Search Results: "cts"

9 August 2017

Junichi Uekawa: reading up on rapidjson.

reading up on rapidjson. I was reading the docs for rapidjson performance and I like that source buffer is destroyed for performance. I was wrinting JSON parser myself and performance bottleneck seems to be copying and constructing objects.

7 August 2017

Raphaël Hertzog: My Free Software Activities in July 2017

My monthly report covers a large part of what I have been doing in the free software world. I write it for my donors (thanks to them!) but also for the wider Debian community because it can give ideas to newcomers and it s one of the best ways to find volunteers to work with me on projects that matter to me. Debian LTS This month I was allocated 12 hours but I only managed to work for 7 hours (due to vacation and unanticipated customer work). I gave back the remaining hours to the pool as I didn t want to carry them over for August which will be also short due to vacation (BTW I m not attending Debconf). I spent my 7 hours doing CVE triaging during the week where I was in charge of the LTS frontdesk (I committed 22 updates to the security tracker). I did publish DLA-1010-1 on vorbis-tools but the package update had been prepared by Petter Reinholdtsen. Misc Debian work zim. I published an updated package in experimental (0.67~rc2-2) with the upstream bug fixes on the current release candidate. The final version has been released during my vacation and I will soon upload it to unstable. Debian Handbook. I worked with Petter Reinholdtsen to finalize the paperback version of the Norwegian translation of the Debian Administrator s Handbook (still covering Debian 8 Jessie). It s now available. Bug reports. I filed a few bugs related to my Kali work. #868678: autopkgtest s setup-testbed script is not friendly to derivatives. #868749: aideinit fails with syntax errors when /etc/debian_version contains spaces. debian-installer. I submitted a few d-i patches that I prepared for a customer who had some specific needs (using the hd-media image to boot the installer from an ISO stored in an LVM logical volume). I made changes to debian-installer-utils (#868848), debian-installer (#868852), and iso-scan (#868859, #868900). Thanks See you next month for a new summary of my activities.

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5 August 2017

Bits from Debian: Google Platinum Sponsor of DebConf17

Googlelogo We are very pleased to announce that Google has committed support to DebConf17 as a Platinum sponsor. Google is one of the largest technology companies in the world, providing a wide range of Internet-related services and products as online advertising technologies, search, cloud computing, software, and hardware. Google has been supporting Debian by sponsoring DebConf since more than ten years, and at gold level since DebConf12. With this additional commitment as Platinum Sponsor for DebConf17, Google contributes to make possible our annual conference, and directly supports the progress of Debian and Free Software helping to strengthen the community that continues to collaborate on Debian projects throughout the rest of the year. Thank you very much Google, for your support of DebConf17! DebConf17 is starting! Many Debian contributors are already taking advantage of DebCamp and the Open Day to work individually or in groups developing and improving Debian. DebConf17 will officially start on August 6, 2017. Visit the DebConf17 website at https://debconf17.debconf.org to know the schedule, live streaming and other details.

Lars Wirzenius: Enabling TRIM/DISCARD on Debian, ext4, luks, and lvm

I realised recently that my laptop isn't set up to send TRIM or DISCARD commands to its SSD. That means the SSD firmware has a harder time doing garbage collection (see whe linked Wikipedia page for more details.) After some searching, I found two articles by Christopher Smart: one, update. Those, plus some addition reading of documentation, and a little experimentation, allowed me to do this. Since the information is a bit scattered, here's the details, for Debian stretch, as much for my own memory as to make sure this is collected into one place. Note that it seems to be a possible information leak to TRIM encryped devices. I don't know the details, but if that bothers you, don't do it. I don't know of any harmful effects for enabling TRIM for everything, except the crypto bit above, so I wonder if it wouldn't make sense for the Debian installer to do this by default.

Daniel Silverstone: USB Device Stacks, on RTFM, part 2

Previously we talked about all the different kinds of descriptors which USB devices use to communicate their capability. This is important stuff because to write any useful USB device firmware we need to be able to determine how to populate our descriptors. However, having that data on the device is entirely worthless without an understanding of how it gets from the device to the host so that it can be acted upon. To understand that, let's look at the USB wire protocol.
Note, I'll again be talking mostly about USB2.0 low- and full-speed. I believe that high speed is approximately the same but with faster wires, except not quite that simple.

Down to the wire I don't intend to talk about the actual electrical signalling, though it's not un-reasonable for you to know that USB is a pair of wires forming a differentially signalled bidirectional serial communications link. The host is responsible for managing all the framing and timing on the link, and for formatting the communications into packets. There are a number of packet types which can appear on the USB link:
Packet type Purpose
Token Packet When the host wishes to send a message to the Control endpoint to configure the device, read data IN, or write data OUT, it uses this to start the transaction.
Data(0/1) Packet Following a Setup, In, or Out token, a Data packet is a transfer of data (in either direction). The 0 and 1 alternate to provide a measure of confidence against lost packets.
Handshake Packet Following a data packet of some kind, the other end may ACK the packet (all was well), NAK the packet (report that the device cannot, temporarily, send/receive data, or that an interrupt endpoint isn't triggered), or STALL the bus in which case the host needs to intervene.
Start of Frame Every 1ms (full-speed) the host will send a SOF packet which carries a frame number. This can be used to help keep time on very simple devices. It also divides the bus into frames within which bandwidth is allocated.
As an example, when the host wishes to perform a control transfer, the following packets are transacted in turn:
  1. Setup Token - The host addresses the device and endpoint (OUT0)
  2. Data0 Packet - The host transmits a GET_DESCRIPTOR for the device descriptor
  3. Ack Packet - The device acknowledges receipt of the request
This marks the end of the first transaction. The device decodes the GET_DESCRIPTOR request and prepares the device descriptor for transmission. The transmission occurs as the next transaction on the bus. In this example, we're assuming 8 byte maximum transmission sizes, for illustrative purposes.
  1. In Token - The host addresses the device and endpoint (IN0)
  2. Data1 Packet - The device transmits the first 8 bytes of the descriptor
  3. Ack Packet - The host acknowledges the data packet
  4. In Token - The host addresses the device and endpoint (IN0)
  5. Data0 Packet - The device transmits the remaining 4 bytes of the descriptor (padded)
  6. Ack Packet - The host acknowledges the data packet
The second transaction is now complete, and the host has all the data it needs to proceed. Finally a status transaction occurs in which:
  1. Out Token - The host addresses the device and endpoint (OUT0)
  2. Data1 Packet - The host transmits a 0 byte data packet to indicate successful completion
  3. Ack Packet - The device acknowledges the completion, indicating its own satisfaction
And thus ends the full control transaction in which the host retrieves the device descriptor. From a high level, we need only consider the activity which occurs at the point of the acknowledgement packets. In the above example:
  1. On the first ACK the device prepares IN0 to transmit the descriptor, readying whatever low level device stack there is with a pointer to the descriptor and its length in bytes.
  2. On the second ACK the low levels are still thinking.
  3. On the third ACK the transmission from IN0 is complete and the endpoint no longer expects to transfer data.
  4. On the fourth ACK the control transaction is entirely complete.

