 2015 summit and expect to reveal more information soon. If you haven't been contacted yet but would like to attend, please contact holger. Toolchain development and fixes Mattia uploaded dpkg/1.18.10.0~reproducible1 to our experimental repository. and covered the details for the upload in a mailing list post. The most important change is the incorporation of improvements made by Guillem Jover (dpkg maintainer) to the .buildinfo generator. This is also in the hope that it will speed up the merge in the upstream. One of the other relevant changes from before is that .buildinfo files generated from binary-only builds will no longer include the hash of the .dsc file in Checksums-Sha256 as documented in the specification. Even if it was considered important to include a checksum of the source package in .buildinfo, storing it that way breaks other assumptions (eg. that Checksums-Sha256 contains only files part of that are part of a single upload, wheras the .dsc might not be part of that upload), thus we look forward for another solution to store the source checksum in .buildinfo. Bugs filed Reviews of unreproducible packages 250 package reviews have been added, 4 have been updated and 4 have been removed in this week, adding to our knowledge about identified issues. 4 issue types have been added: 3 issue types have been updated: Weekly QA work FTBFS bugs have been reported by: Documentation updates h01ger created a new Jenkins job so that every commit pushed to the master branch for the website will update reproducible-builds.org. diffoscope development strip-nondeterminism development reprotest development tests.reproducible-builds.org Misc. This week's edition was written by Chris Lamb, Holger Levsen and Mattia Rizzolo and reviewed by a bunch of Reproducible Builds folks on IRC.

25 September 2016

Vincent Sanders: I'll huff, and I'll puff, and I'll blow your house in

Sometimes it really helps to have a different view on a problem and after my recent writings on my Public Suffix List (PSL) library I was fortunate to receive a suggestion from my friend Enrico Zini.

I had asked for suggestions on reducing the size of the library further and Enrico simply suggested Huffman coding. This was a technique I had learned about long ago in connection with data compression and the intervening years had made all the details fuzzy which explains why it had not immediately sprung to mind.

A small subset of the Public Suffix List as stored within libnspslHuffman coding named for David A. Huffman is an algorithm that enables a representation of data which is very efficient. In a normal array of characters every character takes the same eight bits to represent which is the best we can do when any of the 256 values possible is equally likely. If your data is not evenly distributed this is not the case for example if the data was english text then the value is fifteen times more likely to be that for e than k.

every step of huffman encoding tree build for the example string tableSo if we have some data with a non uniform distribution of probabilities we need a way the data be encoded with fewer bits for the common values and more bits for the rarer values. To be efficient we would need some way of having variable length representations without storing the length separately. The term for this data representation is a prefix code and there are several ways to generate them.

Such is the influence of Huffman on the area of prefix codes they are often called Huffman codes even if they were not created using his algorithm. One can dream of becoming immortalised like this, to join the ranks of those whose names are given to units or whole ideas in a field must be immensely rewarding, however given Huffman invented his algorithm and proved it to be optimal to answer a question on a term paper in his early twenties I fear I may already be a bit too late.

The algorithm itself is relatively straightforward. First a frequency analysis is performed, a fancy way of saying count how many of each character is in the input data. Next a binary tree is created by using a priority queue initialised with the nodes sorted by frequency.

The resulting huffman tree and the binary representation of the input symbols
The two least frequent items count is summed together and a node placed in the tree with the two original entries as child nodes. This step is repeated until a single node exists with a count value equal to the length of the input.

To encode data once simply walks the tree outputting a 0 for a left node or 1 for right node until reaching the original value. This generates a mapping of values to bit output, the input is then simply converted value by value to the bit output. To decode the data the data is used bit by bit to walk the tree to arrive at values.

If we perform this algorithm on the example string table *!asiabvcomcoopitamazonawsarsaves-the-whalescomputebasilicata we can reduce the 488 bits (61 * 8 bit characters) to 282 bits or 40% reduction. Obviously in a real application the huffman tree would need to be stored which would probably exceed this saving but for larger data sets it is probable this technique would yield excellent results on this kind of data.

Once I proved this to myself I implemented the encoder within the existing conversion program. Although my perl encoder is not very efficient it can process the entire PSL string table (around six thousand labels using 40KB or so) in less than a second, so unless the table grows massively an inelegant approach will suffice.

The resulting bits were packed into 32bit values to improve decode performance (most systems prefer to deal with larger memory fetches less frequently) and resulted in 18KB of output or 47% of the original size. This is a great improvement in size and means the statically linked test program is now 59KB and is actually smaller than the gzipped source data.

$ ls -alh test_nspsl
-rwxr-xr-x 1 vince vince 59K Sep 25 23:58 test_nspsl
$ ls -al public_suffix_list.dat.gz
-rw-r--r-- 1 vince vince 62K Sep 1 08:52 public_suffix_list.dat.gz

To be clear the statically linked program can determine if a domain is in the PSL with no additional heap allocations and includes the entire PSL ordered tree, the domain label string table and the huffman decode table to read it.

An unexpected side effect is that because the decode loop is small it sits in the processor cache. This appears to cause the string comparison function huffcasecmp() (which is not locale dependant because we know the data will be limited ASCII) performance to be close to using strcasecmp() indeed on ARM32 systems there is a very modest improvement in performance.

I think this is as much work as I am willing to put into this library but I am pleased to have achieved a result which is on par with the best of breed (libpsl still has a data representation 20KB smaller than libnspsl but requires additional libraries for additional functionality) and I got to (re)learn an important algorithm too.

24 September 2016

Dirk Eddelbuettel: tint 0.0.1: Tint Is Not Tufte

A new experimental package is now on the ghrr drat. It is named tint which stands for Tint Is Not Tufte. It provides an alternative for Tufte-style html presentation. I wrote a bit more on the package page and the README in the repo -- so go read this. Here is just a little teaser of what it looks like:
and the full underlying document is available too. For questions or comments use the issue tracker off the GitHub repo. The package may be short-lived as its functionality may end up inside the tufte package.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

23 September 2016

Arturo Borrero Gonz lez: Blog moved from Blogger to Jekyllrb at GithubPages


This blog has finally moved away from blogger to jekyll, also changing the hosting and the domain. No new content will be published here.