Thinking at the low levels of the control interface Before we can build a high level USB stack, we need to consider the activity which might occur at the lower levels. At the low levels, particularly of the device control interface, work has to be done at each and every packet. The hardware likely deals with the token packet for us, leaving the data packets for us to process, and the resultant handshake packets will be likely handled by the hardware in response to our processing the data packets. Since every control transaction is initiated by a setup token, let's look at the setup requests which can come our way...
Setup Packet (Data) Format
Field Name Byte start Byte length Encoding Meaning
bmRequestType 0 1 Bitmap Describes the kind of request, and the target of it. See below.
bRequest 1 1 Code The request code itself, meanings of the rest of the fields vary by bRequest
wValue 2 2 Number A 16 bit value whose meaning varies by request type
wIndex 4 2 Number A 16 bit value whose meaning varies by request type but typically encodes an interface number or endpoint.
wLength 6 2 Number A 16 bit value indicating the length of the transfer to come.
Since bRequest is essentially a switch against which multiple kinds of setup packet are selected between, here's the meanings of a few...
GET_DESCRIPTOR (Device) setup packet
Field Name Value Meaning
bmRequestType 0x08 Data direction is IN (from device to host), recipient is the device
bRequest 0x06 GET_DESCRIPTOR (in this instance, the device descriptor is requested)
wValue 0x0001 This means the device descriptor
wIndex 0x0000 Irrelevant, there's only 1 device descriptor anyway
wLength 12 This is the length of a device descriptor (12 bytes)
SET_ADDRESS to set a device's USB address
Field Name Value Meaning
bmRequestType 0x00 Data direction is OUT (from host to device), recipient is the device
bRequest 0x05 SET_ADDRESS (Set the device's USB address)
wValue 0x00nn The address for the device to adopt (max 127)
wIndex 0x0000 Irrelevant for address setting
wLength 0 There's no data transfer expected for this setup operation
Most hardware blocks will implement an interrupt at the point that the Data packet following the Setup packet has been receive. This is typically called receiving a 'Setup' packet and then it's up to the device stack low levels to determine what to do and dispatch a handler. Otherwise an interrupt will fire for the IN or OUT tokens and if the endpoint is zero, the low level stack will handle it once more. One final thing worth noting about SET_ADDRESS is that it doesn't take effect until the completion of the zero-length "status" transaction following the setup transaction. As such, the status request from the host will still be sent to address zero (the default for new devices).

A very basic early "packet trace" This is an example, and is not guaranteed to be the packet sequence in all cases. It's a good indication of the relative complexity involved in getting a fresh USB device onto the bus though... When a device first attaches to the bus, the bus is in RESET state and so the first event a device sees is a RESET which causes it to set its address to zero, clear any endpoints, clear the configuration, and become ready for control transfers. Shortly after this, the device will become suspended. Next, the host kicks in and sends a port reset of around 30ms. After this, the host is ready to interrogate the device. The host sends a GET_DESCRIPTOR to the device, whose address at this point is zero. Using the information it receives from this, it can set up the host-side memory buffers since the device descriptor contains the maximum transfer size which the device supports. The host is now ready to actually 'address' the device, and so it sends another reset to the device, again around 30ms in length. The host sends a SET_ADDRESS control request to the device, telling it that its new address is nn. Once the acknowledgement has been sent from the host for the zero-data status update from the device, the device sets its internal address to the value supplied in the request. From now on, the device shall respond only to requests to nn rather than to zero. At this point, the host will begin interrogating further descriptors, looking at the configuration descriptors and the strings, to build its host-side representation of the device. These will be GET_DESCRIPTOR and GET_STRING_DESCRIPTOR requests and may continue for some time. Once the host has satisfied itself that it knows everything it needs to about the device, it will issue a SET_CONFIGURATION request which basically starts everything up in the device. Once the configuration is set, interrupt endpoints will be polled, bulk traffic will be transferred, Isochronous streams begin to run, etc.

Okay, but how do we make this concrete? So far, everything we've spoken about has been fairly abstract, or at least "soft". But to transfer data over USB does require some hardware. (Okay, okay, we could do it all virtualised, but there's no fun in that). The hardware I'm going to be using for the duration of this series is the STM32 on the blue-pill development board. This is a very simple development board which does (in theory at least) support USB device mode. If we view the schematic for the blue-pill, we can see a very "lightweight" USB interface which has a pullup resistor for D+. This is the way that a device signals to the host that it is present, and that it wants to speak at full-speed. If the pullup were on D- then it would be a low-speed device. High speed devices need a little more complexity which I'm not going to go into for today. The USB lines connect to pins PA11 and PA12 which are the USB pins on the STM32 on the board. Since USB is quite finicky, the STM32 doesn't let you remap that function elsewhere, so this is all looking quite good for us so far. The specific STM32 on the blue-pill is the STM32F103C8T6. By viewing its product page on ST's website we can find the reference manual for the part. Jumping to section 23 we learn that this STM32 supports full-speed USB2.0 which is convenient given the past article and a half. We also learn it supports up to eight endpoints active at any one time, and offers double-buffering for our bulk and isochronous transfers. It has some internal memory for packet buffering, so it won't use our RAM bandwidth while performing transfers, which is lovely. I'm not going to distill the rest of that section here, because there's a large amount of data which explains how the USB macrocell operates. However useful things to note are:
  • How IN OUT and SETUP transfers work.
  • How the endpoint buffer memory is configured.
  • That all bus-powered devices MUST respond to suspend/resume properly
  • That the hardware will prioritise endpoint interrupts for us so that we only need deal with the most pressing item at any given time.
  • There is an 'Enable Function' bit in the address register which must be set or we won't see any transactions at all.
  • How the endpoint registers signal events to the device firmware.
Next time, we're going to begin the process of writing a very hacky setup routine to try and initialise the USB device macrocell so that we can see incoming transactions through the ITM. It should be quite exciting, but given how complex this will be for me to learn, it might be a little while before it comes through.

Bits from Debian: DebConf17 Open Day

Today, the day preceeding the official start of the annual Debian Conference, is the Open Day at DebConf17, at Coll ge Maisonneuve in Montreal (Canada). This day is open to the public with events of interest to a wide audience. The schedule of today's events include, among others: Everyone is welcome to attend! It is a great possibility for interested users to meet our community and for Debian to widen our community. See the full schedule for today's events at https://debconf17.debconf.org/schedule/open-day/. If you want to engage remotely, you can watch the video streaming of the Open Day events happening in the "Rex" room, or join the conversation in the channels #debconf17-rex, #debconf17-potato and #debconf17-woody in the OFTC IRC network. DebConf is committed to a safe and welcome environment for all participants. See the DebConf Code of Conduct and the Debian Code of Conduct for more details on this. Debian thanks the commitment of numerous sponsors to support DebConf17, particularly our Platinum Sponsors Savoir-Faire Linux, Hewlett Packard Enterprise, and Google. DebConf17 logo

2 August 2017

Markus Koschany: PDFsam: How to upgrade a Maven application for Debian

In the coming weeks and months I intend to write a mini series about packaging Java software for Debian. The following article basically starts in the middle of this journey because the PDFsam upgrade is still fresh in my mind. It requires some preexisting knowledge about build tools like Maven and some Java terminology. But do not fear. Hopefully it will make sense in the end when all pieces fall into place. A month ago I decided to upgrade PDFsam, a Java application to split, merge, extract, mix and rotate PDF documents. The current version 1.1.4 is already seven years old and uses Ant as its build system. Unfortunately up to now nobody was interested enough to invest the time to upgrade it to the latest version. A quick internet search unveils that the current sources can be found on github.com. Another brief look reveals we are dealing with a Maven project here because we can find a pom.xml file in the root directory and there is no sign of Ant s typical build.xml file anymore. Here are some general tips how to proceed from this point by using the PDFsam upgrade as an example. Find out how many new dependencies you really need The pom.xml file declares its dependencies in the <dependencies> section. It is good practice to inspect the pom.xml file and determine how much work will be required to upgrade the package. A seasoned Java packager will quickly find common dependencies like Hibernate or the Apache Commons libraries. Fortunately for you they are already packaged in Debian because a lot of projects depend on them. If you are unsure what is and what is not packaged for Debian, tracker.debian.org and codesearch.debian.net are useful tools to search for those packages. If in doubt just ask on debian-java@lists.debian.org. There is no automagical tool (yet) to find out what dependencies are really new (we talk about mh_make soon) but if you use the aforementioned tools and websites you will notice that in June 2017 one could not find the following artifacts: fontawesomefx, eventstudio, sejda-* and jackson-jr-objects. There are also jdepend and testFx but notice they are marked as <scope>test</scope> meaning they are only required if you would like to run upstream s test suite as well. For the sake of simplicity, it is best to ignore them for now and to focus on packaging only dependencies which are really needed to compile the application. Test dependencies can always be added later. This pom.xml investigation leads us to the following conclusion: PDFsam depends on Sejda, a PDF library. Basically Sejda is the product of a major refactoring that happened years ago and allows upstream to develop PDFsam faster and in multiple directions. For Debian packagers it is quite clear now that the upgrade of PDFsam is in reality more like packaging a completely new application. The inspection of Sejda s pom.xml file (another Maven project) reveals we also have to package imgscalr, Twelvemonkeys and SAMBox. We continue with these pom.xml analyses and end up with these new source packages: jackson-jr, libimgscalr-java, libsambox-java, libsejda-java, libsejda-injector-java, libsejda-io-java, libsejda-eventstudio-java, libtwelvemonkeys-java, fontawesomefx and libpdfbox2-java. Later I discovered that gettext-maven-plugin was also required. This was not obvious at first glance if you only check the pom.xml in the root directory but PDFsam and Sejda are multi-module projects! In this case every subdirectory (module) contains another pom.xml with additional information, so ideally you should check those too before you decide to start with your packaging. But don t worry it is often possible to ignore modules with a simple ignore rule inside your debian/*.poms file. The package will have less functionality but it can be still useful if you only need a subset of the modules. Of course in this case ignoring the gettext-maven-plugin artifact would result in a runtime error. C est la vie. A brief remark about Java package names: Java library packages must be named like libXXX-java. This is important for binary packages to avoid naming collisions. We are more tolerant when it comes to source package names but in general we recommend to use the exact same name as for the binary package. There are exceptions like prefixing source packages with their well known project name like jackson-XXX or jboss-XXX but this should only be used when there are already existing packages that use such a naming scheme. If in doubt, talk to us. mh_make or how to quickly generate an initial debian directory Packaging a Maven library is usually not very difficult even if it consists of multiple modules. The tricky part is to get the maven.rules, maven.IgnoreRules and your *.poms file right but debian/rules often only consists of a single dh line and the rest is finding the build-dependencies and adding them to debian/control. A small tool called mh_make, which is included in maven-debian-helper, can lend you a helping hand. The tool is not perfect yet. It requires that most build-dependencies are already installed on your local system, otherwise it won t create the initial debian directory and will only produce some unfinished (but in some cases still useful) files. A rule of thumb is to start with a package that does not depend on any other new dependency and requires the fewest build-dependencies. I have chosen libtwelvemonkeys-java because it was the simplest package and met the aforementioned criteria. Here is how mh_make looks like in action. (The animated GIF was created with Byzanz) First of all download the release tarball, unpack it and run mh_make inside the root directory. Ok, what is happening here? First you can choose a source and binary package name. Then disable the tests and don t run javadoc to create the documentation. This will simplify things a little. Tests and javadoc settings can be added later. Choose the version you want to package and then you can basically follow the default recommendations and confirm them by hitting the Enter key. Throughout the project we choose to transform the upstream version with the symbolic debian version. Remember that Java/Maven is version-centric. This will ensure that our Maven dependencies are always satisfied later and we can simply upgrade our Maven libraries and don t have to change the versions by hand in various pom.xml files; maven-debian-helper will automatically transform them for us to debian . Enable all modules. If you choose not to, you can select each module individually. Note that later on some of the required build-dependencies cannot be found because they are either not installed (libjmagick6-java) or they cannot be found in Debian s Maven repository under /usr/share/maven-repo. You can fix this by entering a substitution rule or, as I did in this case, you can just ignore these artifacts for now. They will be added to maven.IgnoreRules. In order to successfully compile your program you have to remove them from this file later again, create the correct substitution rule in maven.rules and add the missing build-dependencies to debian/control. For now we just want to quickly create our initial debian directory. If everything went as planned a complete debian directory should be visible in your root directory. The only thing left is to fix the substitution rule for the Servlet API 3.1. Add libservlet3.1-java to Build-Depends and the following rule to maven.rules: javax.servlet s/servlet-api/javax.servlet-api/ * s/.*/3.1/ * *
s/javax.servlet/javax.servlet.jsp/ s/jsp-api/javax.servlet.jsp-api/ * s/.*/2.3/ * * The maven.rules file consists of multiple rows separated by six columns. The values represent groupId, artifactId, type, version number and two fields which I never use.  You can just use an asterisk to match any value. Every value can be substituted. This is necessary when the value of upstream s pom.xml file differs from Debian s system packages. This happens frequently for API packages which are uploaded to Maven Central multiple times under a different groupId/artifactId but provide the same features. In this case the Twelvemonkeys pom requires an older API version but Debian is already at version 3.1. Note that we require a strict version number in this case because libservlet3.1-java does not use a symbolic debian version since we provide more than one Servlet API in the archive and this measure prevents conflicts. Thanks for reading this far. More articles about Java packaging will follow in the near future and hopefully they will clarify some terms and topics which could only be briefly mentioned in this post.

before

and after

1 August 2017

Reproducible builds folks: Reproducible Builds: Weekly report #118

Here's what happened in the Reproducible Builds effort between Sunday July 23 and Saturday July 29 2017: Toolchain development and fixes Packages reviewed and fixed, and bugs filed Reviews of unreproducible packages 4 package reviews have been added, 2 have been updated and 24 have been removed in this week, adding to our knowledge about identified issues. Weekly QA work During our reproducibility testing, FTBFS bugs have been detected and reported by: diffoscope development Misc. This week's edition was written by Chris Lamb, Mattia Rizzolo & reviewed by a bunch of Reproducible Builds folks on IRC & the mailing lists.