New coordinates:

This blogger blog will remain as archive, since I don't plan to migrate the content from here to the new blog.

So, see you there!


22 September 2016

Gustavo Noronha Silva: WebKitGTK+ 2.14 and the Web Engines Hackfest

Next week our friends at Igalia will be hosting this year s Web Engines Hackfest. Collabora will be there! We are gold sponsors, and have three developers attending. It will also be an opportunity to celebrate Igalia s 15th birthday \o/. Looking forward to meet you there! =) Carlos Garcia has recently released WebKitGTK+ 2.14, the latest stable release. This is a great release that brings a lot of improvements and works much better on Wayland, which is becoming mature enough to be used by default. In particular, it fixes the clipboard, which was one of the main missing features, thanks to Carlos Garnacho! We have also been able to contribute a bit to this release =) One of the biggest changes this cycle is the threaded compositor, which was implemented by Igalia s Gwang Yoon Hwang. This work improves performance by not stalling other web engine features while compositing. Earlier this year we contributed fixes to make the threaded compositor work with the web inspector and fixed elements, helping with the goal of enabling it by default for this release. Wayland was also lacking an accelerated compositing implementation. There was a patch to add a nested Wayland compositor to the UIProcess, with the WebProcesses connecting to it as Wayland clients to share the final rendering so that it can be shown to screen. It was not ready though and there were questions as to whether that was the way to go and alternative proposals were floating around on how to best implement it. At last year s hackfest we had discussions about what the best path for that would be where collaborans Emanuele Aina and Daniel Stone (proxied by Emanuele) contributed quite a bit on figuring out how to implement it in a way that was both efficient and platform agnostic. We later picked up the old patchset, rebased on the then-current master and made it run efficiently as proof of concept for the Apertis project on an i.MX6 board. This was done using the fancy GL support that landed in GTK+ in the meantime, with some API additions and shortcuts to sidestep performance issues. The work was sponsored by Robert Bosch Car Multimedia. Igalia managed to improve and land a very well designed patch that implements the nested compositor, though it was still not as efficient as it could be, as it was using glReadPixels to get the final rendering of the page to the GTK+ widget through cairo. I have improved that code by ensuring we do not waste memory when using HiDPI. As part of our proof of concept investigation, we got this WebGL car visualizer running quite well on our sabrelite imx6 boards. Some of it went into the upstream patches or proposals mentioned below, but we have a bunch of potential improvements still in store that we hope to turn into upstreamable patches and advance during next week s hackfest. One of the improvements that already landed was an alternate code path that leverages GTK+ s recent GL super powers to render using gdk_cairo_draw_from_gl(), avoiding the expensive copying of pixels from the GPU to the CPU and making it go faster. That improvement exposed a weird bug in GTK+ that causes a black patch to appear when shrinking the window, which I have a tentative fix for. We originally proposed to add a new gdk_cairo_draw_from_egl() to use an EGLImage instead of a GL texture or renderbuffer. On our proof of concept we noticed it is even more efficient than the texturing currently used by GTK+, and could give us even better performance for WebKitGTK+. Emanuele Bassi thinks it might be better to add EGLImage as another code branch inside from_gl() though, so we will look into that. Another very interesting igalian addition to this release is support for the MemoryPressureHandler even on systems with no cgroups set up. The memory pressure handler is a WebKit feature which flushes caches and frees resources that are not being used when the operating system notifies it memory is scarce. We worked with the Raspberry Pi Foundation to add support for that feature to the Raspberry Pi browser and contributed it upstream back in 2014, when Collabora was trying to squeeze as much as possible from the hardware. We had to add a cgroups setup to wrap Epiphany in, back then, so that it would actually benefit from the feature. With this improvement, it will benefit even without the custom cgroups setups as well, by having the UIProcess monitor memory usage and notify each WebProcess when memory is tight. Some of these improvements were achieved by developers getting together at the Web Engines Hackfest last year and laying out the ground work or ideas that ended up in the code base. I look forward to another great few days of hackfest next week! See you there o/

20 September 2016

Vincent Sanders: If I see an ending, I can work backward.

Now while I am sure Arthur Miller was referring to writing a play when he said those words they have an oddly appropriate resonance for my topic.

In the early nineties Lou Montulli applied the idea of magic cookies to HTTP to make the web stateful, I imagine he had no idea of the issues he was going to introduce for the future. Like most of the web technology it was a solution to an immediate problem which it has never been possible to subsequently improve.

Chocolate chip cookie are much tastier than HTTP cookiesThe HTTP cookie is simply a way for a website to identify a connecting browser session so that state can be kept between retrieving pages. Due to shortcomings in the design of cookies and implementation details in browsers this has lead to a selection of unwanted side effects. The specific issue that I am talking about here is the supercookie where the super prefix in this context has similar connotations as to when applied to the word villain.

Whenever the browser requests a resource (web page, image, etc.) the server may return a cookie along with the resource that your browser remembers. The cookie has a domain name associated with it and when your browser requests additional resources if the cookie domain matches the requested resources domain name the cookie is sent along with the request.

As an example the first time you visit a page on www.example.foo.invalid you might receive a cookie with the domain example.foo.invalid so next time you visit a page on www.example.foo.invalid your browser will send the cookie along. Indeed it will also send it along for any page on another.example.foo.invalid

A supercookies is simply one where instead of being limited to one sub-domain (example.foo.invalid) the cookie is set for a top level domain (foo.invalid) so visiting any such domain (I used the invalid name in my examples but one could substitute com or co.uk) your web browser gives out the cookie. Hackers would love to be able to set up such cookies and potentially control and hijack many sites at a time.