Russ Allbery: Learning Rust

I'm obviously not spending much time writing here. It's been a rather busy month at work, and I've been doing other things on the weekend that aren't particularly interesting to write about. This past week, though, I took advantage of our semi-annual Hack Week to finally learn Rust. I have several co-workers who love the language and have been wanting to stretch my programming language knowledge a bit. I was also profoundly disappointed by Go, which has been touted as the new C-style systems language but which I think is awful. All the reasons why is a topic for another post, but the obnoxiously verbose error handling is probably my biggest complaint. (This is the worst property of C; why would you copy it?) Rust was a favorite of a few people who felt the same way I did about Go, which seemed promising. I made it through the first thirteen chapters of the second edition Rust book and wrote a not-entirely-trivial program (a tool to filter and search trace logs a Dropbox client) with a co-worker, and I think I'm in love with this language. It reminds me of everything I liked about Perl, except with all the weird bolted-on bits of Perl cleaned up and done properly, and with types. Despite having spent most of my career writing Perl and Python (and C, which is typed but not very well), I love strongly-typed languages. I just usually don't like the rest of the syntax of languages like Java and Go. Rust avoids the garbage collection nonsense (and huge performance issues), gives me the level of fine control that I am used to with C, but gets rid of memory allocation errors and provides a much richer type system and type matching. It feels a bit like an approachable Haskell, and I quickly found myself chaining iterators and pushing myself to write in a more functional style. The lifetime stuff in Rust can be frustrating, and there are a few limitations that can be hard to deal with (like iterating over one field of a struct while modifying another field of a struct, which comes up a lot and which is the sort of thing you have to avoid in Rust). But I like a language with a very picky compiler. And I love programming in a language where my first attempt is clunky and verbose, and then I think about the problem a bit and rewrite it in half as many lines of code, and then I sleep on it and come back and can delete half of the code again. I sadly don't have a lot of work projects right now where Rust is the right answer. I'm mostly maintaining existing code bases in Python, and Python is more accessible and more maintainable in most situations. But I now would love to find the time to rewrite a bunch of my personal C projects in Rust, and I'm watching for any new opportunity to use Rust. If you like new programming languages, but you don't have the time or inclination to live on the bleeding edge, Rust has gotten more stable and is at a good point to start. The documentation is fantastic, support for generating documentation is built into the language, the Rust book is a great teaching research, and Rust is available as Debian packages (so you don't have to do the horrifying curl bash nonsense in the official Rust documentation). Recommended, particularly for people who love Perl or functional languages (or functional Perl heavy on map and grep), want a more modern language with fewer odd corners, and want low-level control and native speed.

31 July 2017

Chris Lamb: Free software activities in July 2017

Here is my monthly update covering what I have been doing in the free software world during July 2017 (previous month): I also blogged about my recent lintian hacking and installation-birthday package.
Reproducible builds

Whilst anyone can inspect the source code of free software for malicious flaws, most software is distributed pre-compiled to end users. The motivation behind the Reproducible Builds effort is to permit verification that no flaws have been introduced either maliciously or accidentally during this compilation process by promising identical results are always generated from a given source, thus allowing multiple third-parties to come to a consensus on whether a build was compromised. (I have generously been awarded a grant from the Core Infrastructure Initiative to fund my work in this area.) This month I:
  • Assisted Mattia with a draft of an extensive status update to the debian-devel-announce mailing list. There were interesting follow-up discussions on Hacker News and Reddit.
  • Submitted the following patches to fix reproducibility-related toolchain issues within Debian:
  • I also submitted 5 patches to fix specific reproducibility issues in autopep8, castle-game-engine, grep, libcdio & tinymux.
  • Categorised a large number of packages and issues in the Reproducible Builds "notes" repository.
  • Worked on publishing our weekly reports. (#114 #115, #116 & #117)

I also made the following changes to our tooling:
diffoscope

diffoscope is our in-depth and content-aware diff utility that can locate and diagnose reproducibility issues.

  • comparators.xml:
    • Fix EPUB "missing file" tests; they ship a META-INF/container.xml file. [ ]
    • Misc style fixups. [ ]
  • APK files can also be identified as "DOS/MBR boot sector". (#868486)
  • comparators.sqlite: Simplify file detection by rewriting manual recognizes call with a Sqlite3Database.RE_FILE_TYPE definition. [ ]
  • comparators.directory:
    • Revert the removal of a try-except. (#868534)
    • Tidy module. [ ]

strip-nondeterminism

strip-nondeterminism is our tool to remove specific non-deterministic results from a completed build.

  • Add missing File::Temp imports in the JAR and PNG handlers. This appears to have been exposed by lazily-loading handlers in #867982. (#868077)

buildinfo.debian.net

buildinfo.debian.net is my experiment into how to process, store and distribute .buildinfo files after the Debian archive software has processed them.

  • Avoid a race condition between check-and-creation of Buildinfo instances. [ ]


Debian My activities as the current Debian Project Leader are covered in my "Bits from the DPL emails to the debian-devel-announce mailing list.
Patches contributed
  • obs-studio: Remove annoying "click wrapper" on first startup. (#867756)
  • vim: Syntax highlighting for debian/copyright files. (#869965)
  • moin: Incorrect timezone offset applied due to "84600" typo. (#868463)
  • ssss: Add a simple autopkgtest. (#869645)
  • dch: Please bump $latest_bpo_dist to current stable release. (#867662)
  • python-kaitaistruct: Remove Markdown and homepage references from package long descriptions. (#869265)
  • album-data: Correct invalid Vcs-Git URI. (#869822)
  • pytest-sourceorder: Update Homepage field. (#869125)
I also made a very large number of contributions to the Lintian static analysis tool. To avoid duplication here, I have outlined them in a separate post.

Debian LTS

This month I have been paid to work 18 hours on Debian Long Term Support (LTS). In that time I did the following:
  • "Frontdesk" duties, triaging CVEs, etc.
  • Issued DLA 1014-1 for libclamunrar, a library to add unrar support to the Clam anti-virus software to fix an arbitrary code execution vulnerability.
  • Issued DLA 1015-1 for the libgcrypt11 crypto library to fix a "sliding windows" information leak.
  • Issued DLA 1016-1 for radare2 (a reverse-engineering framework) to prevent a remote denial-of-service attack.
  • Issued DLA 1017-1 to fix a heap-based buffer over-read in the mpg123 audio library.
  • Issued DLA 1018-1 for the sqlite3 database engine to prevent a vulnerability that could be exploited via a specially-crafted database file.
  • Issued DLA 1019-1 to patch a cross-site scripting (XSS) exploit in phpldapadmin, a web-based interface for administering LDAP servers.
  • Issued DLA 1024-1 to prevent an information leak in nginx via a specially-crafted HTTP range.
  • Issued DLA 1028-1 for apache2 to prevent the leakage of potentially confidential information via providing Authorization Digest headers.
  • Issued DLA 1033-1 for the memcached in-memory object caching server to prevent a remote denial-of-service attack.

Uploads
  • redis:
    • 4:4.0.0-1 Upload new major upstream release to unstable.
    • 4:4.0.0-2 Make /usr/bin/redis-server in the primary package a symlink to /usr/bin/redis-check-rdb in the redis-tools package to prevent duplicate debug symbols that result in a package file collision. (#868551)
    • 4:4.0.0-3 Add -latomic to LDFLAGS to avoid a FTBFS on the mips & mipsel architectures.
    • 4:4.0.1-1 New upstream version. Install 00-RELEASENOTES as the upstream changelog.
    • 4:4.0.1-2 Skip non-deterministic tests that rely on timing. (#857855)
  • python-django:
    • 1:1.11.3-1 New upstream bugfix release. Check DEB_BUILD_PROFILES consistently, not DEB_BUILD_OPTIONS.
  • bfs:
    • 1.0.2-2 & 1.0.2-3 Use help2man to generate a manpage.
    • 1.0.2-4 Set hardening=+all for bindnow, etc.
    • 1.0.2-5 & 1.0.2-6 Don't use upstream's release target as it overrides our CFLAGS & install RELEASES.md as the upstream changelog.
    • 1.1-1 New upstream release.
  • libfiu:
    • 0.95-4 Apply patch from Steve Langasek to fix autopkgtests. (#869709)
  • python-daiquiri:
    • 1.0.1-1 Initial upload. (ITP)
    • 1.1.0-1 New upstream release.
    • 1.1.0-2 Tidy package long description.
    • 1.2.1-1 New upstream release.

I also reviewed and sponsored the uploads of gtts-token 1.1.1-1 and nlopt 2.4.2+dfsg-3.

Debian bugs filed
  • ITP: python-daiquiri Python library to easily setup basic logging functionality. (#867322)
  • twittering-mode: Correct incorrect time formatting due to "84600" typo. (#868479)

29 July 2017

Antoine Beaupr : My free software activities, July 2017

Debian Long Term Support (LTS) This is my monthly working on Debian LTS. This time I worked on various hairy issues surrounding ca-certificates, unattended-upgrades, apache2 regressions, libmtp, tcpdump and ipsec-tools.

ca-certificates updates I've been working on the removal of the Wosign and StartCom certificates (Debian bug #858539) and, in general, the synchronisation of ca-certificates across suites (Debian bug #867461) since at least last march. I have made an attempt at summarizing the issue which led to a productive discussion and it seems that, in the end, the maintainer will take care of synchronizing information across suites. Guido was right in again raising the question of synchronizing NSS across all suites (Debian bug #824872) which itself raised the other question of how to test reverse dependencies. This brings me back to Debian bug #817286 which, basically proposed the idea of having "proposed updates" for security issues. The problem is while we can upload test packages to stable proposed-updates, we can't do the same in LTS because the suite is closed and we operate only on security packages. This issue came up before in other security upload and we need to think better about how to solve this.

unattended-upgrades Speaking of security upgrades brings me to the question of a bug (Debian bug #867169) that was filed against the wheezy version of unattended-upgrades, which showed that the package simply stopped working since the latest stable release, because wheezy became "oldoldstable". I first suggested using the "codename" but that appears to have been introduced only after wheezy. In the end, I proposed a simple update that would fix the configuration files and uploaded this as DLA-1032-1. This is thankfully fixed in later releases and will not require such hackery when jessie becomes LTS as well.

libmtp Next up is the work on the libmtp vulnerabilities (CVE-2017-9831 and CVE-2017-9832). As I described in my announcement, the work to backport the patch was huge, as upstream basically backported a whole library from the gphoto2 package to fix those issues (and probably many more). The lack of a test suite made it difficult to trust my own work, but given that I had no (negative) feedback, I figured it was okay to simply upload the result and that became DLA-1029-1.

tcpdump I then looked at reproducing CVE-2017-11108, a heap overflow triggered tcpdump would parse specifically STP packets. In Debian bug #867718, I described how to reproduce the issue across all suites and opened an issue upstream, given that the upstream maintainers hadn't responded responded in weeks according to notes in the RedHat Bugzilla issue. I eventually worked on a patch which I shared upstream, but that was rejected as they were already working on it in their embargoed repository. I can explain this confusion and duplication of work with:
  1. the original submitter didn't really contact security@tcpdump.org
  2. he did and they didn't reply, being just too busy
  3. they replied and he didn't relay that information back
I think #2 is most likely: the tcpdump.org folks are probably very busy with tons of reports like this. Still, I should probably have contacted security@tcpdump.org directly before starting my work, even though no harm was done because I didn't divulge issues that were already public. Since then, tcpdump has released 4.9.1 which fixes the issue, but then new CVEs came out that will require more work and probably another release. People looking into this issue must be certain to coordinate with the tcpdump security team before fixing the actual issues.

ipsec-tools Another package that didn't quite have a working solution is the ipsec-tools suite, in which the racoon daemon was vulnerable to a remotely-triggered DOS attack (CVE-2016-10396). I reviewed and fixed the upstream patch which introduced a regression. Unfortunately, there is no test suite or proof of concept to control the results. The reality is that ipsec-tools is really old, and should maybe simply be removed from Debian, in favor of strongswan. Upstream hasn't done a release in years and various distributions have patched up forks of those to keep it alive... I was happy, however, to know that a maintainer will take care of updating the various suites, including LTS, with my improved patch. So this fixes the issue for now, but I would strongly encourage users to switch away from ipsec-tools in the future.

apache2 Finally, I was bitten by the old DLA-841-1 upload I did all the way back in February, as it introduced a regression (Debian bug #858373). It turns out it was possible to segfault Apache workers with a trivial HTTP request, in certain (rather exotic, I might add) configurations (ErrorDocument 400 directive pointing to a cgid script in worker mode). Still, it was a serious regression and I found a part of the nasty long patch we worked on back then that was faulty, and introduced a small fix to correct that. The proposed package unfortunately didn't yield any feedback, and I can only assume it will work okay for people. The result is the DLA-841-2 upload which fixes the regression. I unfortunately didn't have time to work on the remaining CVEs affecting apache2 in LTS at the time of writing.

Triage I also did some miscellaneous triage by filing Debian bug #867477 for poppler in an effort to document better the pending issue. Next up was some minor work on eglibc issues. CVE-2017-8804 has a patch, but it's been disputed. since the main victim of this and the core of the vulnerability (rpcbind) has already been fixed, I am not sure this vulnerability is still a thing in LTS at all. I also looked at CVE-2014-9984, but the code is so different in wheezy that I wonder if LTS is affected at all. Unfortunately, the eglibc gymnastics are a little beyond me and I do not feel confident enough to just push those issues aside for now and let them open for others to look at.

Other free software work And of course, there's my usual monthly volunteer work. My ratio is a little better this time, having reached an about even ratio between paid and volunteer work, whereas this was 60% volunteer work in march.

Announcing ecdysis I recently published ecdysis, a set of template and code samples that I frequently reuse across project. This is probably the least pronounceable project name I have ever chosen, but this is somewhat on purpose. The goal of this project is not collaboration or to become a library: it's just a personal project which I share with the world as a curiosity. To quote the README file:
The name comes from what snakes and other animals do to "create a new snake": they shed their skin. This is not so appropriate for snakes, as it's just a way to rejuvenate their skin, but is especially relevant for anthropods since then "ecdysis" may be associated with a metamorphosis:
Ecdysis is the moulting of the cuticle in many invertebrates of the clade Ecdysozoa. Since the cuticle of these animals typically forms a largely inelastic exoskeleton, it is shed during growth and a new, larger covering is formed. The remnants of the old, empty exoskeleton are called exuviae. Wikipedia
So this project is metamorphosed into others when the documentation templates, code examples and so on are reused elsewhere. For that reason, the license is an unusally liberal (for me) MIT/Expat license. The name also has the nice property of being absolutely unpronounceable, which makes it unlikely to be copied but easy to search online.
It was an interesting exercise to go back into older projects and factor out interesting code. The process is not complete yet, as there are older projects I'm still curious in reviewing. A bunch of that code could also be factored into upstream project and maybe even the Python standard library. In short, this is stuff I keep on forgetting how to do: a proper setup.py config, some fancy argparse extensions and so on. Instead of having to remember where I had written that clever piece of code, I now shove it in the crazy chaotic project where I can find it again in the future.