This problem was noted early on and browsers were not allowed to set cookie domains with fewer than two parts so example.invalid or example.com were allowed but invalid or com on their own were not. This works fine for top level domains like .com, .org and .mil but not for countries where the domain registrar had rules about second levels like the uk domain (uk domains must have a second level like .co.uk).

 NetSurf cookie manager showing a supercookieThere is no way to generate the correct set of top level domains with an algorithm so a database is required and is called the Public Suffix List (PSL). This database is a simple text formatted list with wildcard and inversion syntax and is at time of writing around 180Kb of text including comments which compresses down to 60Kb or so with deflate.

A few years ago with ICANN allowing the great expansion of top level domains the existing NetSurf supercookie handling was found to be wanting and I decided to implement a solution using the PSL. At this point in time the database was only 100Kb source or 40Kb compressed.

I started by looking at limited existing libraries. In fact only the regdom library was adequate but used 150Kb of heap to load the pre-processed list. This would have had the drawback of increasing NetSurf heap usage significantly (we still have users on 8Mb systems). Because of this and the need to run PHP script to generate the pre-processed input it was decided the library was not suitable.

Lacking other choices I came up with my own implementation which used a perl script to construct a tree of domains from the PSL in a static array with the label strings in a separate table. At the time my implementation added 70Kb of read only data which I thought reasonable and allowed for direct lookup of answers from the database.

This solution still required a pre-processing step to generate the C source code but perl is much more readily available, is a language already used by our tooling and we could always simply ship the generated file. As long as the generated file was updated at release time as we already do for our fallback SSL certificate root set this would be acceptable.

wireshark session shown NetSurf sending a co.uk supercookie to bbc.co.uk
I put the solution into NetSurf, was pleased no-one seemed to notice and moved on to other issues. Recently while fixing a completely unrelated issue in the display of session cookies in the management interface and I realised I had some test supercookies present in the display. After the initial "thats odd" I realised with horror there might be a deeper issue.

It quickly became evident the PSL generation was broken and had been for a long time, even worse somewhere along the line the "redundant" empty generated source file had been removed and the ancient fallback code path was all that had been used.

This issue had escalated somewhat from a trivial display problem. I took a moment to asses the situation a bit more broadly and came to the conclusion there were a number of interconnected causes, centered around the lack of automated testing, which could be solved by extracting the PSL handling into a "support" library.

NetSurf has several of these support libraries which could be used separately to the main browser project but are principally oriented towards it. These libraries are shipped and built in releases alongside the main browser codebase and mainly serve to make API more obvious and modular. In this case my main aim was to have the functionality segregated into a separate module which could be tested, updated and monitored directly by our CI system meaning the embarrassing failure I had found can never occur again.

Before creating my own library I did consider a library called libpsl had been created since I wrote my original implementation. Initially I was very interested in using this library given it managed a data representation within a mere 32Kb.

Unfortunately the library integrates a great deal of IDN and punycode handling which was not required in this use case. NetSurf already has to handle IDN and punycode translations and uses punycode encoded domain names internally only translating to unicode representations for display so duplicating this functionality using other libraries requires a great deal of resource above the raw data representation.

I put the library together based on the existing code generator Perl program and integrated the test set that comes along with the PSL. I was a little alarmed to discover that the PSL had almost doubled in size since the implementation was originally written and now the trivial test program of the library was weighing in at a hefty 120Kb.

This stemmed from two main causes:
  1. there were now many more domain label strings to be stored
  2. there now being many, many more nodes in the tree.
To address the first cause the length of the domain label strings was moved into the unused padding space within each tree node removing a byte from each domain label saving 6Kb. Next it occurred to me that while building the domain label string table that if the label to be added already existed as a substring within the table it could be elided.

The domain labels were sorted from longest to shortest and added in order searching for substring matches as the table was built this saved another 6Kb. I am sure there are ways to reduce this further I have missed (if you see them let me know!) but a 25% saving (47Kb to 35Kb) was a good start.

The second cause was a little harder to address. The structure representing nodes in the tree I started with was at first look reasonable.

struct pnode  
uint16_t label_index; /* index into string table of label */
uint16_t label_length; /* length of label */
uint16_t child_node_index; /* index of first child node */
uint16_t child_node_count; /* number of child nodes */
;

I examined the generated table and observed that the majority of nodes were leaf nodes (had no children) which makes sense given the type of data being represented. By allowing two types of node one for labels and a second for the child node information this would halve the node size in most cases and requiring only a modest change to the tree traversal code.

The only issue with this would be that a way to indicate a node has child information. It was realised that the domain labels can have a maximum length of 63 characters meaning their length can be represented in six bits so a uint16_t was excessive. The space was split into two uint8_t parts one for the length and one for a flag to indicate child data node followed.

union pnode  
struct
uint16_t index; /* index into string table of label */
uint8_t length; /* length of label */
uint8_t has_children; /* the next table entry is a child node */
label;
struct
uint16_t node_index; /* index of first child node */
uint16_t node_count; /* number of child nodes */
child;
;

static const union pnode pnodes[8580] =
/* root entry */
.label = 0, 0, 1 , .child = 2, 1553 ,
/* entries 2 to 1794 */
.label = 37, 2, 1 , .child = 1795, 6 ,

...

/* entries 8577 to 8578 */
.label = 31820, 6, 1 , .child = 8579, 1 ,
/* entry 8579 */
.label = 0, 1, 0 ,

;

This change reduced the node array size from 63Kb to 33Kb almost a 50% saving. I considered using bitfields to try and reduce the label length and has_children flag into a single byte but such packing will not reduce the length of a node below 32bits because it is unioned with the child structure.

A possibility of using the spare uint8_t derived by bitfield packing to store an additional label node in three other nodes was considered but added a great deal of complexity to node lookup and table construction for saving around 4Kb so was not incorporated.

With the changes incorporated the test program was a much more acceptable 75Kb reasonably close to the size of the compressed source but with the benefits of direct lookup. Integrating the libraries single API call into NetSurf was straightforward and resulted in correct operation when tested.

This episode just reminded me of the dangers of code that can fail silently. It exposed our users to a security problem that we thought had been addressed almost six years ago and squandered the limited resources of the project. Hopefully a lesson we will not have to learn again any time soon. If there is a positive to take away it is that the new implementation is more space efficient, automatically built and importantly tested

19 September 2016

Mike Gabriel: Rocrail changed License to some dodgy non-free non-License

The Background Story A year ago, or so, I took some time to search the internet for Free Software that can be used for controlling model railways via a computer. I was happy to find Rocrail [1] being one of only a few applications available on the market. And even more, I was very happy when I saw that it had been licensed under a Free Software license: GPL-3(+). A month ago, or so, I collected my old M rklin (Digital) stuff from my parents' place and started looking into it again after +15 years, together with my little son. Some weeks ago, I remembered Rocrail and thought... Hey, this software was GPLed code and absolutely suitable for uploading to Debian and/or Ubuntu. I searched for the Rocrail source code and figured out that it got hidden from the web some time in 2015 and that the license obviously has been changed to some non-free license (I could not figure out what license, though). This made me very sad! I thought I had found a piece of software that might be interesting for testing with my model railway. Whenever I stumble over some nice piece of Free Software that I plan to use (or even only play with), I upload this to Debian as one of the first steps. However, I highly attempt to stay away from non-free sofware, so Rocrail has become a no-option for me back in 2015. I should have moved on from here on... Instead... Proactively, I signed up with the Rocrail forum and asked the author(s) if they see any chance of re-licensing the Rocrail code under GPL (or any other FLOSS license) again [2]? When I encounter situations like this, I normally offer my expertise and help with such licensing stuff for free. My impression until here already was that something strange must have happened in the past, so that software developers choose GPL and later on stepped back from that decision and from then on have been hiding the source code from the web entirely. Going deeper... The Rocrail project's wiki states that anyone can request GitBlit access via the forum and obtain the source code via Git for local build purposes only. Nice! So, I asked for access to the project's Git repository, which I had been granted. Thanks for that. Trivial Source Code Investigation... So far so good. I investigated the source code (well, only the license meta stuff shipped with the source code...) and found that the main COPYING files (found at various locations in the source tree, containing a full version of the GPL-3 license) had been replaced by this text:
Copyright (c) 2002 Robert Jan Versluis, Rocrail.net
All rights reserved.
Commercial usage needs permission.
The replacement happened with these Git commits:
commit cfee35f3ae5973e97a3d4b178f20eb69a916203e
Author: Rob Versluis <r.j.versluis@rocrail.net>
Date:   Fri Jul 17 16:09:45 2015 +0200
    update copyrights
commit df399d9d4be05799d4ae27984746c8b600adb20b
Author: Rob Versluis <r.j.versluis@rocrail.net>
Date:   Wed Jul 8 14:49:12 2015 +0200
    update licence
commit 0daffa4b8d3dc13df95ef47e0bdd52e1c2c58443
Author: Rob Versluis <r.j.versluis@rocrail.net>
Date:   Wed Jul 8 10:17:13 2015 +0200
    update
Getting in touch again, still being really interested and wanting to help... As I consider such a non-license as really dangerous when distributing any sort of software, be it Free or non-free Software, I posted the below text on the Rocrail forum:
Hi Rob,
I just stumbled over this post [3] [link reference adapted for this
blog post), which probably is the one you have referred to above.
It seems that Rocrail contains features that require a key or such
for permanent activation.  Basically, this is allowed and possible
even with the GPL-3+ (although Free Software activists will  not
appreciate that). As the GPL states that people can share the source
code, programmers can  easily deactivate license key checks (and
such) in the code and re-distribute that patchset as they  like.
Furthermore, the current COPYING file is really non-protective at
all. It does not really protect   you as copyright holder of the
code. Meaning, if people crash their trains with your software, you  
could actually be legally prosecuted for that. In theory. Or in the
U.S. ( ;-) ). Main reason for  having a long long license text is to
protect you as the author in case your software causes t trouble to
other people. You do not have any warranty disclaimer in your COPYING
file or elsewhere. Really not a good idea.
In that referenced post above, someone also writes about the nuisance
of license discussions in  this forum. I have seen various cases
where people produced software and did not really care for 
licensing. Some ended with a letter from a lawyer, some with some BIG
company using their code  under their copyright holdership and their
own commercial licensing scheme. This is not paranoia,  this is what
happens in the Free Software world from time to time.
A model that might be much more appropriate (and more protective to
you as the author), maybe, is a  dual release scheme for the code. A
possible approach could be to split Rocrail into two editions:  
Community Edition and Professional/Commercial Edition. The Community
Edition must be licensed in a  way that it allows re-using the code
in a closed-source, non-free version of Rocrail (e.g.   MIT/Expat
License or Apache2.0 License). Thus, the code base belonging to the
community edition  would be licensed, say..., as Apache-2.0 and for
the extra features in the Commercial Edition, you  may use any
non-free license you want (but please not that COPYING file you have
now, it really  does not protect your copyright holdership).
The reason for releasing (a reduced set of features of a) software as
Free Software is to extend  the user base. The honey jar effect, as
practise by many huge FLOSS projects (e.g. Owncloud,  GitLab, etc.).
If people could install Rocrail from the Debian / Ubuntu archives
directly, I am  sure that the user base of Rocrail will increase.
There may also be developers popping up showing  an interest in
Rocrail (e.g. like me). However, I know many FLOSS developers (e.g.
like me) that  won't waste their free time on working for a non-free
piece of software (without being paid).
If you follow (or want to follow) a business model with Rocrail, then
keep some interesting  features in the Commercial Edition and don't
ship that source code. People with deep interest may  opt for that.
Furthermore, another option could be dual licensing the code. As the
copyright holder of Rocrail  you are free to juggle with licenses and
apply any license to a release you want. For example, this  can be
interesing for a free-again Rocrail being shipped via Apple's iStore. 
Last but not least, as you ship the complete source code with all
previous changes as a Git project  to those who request GitBlit
access, it is possible to obtain all earlier versions of Rocrail. In 
the mail I received with my GitBlit credentials, there was some text
that  prohibits publishing the  code. Fine. But: (in theory) it is
not forbidden to share the code with a friend, for local usage.  This
friend finds the COPYING file, frowns and rewinds back to 2015 where
the license was still  GPL-3+. GPL-3+ code can be shared with anyone
and also published, so this friend could upload the  2015-version of
Rocrail to Github or such and start to work on a free fork. You also
may not want  this.
Thanks for working on this piece of software! It is highly
interesing, and I am still sad, that it  does not come with a free
license anymore. I won't continue this discussion and move on, unless
you  are interested in any of the above information and ask for more
expertise. Ping me here or directly  via mail, if needed. If the
expertise leads to parts of Rocrail becoming Free Software again, the 
expertise is offered free of charge ;-).
light+love
Mike
Wow, the first time I got moderated somewhere... What an experience! This experience now was really new. My post got immediately removed from the forum by the main author of Rocrail (with the forum's moderator's hat on). The new experience was: I got really angry when I discovererd having been moderated. Wow! Really a powerful emotion. No harassment in my words, no secrets disclosed, and still... my free speech got suppressed by someone. That feels intense! And it only occurred in the virtual realm, not face to face. Wow!!! I did not expect such intensity... The reason for wiping my post without any other communication was given as below and quite a statement to frown upon (this post has also been "moderately" removed from the forum thread [2] a bit later today):
Mike,
I think its not a good idea to point out a way to get the sources back to the GPL periode.
Therefore I deleted your posting.
(The phpBB forum software also allows moderators to edit posts, so the critical passage could have been removed instead, but immediately wiping the full message, well...). Also, just wiping my post and not replying otherwise with some apology to suppress my words, really is a no-go. And the reason for wiping the rest of the text... Any Git user can easily figure out how to get a FLOSS version of Rocrail and continue to work on that from then on. Really. Now the political part of this blog post... Fortunately, I still live in an area of the world where the right of free speech is still present. I found out: I really don't like being moderated!!! Esp. if what I share / propose is really noooo secret at all. Anyone who knows how to use Git can come to the same conclusion as I have come to this morning. [Off-topic, not at all related to Rocrail: The last votes here in Germany indicate that some really stupid folks here yearn for another this time highly idiotic wind of change, where free speech may end up as a precious good.] To other (Debian) Package Maintainers and Railroad Enthusiasts... With this blog post I probably close the last option for Rocrail going FLOSS again. Personally, I think that gate was already closed before I got in touch. Now really moving on... Probably the best approach for my new train conductor hobby (as already recommended by the woman at my side some weeks back) is to leave the laptop lid closed when switching on the train control units. I should have listened to her much earlier. I have finally removed the Rocrail source code from my computer again without building and testing the application. I neither have shared the source code with anyone. Neither have I shared the Git URL with anyone. I really think that FLOSS enthusiasts should stay away from this software for now. For my part, I have lost my interest in this completely... References light+love,
Mike