Beets experiments Since I started using Subsonic (or Libresonic) to manage the music on my phone, album covers are suddenly way more interesting. But my collection so far has had limited album covers: my other media player (gmpc) would download those on the fly on its own and store them in its own database - not on the filesystem. I guess this could be considered to be a limitation of Subsonic, but I actually appreciate the separation of duty here. Garbage in, garbage out: the quality of Subsonic's rendering depends largely on how well setup your library and tags are. It turns out there is an amazing tool called beets to do exactly that kind of stuff. I originally discarded that "media library management system for obsessive-compulsive [OC] music geeks", trying to convince myself i was not an "OC music geek". Turns out I am. Oh well. Thanks to beets, I was able to download album covers for a lot of the albums in my collection. The only covers that are missing now are albums that are not correctly tagged and that beets couldn't automatically fix up. I still need to go through those and fix all those tags, but the first run did an impressive job at getting album covers. Then I got the next crazy idea: after a camping trip where we forgot (again) the lyrics to Georges Brassens, I figured I could start putting some lyrics on my ebook reader. "How hard can that be?" of course, being the start of another crazy project. A pull request and 3 days later, I had something that could turn a beets lyrics database into a Sphinx document which, in turn, can be turned into an ePUB. In the process, I probably got blocked from MusixMatch a hundred times, but it's done. Phew! The resulting e-book is about 8000 pages long, but is still surprisingly responsive. In the process, I also happened to do a partial benchmark of Python's bloom filter libraries. The biggest surprise there was the performance of the set builtin: for small items, it is basically as fast as a bloom filter. Of course, when the item size grows larger, its memory usage explodes, but in this case it turned out to be sufficient and bloom filter completely overkill and confusing. Oh, and thanks to those efforts, I got admitted in the beetbox organization on GitHub! I am not sure what I will do with that newfound power: I was just scratching an itch, really. But hopefully I'll be able to help here and there in the future as well.

Debian package maintenance I did some normal upkeep on a bunch of my packages this month, that were long overdue:
  • uploaded slop 6.3.47-1: major new upstream release
  • uploaded an NMU for maim 5.4.64-1.1: maim was broken by the slop release
  • uploaded pv 1.6.6-1: new upstream release
  • uploaded kedpm 1.0+deb8u1 to jessie (oldstable): one last security fix (Debian bug #860817, CVE-2017-8296) for that derelict password manager
  • uploaded charybdis 3.5.5-1: new minor upstream release, with optional support for mbedtls
  • filed Debian bug #866786 against cryptsetup to make the remote initramfs SSH-based unlocking support multiple devices: thanks to the maintainer, this now works flawlessly in buster and may be backported to stretch
  • expanded on Debian bug #805414 against gdm3 and Debian bug #845938 against pulseaudio, because I had trouble connecting my computer to this new Bluetooth speaker. turns out this is a known issue in Pulseaudio: whereas it releases ALSA devices, it doesn't release Bluetooth devices properly. Documented this more clearly in the wiki page
  • filed Debian bug #866790 regarding old stray Apparmor profiles that were lying around my system after an upgrade, which got me interested in Debian bug #830502 in turn
  • filed Debian bug #868728 against cups regarding a weird behavior I had interacting with a network printer. turns out the other workstation was misconfigured... why are printers still so hard?
  • filed Debian bug #870102 to automate sbuild schroots upgrades
  • after playing around with rash tried to complete the packaging (Debian bug #754972) of percol with this pull request upstream. this ended up to be way too much overhead and I reverted to my old normal history habits.

Dirk Eddelbuettel: Updated overbought/oversold plot function

A good six years ago I blogged about plotOBOS() which charts a moving average (from one of several available variants) along with shaded standard deviation bands. That post has a bit more background on the why/how and motivation, but as a teaser here is the resulting chart of the SP500 index (with ticker ^GSCP): Example chart of overbought/oversold levels from plotOBOS() function The code uses a few standard finance packages for R (with most of them maintained by Joshua Ulrich given that Jeff Ryan, who co-wrote chunks of these, is effectively retired from public life). Among these, xts had a recent release reflecting changes which occurred during the four (!!) years since the previous release, and covering at least two GSoC projects. With that came subtle API changes: something we all generally try to avoid but which is at times the only way forward. In this case, the shading code I used (via polygon() from base R) no longer cooperated with the beefed-up functionality of plot.xts(). Luckily, Ross Bennett incorporated that same functionality into a new function addPolygon --- which even credits this same post of mine. With that, the updated code becomes
## plotOBOS -- displaying overbough/oversold as eg in Bespoke's plots
##
## Copyright (C) 2010 - 2017  Dirk Eddelbuettel
##
## This is free software: you can redistribute it and/or modify it
## under the terms of the GNU General Public License as published by
## the Free Software Foundation, either version 2 of the License, or
## (at your option) any later version.
suppressMessages(library(quantmod))     # for getSymbols(), brings in xts too
suppressMessages(library(TTR))          # for various moving averages
plotOBOS <- function(symbol, n=50, type=c("sma", "ema", "zlema"),
                     years=1, blue=TRUE, current=TRUE, title=symbol,
                     ticks=TRUE, axes=TRUE)  
    today <- Sys.Date()
    if (class(symbol) == "character")  
        X <- getSymbols(symbol, from=format(today-365*years-2*n), auto.assign=FALSE)
        x <- X[,6]                          # use Adjusted
      else if (inherits(symbol, "zoo"))  
        x <- X <- as.xts(symbol)
        current <- FALSE                # don't expand the supplied data
     
    n <- min(nrow(x)/3, 50)             # as we may not have 50 days
    sub <- ""
    if (current)  
        xx <- getQuote(symbol)
        xt <- xts(xx$Last, order.by=as.Date(xx$ Trade Time ))
        colnames(xt) <- paste(symbol, "Adjusted", sep=".")
        x <- rbind(x, xt)
        sub <- paste("Last price: ", xx$Last, " at ",
                     format(as.POSIXct(xx$ Trade Time ), "%H:%M"), sep="")
     
    type <- match.arg(type)
    xd <- switch(type,                  # compute xd as the central location via selected MA smoother
                 sma = SMA(x,n),
                 ema = EMA(x,n),
                 zlema = ZLEMA(x,n))
    xv <- runSD(x, n)                   # compute xv as the rolling volatility
    strt <- paste(format(today-365*years), "::", sep="")
    x  <- x[strt]                       # subset plotting range using xts' nice functionality
    xd <- xd[strt]
    xv <- xv[strt]
    xyd <- xy.coords(.index(xd),xd[,1]) # xy coordinates for direct plot commands
    xyv <- xy.coords(.index(xv),xv[,1])
    n <- length(xyd$x)
    xx <- xyd$x[c(1,1:n,n:1)]           # for polygon(): from first point to last and back
    if (blue)  
        blues5 <- c("#EFF3FF", "#BDD7E7", "#6BAED6", "#3182BD", "#08519C") # cf brewer.pal(5, "Blues")
        fairlylight <<- rgb(189/255, 215/255, 231/255, alpha=0.625) # aka blues5[2]
        verylight <<- rgb(239/255, 243/255, 255/255, alpha=0.625) # aka blues5[1]
        dark <<- rgb(8/255, 81/255, 156/255, alpha=0.625) # aka blues5[5]
        ## buglet in xts 0.10-0 requires the <<- here
      else  
        fairlylight <<- rgb(204/255, 204/255, 204/255, alpha=0.5)  # two suitable grays, alpha-blending at 50%
        verylight <<- rgb(242/255, 242/255, 242/255, alpha=0.5)
        dark <<- 'black'
     