18 September 2016

Norbert Preining: Fixing packages for broken Gtk3

As mentioned on sunweaver s blog Debian s GTK-3+ v3.21 breaks Debian MATE 1.14, Gtk3 is breaking apps all around. But not only Mate, probably many other apps are broken, too, in particular Nemo (the file manager of Cinnamon desktop) has redraw issues (bug 836908), and regular crashes (bug 835043). gtk-breakage I have prepared packages for mate-terminal and nemo built from the most recent git sources. The new mate-terminal now does not crash anymore on profile changes (bug 835188), and the nemo redraw issues are gone. Unfortunately, the other crashes of nemo are still there. The apt-gettable repository with sources and amd64 binaries are here:
deb http://www.preining.info/debian/ gtk3fixes main
deb-src http://www.preining.info/debian/ gtk3fixes main
and are signed with my usual GPG key. Last but not least, I quote from sunweaver s blog: Questions
  1. Isn t GTK-3+ a shared library? This one was rhetorical Yes, it is.
  2. One that breaks other application with every point release? Well, unfortunately, as experience over the past years has shown: Yes, this has happened several times, so far and it happened again.
  3. Why is it that GTK-3+ uploads appear in Debian without going through a proper transition? This question is not rhetorical. If someone has an answer, please enlighten me.
(end of quote) <rant>
My personal answer to this is: Gtk is strongly related to Gnome, Gnome is strongly related to SystemD, all this is pushed onto Debian users in the usual way of we don t care for breaking non-XXX apps (for XXX in Gnome, SystemD). It is very sad to see this recklessness taking more and more space all over Debian.
</rant> I finish with another quote from sunweaver s blog:
already scared of the 3.22 GTK+ release, luckily the last development release of the GTK+ 3-series