    plot(x, ylim=range(range(x, xd+2*xv, xd-2*xv, na.rm=TRUE)), main=title, sub=sub, 
         major.ticks=ticks, minor.ticks=ticks, axes=axes) # basic xts plot setup
    addPolygon(xts(cbind(xyd$y+xyv$y, xyd$y+2*xyv$y), order.by=index(x)), on=1, col=fairlylight)  # upper
    addPolygon(xts(cbind(xyd$y-xyv$y, xyd$y+1*xyv$y), order.by=index(x)), on=1, col=verylight)    # center
    addPolygon(xts(cbind(xyd$y-xyv$y, xyd$y-2*xyv$y), order.by=index(x)), on=1, col=fairlylight)  # lower
    lines(xd, lwd=2, col=fairlylight)   # central smooted location
    lines(x, lwd=3, col=dark)           # actual price, thicker
 
and the main change are the three calls to addPolygon. To illustrate, we call plotOBOS("SPY", years=2) with an updated plot of the ETF representing the SP500 over the last two years: Updated example chart of overbought/oversold levels from plotOBOS() function Comments and further enhancements welcome!

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

28 July 2017

Joachim Breitner: How is coinduction the dual of induction?

Earlier today, I demonstrated how to work with coinduction in the theorem provers Isabelle, Coq and Agda, with a very simple example. This reminded me of a discussion I had in Karlsruhe with my then colleague Denis Lohner: If coinduction is the dual of induction, why do the induction principles look so different? I like what we observed there, so I d like to share this. The following is mostly based on my naive understanding of coinduction based on what I observe in the implementation in Isabelle. I am sure that a different, more categorial presentation of datatypes (as initial resp. terminal objects in some category of algebras) makes the duality more obvious, but that does not necessarily help the working Isabelle user who wants to make sense of coninduction.

Inductive lists I will use the usual polymorphic list data type as an example. So on the one hand, we have normal, finite inductive lists:
datatype 'a list = nil   cons (hd : 'a) (tl : "'a list")
with the well-known induction principle that many of my readers know by heart (syntax slightly un-isabellized):
P nil   ( x xs. P xs   P (cons x xs))     xs. P xs

Coinductive lists In contrast, if we define our lists coinductively to get possibly infinite, Haskell-style lists, by writing
codatatype 'a llist = lnil   lcons (hd : 'a)  (tl : "'a llist")
we get the following coinduction principle:
(  xs ys.
    R xs ys'   (xs = lnil) = (ys = lnil)  
               (xs   lnil   ys'   lnil  
	         hd xs = hd ys   R (tl xs) (tl ys)))  
  (  xs ys. R xs ys   xs = ys)
This is less scary that it looks at first. It tell you if you give me a relation R between lists which implies that either both lists are empty or both lists are nonempty, and furthermore if both are non-empty, that they have the same head and tails related by R, then any two lists related by R are actually equal. If you think of the infinte list as a series of states of a computer program, then this is nothing else than a bisimulation. So we have two proof principles, both of which make intuitive sense. But how are they related? They look very different! In one, we have a predicate P, in the other a relation R, to point out just one difference.

Relation induction To see how they are dual to each other, we have to recognize that both these theorems are actually specializations of a more general (co)induction principle. The datatype declaration automatically creates a relator:
rel_list :: ('a   'b   bool)   'a list   'b list   bool
The definition of rel_list R xs ys is that xs and ys have the same shape (i.e. length), and that the corresponding elements are pairwise related by R. You might have defined this relation yourself at some time, and if so, you probably introduced it as an inductive predicate. So it is not surprising that the following induction principle characterizes this relation:
Q nil nil  
( x xs y ys. R x y   Q xs ys   Q (cons x xs) (cons y ys))  
( xs ys   rel_list R xs ys   Q xs ys)
Note how how similar this lemma is in shape to the normal induction for lists above! And indeed, if we choose Q xs ys (P xs xs = ys) and R x y (x = y), then we obtain exactly that. In that sense, the relation induction is a generalization of the normal induction.

Relation coinduction The same observation can be made in the coinductive world. Here, as well, the codatatype declaration introduces a function
rel_llist :: ('a   'b   bool)   'a llist   'b llist   bool
which relates lists of the same shape with related elements only that this one also relates infinite lists, and therefore is a coinductive relation. The corresponding rule for proof by coinduction is not surprising and should remind you of bisimulation, too:
( xs ys.
    R xs ys   (xs = lnil) = (ys = lnil)  
              (xs   lnil   ys   lnil  
	        Q (hd xs) (hd ys)   R (tl xs) (tl ys)))  
(  xs ys   R xs ys   rel_llist Q xs ys)
It is even more obvious that this is a generalization of the standard coinduction principle shown above: Just instantiate Q with equality, which turns rel_llist Q into equality on the lists, and you have the theorem above.

The duality With our induction and coinduction principle generalized to relations, suddenly a duality emerges: If you turn around the implication in the conclusion of one you get the conclusion of the other one. This is an example of cosomething is something with arrows reversed . But what about the premise(s) of the rules? What happens if we turn around the arrow here? Although slighty less immediate, it turns out that they are the same as well. To see that, we start with the premise of the coinduction rule, reverse the implication and then show that to be equivalent to the two premises of the induction rule:
( xs ys.
    R xs ys   (xs = lnil) = (ys = lnil)  
              (xs   lnil   ys   lnil  
	        Q (hd xs) (hd ys)   R (tl xs) (tl ys)))
=   case analysis (the other two cases are vacuously true)  
  ( xs ys.
    xs = lnil   ys = lnil  
    R xs ys   (xs = lnil) = (ys = lnil)  
              (xs   lnil   ys   lnil  
	        Q (hd xs) (hd ys)   R (tl xs) (tl ys)))
  ( xs ys.
    xs   lnil   ys   lnil
    R xs ys   (xs = lnil) = (ys = lnil)  
              (xs   lnil   ys   lnil  
	        Q (hd xs) (hd ys)   R (tl xs) (tl ys)))
=   simplification  
  ( xs ys.  xs = lnil   ys = lnil   R xs ys
  ( x xs y ys.  R (cons x xs) (cons y ys)   (Q x y   R xs ys))
=   more rewriting  
  R nil nil
  ( x xs y ys. Q x y   R xs ys   R (cons x xs) (cons y ys))

Conclusion The coinduction rule is not the direct dual of the induction rule, but both are specializations of more general, relational proof methods, where the duality is clearly present. More generally, this little excursion shows that it is often beneficial to think of types less as sets, and more as relations this way of thinking is surprisingly fruitful, and led to proofs of parametricity and free theorems and other nice things.