17 September 2016

Jonas Meurer: data recovery

Data recovery with ddrescue, testdisk and sleuthkit From time to time I need to recover data from disks. Reasons can be broken flash/hard disks as well as accidently deleted files. Fortunately, this doesn't happen to often, which on the downside means that I usually don't remember the details about best practice. Now that a good friend asked me to recover very important data from a broken flash disk, I take the opportunity to write down what I did and hopefully don't need to read the same docs again next time :) Disclaimer: I didn't take the time to read through full documentation. This is rather a brief summary of the best practice to my knowledge, not a sophisticated and detailed explanation of data recovery techniques. Create image with ddrescue First and most secure rule for recovery tasks: don't work on the original, use a copied image instead. This way you can do, whatever you want without risking further data loss. The perfect tool for this is GNU ddrescue. Contrary to dd, it doesn't reiterate over a broken sector with I/O errors again and again while copying. Instead, it remembers the broken sector for later and goes on to the next sector first. That way, all sectors that can be read without errors are copied first. This is particularly important as every extra attempt to read a broken sector can further damage the source device, causing even more data loss. In Debian, ddrescue is available in the gddrescue package:
apt-get install gddrescue
Copying the raw disk content to an image with ddrescue is as easy as:
ddrescue /dev/disk disk-backup.img disk.log
Giving a logfile as third argument has the great advantage that you can interupt ddrescue at any time and continue the copy process later, possibly with different options. In case of very large disks where only the first part was in use, it might be useful to start with copying the beginning only:
ddrescue -i0 -s20MiB /dev/disk disk-backup.img disk.log
In case of errors after the first run, you should start ddrescue again with direct read access (-d) and tell it to try again bad sectors three times (-r3):
ddrescue -d -r3 /dev/disk disk-backup.img disk.log
If some sectors are still missing afterwards, it might help to run ddrescue with infinite retries for some time (e.g. one night):
ddrescue -d -r-1  /dev/disk disk-backup.img disk.log

Inspect the image Now that you have an image of the raw disk, you can take a first look at what it contains. If ddrescue was able to recover all sectors, chances are high that no further magic is required and all data is there. If the raw disk (used to) contain a partition table, take a first look with mmls from sleuthkit:
mmls disk-backup.img
In case of a intact partition table, you can try to create device maps with kpartx after setting up a loop device for the image file:
losetup /dev/loop0 disk-backup.img
kpartx -a /dev/loop0
If kpartx finds partitions, they will be made available at /dev/mapper/loop0p1, /dev/mapper/loop0p2 and so on. Search for filesystems on the partitions with fsstat from sleuthkit on the partition device map:
fsstat /dev/mapper/loop0p1
Or directly on the image file with the offset discovered by mmls earlier. This also might work in case of
fsstat -o 8064 disk-backup.img
The offset obviously is not needed if the image contains a partition dump (without partition table):
fsstat disk-backup.img
In case that a filesystem if found, simply try to mount it:
mount -t <fstype> -o ro /dev/mapper/loop0p1 /mnt
or
losetup -o 8064 /dev/loop1 disk-backup.img
mount -t <fstype> -o ro /dev/loop1 /mnt

Recover partition table If the partition table is broken, try to recover it with testdisk. But first, create a second copy of the image, as you will alter it now:
ddrescue disk-backup.img disk-backup2.img
testdisk disk-backup2.img
In testdisk, select a media (e.g. Disk disk-backup2.img) and proceed, then select the partition table type (usually Intel or EFI GPT) and analyze -> quick search. If partitions are found, select one or more and write the partition structure to disk.

Recover files Finally, let's try to recover the actual files from the image. testdisk If the partition table recovery was sucessfull, try to undelete files from within testdisk. Go back to the main menu and select advanced -> undelete. photorec Another option is to use the photorec tool that comes with testdisk. It searches the image for known file structures directly, ignoring possible filesystems:
photorec sdb2.img
You have to select either a particular partition or the whole disk, a file system (ext2/ext3 vs. other) and a destination for recovered files. Last time, photorec was my last resort as the fat32 filesystem was so damaged that testdisk detected only an empty filesystem. sleuthkit sleuthkit also ships with tools to undelete files. I tried fls and icat. fls searches for and lists files and directories in the image, searching for parts of the former filesystem. icat copies the files by their inode numer. Last time I tried, fls and icat didn't recover any new files compared to photorec. Still, for the sake of completeness, I document what I did. First, I invoked fls in order to search for files:
fls -f fat32 -o 8064 -pr disk-backup.img
Then, I tried to backup one particular file from the list:
icat -f fat32 -o 8064 <INODE>
Finally, I used the recoup.pl script from Dave Henk in order to batch-recover all discovered files:
wget http://davehenk.googlepages.com/recoup.pl
chmod +x recoup.pl
vim recoup.pl
[...]
my $fullpath="~/recovery/sleuthkit/";
my $FLS="/usr/bin/fls";
my @FLS_OPT=("-f","fat32","-o","8064","-pr","-m $fullpath","-s 0");
my $FLS_IMG="~/recovery/disk-image.img";
my $ICAT_LOG="~/recovery/icat.log";
my $ICAT="/usr/bin/icat";
my @ICAT_OPT=("-f","fat32","-o","8064");
[...]
Further down, the double quotes around $fullfile needed to be replaced by single quotes (at least in my case, as $fullfile contained a subdir called '$OrphanFiles'):
system("$ICAT @ICAT_OPT $ICAT_IMG $inode > \'$fullfile\' 2>> $ICAT_LOG") if ($inode != 0);
That's it for now. Feel free to comment with suggestions on how to further improve the process of recovering data from broken disks.

16 September 2016

Dirk Eddelbuettel: anytime 0.0.2: Added functionality

anytime arrived on CRAN via release 0.0.1 a good two days ago. anytime aims to convert anything in integer, numeric, character, factor, ordered, ... format to POSIXct (or Date) objects. This new release 0.0.2 adds two new functions to gather conversion formats -- and set new ones. It also fixed a minor build bug, and robustifies a conversion which was seen to be not quite right under some time zones. The NEWS file summarises the release:
Changes in Rcpp version 0.0.2 (2016-09-15)
  • Refactored to use a simple class wrapped around two vector with (string) formats and locales; this allow for adding formats; also adds accessor for formats (#4, closes #1 and #3).
  • New function addFormats() and getFormats().
  • Relaxed one tests which showed problems on some platforms.
  • Added as.POSIXlt() step to anydate() ensuring all POSIXlt components are set (#6 fixing #5).
Courtesy of CRANberries, there is a comparison to the previous release. More information is on the anytime page. For questions or comments use the issue tracker off the GitHub repo.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

15 September 2016

Craig Sanders: Frankenwheezy! Keeping wheezy alive on a container host running libc6 2.24

It s Alive! The day before yesterday (at Infoxchange, a non-profit whose mission is Technology for Social Justice , where I do a few days/week of volunteer systems & dev work), I had to build a docker container based on an ancient wheezy image. It built fine, and I got on with working with it. Yesterday, I tried to get it built on my docker machine here at home so I could keep working on it, but the damn thing just wouldn t build. At first I thought it was something to do with networking, because running curl in the Dockerfile was the point where it was crashing but it turned out that many programs would segfault e.g. it couldn t run bash, but sh (dash) was OK. I also tried running a squeeze image, and that had the same problem. A jessie image worked fine (but the important legacy app we need wheezy for doesn t yet run in jessie). After a fair bit of investigation, it turned out that the only significant difference between my workstation at IX and my docker machine at home was that I d upgraded my home machines to libc6 2.24-2 a few days ago, whereas my IX workstation (also running sid) was still on libc6 2.23. Anyway, the point of all this is that if anyone else needs to run a wheezy on a docker host running libc6 2.24 (which will be quite common soon enough), you have to upgrade libc6 and related packages (and any -dev packages, including libc6-dev, you might need in your container that are dependant on the specific version of libc6). In my case, I was using docker but I expect that other container systems will have the same problem and the same solution: install libc6 from jessie into wheezy. Also, I haven t actually tested installing jessie s libc6 on squeeze if it works, I expect it ll require a lot of extra stuff to be installed too. I built a new frankenwheezy image that had libc6 2.19-18+deb8u4 from jessie. To build it, I had to use a system which hadn t already been upgraded to libc6 2.24. I had already upgraded libc6 on all the machines on my home network. Fortunately, I still had my old VM that I created when I first started experimenting with docker crazily, it was a VM with two ZFS ZVOLs, a small /dev/vda OS/boot disk, and a larger /dev/vdb mounted as /var/lib/docker. The crazy part is that /dev/vdb was formatted as btrfs (mostly because it seemed a much better choice than aufs). Disk performance wasn t great, but it was OK and it worked. Docker has native support for ZFS, so that s what I m using on my real hardware. I started with the base wheezy image we re using and created a Dockerfile etc to update it. First, I added deb lines to the /etc/apt/sources.list for my local jessie and jessie-updates mirror, then I added the following line to /etc/apt/apt.conf:
APT::Default-Release "wheezy";
Without that, any other apt-get installs in the Dockerfile will install from jesssie rather than wheezy, which will almost certainly break the legacy app. I forgot to do it the first time, and had to waste another 10 minutes or so building the app s container again. I then installed the following:
apt-get -t jessie install libc6 locales libc6-dev krb5-multidev comerr-dev zlib1g-dev libssl-dev libpq-dev
To minimise the risk of incompatible updates, it s best to install the bare minimum of jessie packages required to get your app running. The only reason I needed to install all of those -dev packages was because we needed libpq-dev, which pulled in all the rest. If your app doesn t need to talk to postgresql, you can skip them. In fact, I probably should try to build it again without them I added them after the first build failed but before I remembered to set Apt::Default::Release (OTOH, it s working OK now and we re probably better off with libssl-dev from jessie anyway). Once it built successfully, I exported the image to a tar file, copied it back to my real Docker machine (co-incidentally, the same machine with the docker VM installed) and imported it into docker there and tested it to make sure it didn t have the same segfault issues that the original wheezy image did. No problem, it worked perfectly. That worked, so I edited the FROM line in the Dockerfile for our wheezy app to use frankenwheezy and ran make build. It built, passed tests, deployed and is running. Now I can continue working on the feature I m adding to it, but I expect there ll be a few more yaks to shave before I m finished. When I finish what I m currently working on, I ll take a look at what needs to be done to get this app running on jessie. It s on the TODO list at work, but everyone else is too busy a perfect job for an unpaid volunteer. Wheezy s getting too old to keep using, and this frankenwheezy needs to float away on an iceberg. Frankenwheezy! Keeping wheezy alive on a container host running libc6 2.24 is a post from: Errata

13 September 2016

John Goerzen: Two Boys, An Airplane, Plus Hundreds of Old Computers

Was there anything you didn t like about our trip? Jacob s answer: That we had to leave so soon! That s always a good sign. When I first heard about the Vintage Computer Festival Midwest, I almost immediately got the notion that I wanted to go. Besides the TRS-80 CoCo II up in my attic, I also have fond memories of an old IBM PC with CGA monitor, a 25MHz 486, an Alpha also in my attic, and a lot of other computers along the way. I didn t really think my boys would be interested. But I mentioned it to them, and they just lit up. They remembered the Youtube videos I d shown them of old line printers and punch card readers, and thought it would be great fun. I thought it could be a great educational experience for them too and it was. It also turned into a trip that combined being a proud dad with so many of my other interests. Quite a fun time. IMG_20160911_061456 (Jacob modeling his new t-shirt) Captain Jacob Chicago being not all that close to Kansas, I planned to fly us there. If you re flying yourself, solid flight planning is always important. I had already planned out my flight using electronic tools, but I always carry paper maps with me in the cockpit for backup. I got them out and the boys and I planned out the flight the old-fashioned way. Here s Oliver using a scale ruler (with markings for miles corresponding to the scale of the map) and Jacob doing calculating for us. We measured the entire route and came to within one mile of the computer s calculation for each segment those boys are precise! 20160904_175519 We figured out how much fuel we d use, where we d make fuel stops, etc. The day of our flight, we made it as far as Davenport, Iowa when a chance of bad weather en route to Chicago convinced me to land there and drive the rest of the way. The boys saw that as part of the exciting adventure! Jacob is always interested in maps, and had kept wanting to use my map whenever we flew. So I dug an old Android tablet out of the attic, put Avare on it (which has aviation maps), and let him use that. He was always checking it while flying, sometimes saying this over his headset: DING. Attention all passengers, this is Captain Jacob speaking. We are now 45 miles from St. Joseph. Our altitude is 6514 feet. Our speed is 115 knots. We will be on the ground shortly. Thank you. DING Here he is at the Davenport airport, still busy looking at his maps: IMG_20160909_183813 Every little airport we stopped at featured adults smiling at the boys. People enjoyed watching a dad and his kids flying somewhere together. Oliver kept busy too. He loves to help me on my pre-flight inspections. He will report every little thing to me a scratch, a fleck of paint missing on a wheel cover, etc. He takes it seriously. Both boys love to help get the plane ready or put it away. The Computers Jacob quickly gravitated towards a few interesting things. He sat for about half an hour watching this old Commodore plotter do its thing (click for video): VID_20160910_142044 His other favorite thing was the phones. Several people had brought complete analog PBXs with them. They used them to demonstrate various old phone-related hardware; one had several BBSs running with actual modems, another had old answering machines and home-security devices. Jacob learned a lot about phones, including how to operate a rotary-dial phone, which he d never used before! IMG_20160910_151431 Oliver was drawn more to the old computers. He was fascinated by the IBM PC XT, which I explained was just about like a model I used to get to use sometimes. They learned about floppy disks and how computers store information. IMG_20160910_195145 He hadn t used joysticks much, and found Pong ( this is a soccer game! ) interesting. Somebody has also replaced the guts of a TRS-80 with a Raspberry Pi running a SNES emulator. This had thoroughly confused me for a little while, and excited Oliver. Jacob enjoyed an old TRS-80, which, through a modern Ethernet interface and a little computation help in AWS, provided an interface to Wikipedia. Jacob figured out the text-mode interface quickly. Here he is reading up on trains. IMG_20160910_140524 I had no idea that Commodore made a lot of adding machines and calculators before they got into the home computer business. There was a vast table with that older Commodore hardware, too much to get on a single photo. But some of the adding machines had their covers off, so the boys got to see all the little gears and wheels and learn how an adding machine can do its printing. IMG_20160910_145911 And then we get to my favorite: the big iron. Here is a VAX a working VAX. When you have a computer that huge, it s easier for the kids to understand just what something is. IMG_20160910_125451 When we encountered the table from the Glenside Color Computer Club, featuring the good old CoCo IIs like what I used as a kid (and have up in my attic), I pointed out to the boys that we have a computer just like this that can do these things and they responded wow! I think they are eager to try out floppy disks and disk BASIC now. Some of my favorites were the old Unix systems, which are a direct ancestor to what I ve been working with for decades now. Here s AT&T System V release 3 running on its original hardware: IMG_20160910_144923 And there were a couple of Sun workstations there, making me nostalgic for my college days. If memory serves, this one is actually running on m68k in the pre-Sparc days: IMG_20160910_153418 Returning home After all the excitement of the weekend, both boys zonked out for awhile on the flight back home. Here s Jacob, sleeping with his maps still up. IMG_20160911_132952 As we were nearly home, we hit a pocket of turbulence, the kind that feels as if the plane is dropping a bit (it s perfectly normal and safe; you ve probably felt that on commercial flights too). I was a bit concerned about Oliver; he is known to get motion sick in cars (and even planes sometimes). But what did I hear from Oliver? Whee! That was fun! It felt like a roller coaster! Do it again, dad!

Dirk Eddelbuettel: anytime 0.0.1: New package for 'anything' to POSIXct (or Date)

anytime just arrived on CRAN as a very first release 0.0.1. So why (yet another) package dealing with dates and times? R excels at computing with dates, and times. By using typed representation we not only get all that functionality but also of the added safety stemming from proper representation. But there is a small nuisance cost: How often have we each told as.POSIXct() that the origin is epoch '1970-01-01'? Do we have to say it a million more times? Similarly, when parsing dates that are in some recogniseable form of the YYYYMMDD format, do we really have to manually convert from integer or numeric or factor or ordered to character first? Having one of several common separators and/or date / time month forms (YYYY-MM-DD, YYYY/MM/DD, YYYYMMDD, YYYY-mon-DD and so on, with or without times, with or without textual months and so on), do we really need a format string? anytime() aims to help as a small general purpose converter returning a proper POSIXct (or Date) object nomatter the input (provided it was somewhat parseable), relying on Boost date_time for the (efficient, performant) conversion. See some examples on the anytime page or the GitHub README.md, or in the screenshot below. And then just give it try! anytime examples For questions or comments use the issue tracker off the GitHub repo.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

12 September 2016

Steve Kemp: If your code accepts URIs as input..

There are many online sites that accept reading input from remote locations. For example a site might try to extract all the text from a webpage, or show you the HTTP-headers a given server sends back in response to a request. If you run such a site you must make sure you validate the schema you're given - also remembering to do that if you're sent any HTTP-redirects.
Really the issue here is a confusion between URL & URI.
The only time I ever communicated with Aaron Swartz was unfortunately after his death, because I didn't make the connection. I randomly stumbled upon the html2text software he put together, which had an online demo containing a form for entering a location. I tried the obvious input:
file:///etc/passwd
The software was vulnerable, read the file, and showed it to me. The site gives errors on all inputs now, so it cannot be used to demonstrate the problem, but on Friday I saw another site on Hacker News with the very same input-issue, and it reminded me that there's a very real class of security problems here. The site in question was http://fuckyeahmarkdown.com/ and allows you to enter a URL to convert to markdown - I found this via the hacker news submission. The following link shows the contents of /etc/hosts, and demonstrates the problem: http://fuckyeahmarkdown.example.com/go/?u=file:///etc/hosts&read=1&preview=1&showframe=0&submit=go The output looked like this:
..
127.0.0.1 localhost
255.255.255.255 broadcasthost
::1 localhost
fe80::1%lo0 localhost
127.0.0.1 stage
127.0.0.1 files
127.0.0.1 brettt..
..
In the actual output of '/etc/passwd' all newlines had been stripped. (Which I now recognize as being an artifact of the markdown processing.) UPDATE: The problem is fixed now.

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