27 July 2017

Joachim Breitner: Coinduction in Coq and Isabelle

The DeepSpec Summer School is almost over, and I have had a few good discussions. One revolved around coinduction: What is it, how does it differ from induction, and how do you actually prove something. In the course of the discussion, I came up with a very simple coinductive exercise, and solved it both in Coq and Isabelle

The task Define the extended natural numbers coinductively. Define the min function and the relation. Show that min(n, m) n holds.

Coq The definitions are straight forward. Note that in Coq, we use the same command to define a coinductive data type and a coinductively defined relation:
CoInductive ENat :=
    N : ENat
    S : ENat -> ENat.
CoFixpoint min (n : ENat) (m : ENat)
  :=match n, m with   S n', S m' => S (min n' m')
                      _, _       => N end.
CoInductive le : ENat -> ENat -> Prop :=
    leN : forall m, le N m
    leS : forall n m, le n m -> le (S n) (S m).
The lemma is specified as
Lemma min_le: forall n m, le (min n m) n.
and the proof method of choice to show that some coinductive relation holds, is cofix. One would wish that the following proof would work:
Lemma min_le: forall n m, le (min n m) n.
Proof.
  cofix.
  destruct n, m.
  * apply leN.
  * apply leN.
  * apply leN.
  * apply leS.
    apply min_le.
Qed.
but we get the error message
Error:
In environment
min_le : forall n m : ENat, le (min n m) n
Unable to unify "le N ?M170" with "le (min N N) N
Effectively, as Coq is trying to figure out whether our proof is correct, i.e. type-checks, it stumbled on the equation min N N = N, and like a kid scared of coinduction, it did not dare to run the min function. The reason it does not just run a CoFixpoint is that doing so too daringly might simply not terminate. So, as Adam explains in a chapter of his book, Coq reduces a cofixpoint only when it is the scrutinee of a match statement. So we need to get a match statement in place. We can do so with a helper function:
Definition evalN (n : ENat) :=
  match n with   N => N
                 S n => S n end.
Lemma evalN_eq : forall n, evalN n = n.
Proof. intros. destruct n; reflexivity. Qed.
This function does not really do anything besides nudging Coq to actually evaluate its argument to a constructor (N or S _). We can use it in the proof to guide Coq, and the following goes through:
Lemma min_le: forall n m, le (min n m) n.
Proof.
  cofix.
  destruct n, m; rewrite <- evalN_eq with (n := min _ _).
  * apply leN.
  * apply leN.
  * apply leN.
  * apply leS.
    apply min_le.
Qed.

Isabelle In Isabelle, definitions and types are very different things, so we use different commands to define ENat and le:
theory ENat imports  Main begin
codatatype ENat =  N   S  ENat
primcorec min where
   "min n m = (case n of
       N   N
       S n'   (case m of
        N   N
        S m'   S (min n' m')))"
coinductive le where
  leN: "le N m"
  leS: "le n m   le (S n) (S m)"
There are actually many ways of defining min; I chose the one most similar to the one above. For more details, see the corec tutorial. Now to the proof:
lemma min_le: "le (min n m) n"
proof (coinduction arbitrary: n m)
  case le
  show ?case
  proof(cases n)
    case N then show ?thesis by simp
  next
    case (S n') then show ?thesis
    proof(cases m)
      case N then show ?thesis by simp
    next
      case (S m')  with  n = _  show ?thesis
        unfolding min.code[where n = n and m = m]
        by auto
    qed
  qed
qed
The coinduction proof methods produces this goal:
proof (state)
goal (1 subgoal):
 1.  n m. ( m'. min n m = N   n = m')  
          ( n' m'.
               min n m = S n'  
               n = S m'  
	       (( n m. n' = min n m   m' = n)   le n' m'))
I chose to spell the proof out in the Isar proof language, where the outermost proof structure is done relatively explicity, and I proceed by case analysis mimiking the min function definition. In the cases where one argument of min is N, Isabelle s simplifier (a term rewriting tactic, so to say), can solve the goal automatically. This is because the primcorec command produces a bunch of lemmas, one of which states n = N m = N min n m = N. In the other case, we need to help Isabelle a bit to reduce the call to min (S n) (S m) using the unfolding methods, where min.code contains exactly the equation that we used to specify min. Using just unfolding min.code would send this method into a loop, so we restrict it to the concrete arguments n and m. Then auto can solve the remaining goal (despite all the existential quantifiers).

Summary Both theorem provers are able to prove the desired result. To me it seems that it is slightly more convenient in Isabelle because a lot of Coq infrastructure relies on the type checker being able to effectively evaluate expressions, which is tricky with cofixpoints, wheras evaluation plays a much less central role in Isabelle, where rewriting is the crucial technique, and while one still cannot simply throw min.code into the simpset, so working with objects that do not evaluate easily or completely is less strange.

Agda I was challenged to do it in Agda. Here it is:
module ENat where
open import Coinduction
data ENat : Set where
  N : ENat
  S :   ENat   ENat
min : ENat   ENat   ENat
min (S n') (S m') = S (  (min (  n') (  m')))
min _ _ = N
data le : ENat   ENat   Set where
  leN :    m    le N m
  leS :    n m      (le (  n) (  m))   le (S n) (S m)
min_le :    n m    le (min n m) n
min_le  S n'   S m'  = leS (  min_le)
min_le  N      S m'  = leN
min_le  S n'   N  = leN
min_le  N      N  = leN
I will refrain from commenting it, because I do not really know what I have been doing here, but it typechecks, and refer you to the official documentation on coinduction in Agda. But let me note that I wrote this using plain inductive types and recursion, and added , and until it worked.

Michal &#268;iha&#345;: Weblate 2.16: Call for translations

Weblate 2.16 is almost ready (I expect no further code changes), so it's really great time to contribute to it's translations! Weblate 2.16 will be probably released during my presence at DebConf 17. As you might expect, Weblate is translated using Weblate, so the contributions should be really easy. In case there is something unclear, you can look into Weblate documentation. I'd especially like to see improvements in the Italian translation which was one of the first in Weblate beginnings, but hasn't received much love in past years.

Filed under: Debian English SUSE Weblate

25 July 2017

Russell Coker: Forking Mon and DKIM with Mailing Lists

I have forked the Mon network/server monitoring system. Here is a link to the new project page [1]. There hasn t been an upstream release since 2010 and I think we need more frequent releases than that. I plan to merge as many useful monitoring scripts as possible and support them well. All Perl scripts will use strict and use other best practices. The first release of etbe-mon is essentially the same as the last release of the mon package in Debian. This is because I started work on the Debian package (almost all the systems I want to monitor run Debian) and as I had been accepted as a co-maintainer of the Debian package I put all my patches into Debian. It s probably not a common practice for someone to fork upstream of a package soon after becoming a comaintainer of the Debian package. But I believe that this is in the best interests of the users. I presume that there are other collections of patches out there and I hope to merge them so that everyone can get the benefits of features and bug fixes that have been separate due to a lack of upstream releases. Last time I checked mon wasn t in Fedora. I believe that mon has some unique features for simple monitoring that would be of benefit to Fedora users and would like to work with anyone who wants to maintain the package for Fedora. I am also interested in working with any other distributions of Linux and with non-Linux systems. While setting up the mailing list for etbemon I wrote an article about DKIM and mailing lists (primarily Mailman) [2]. This explains how to setup Mailman for correct operation with DKIM and also why that seems to be the only viable option.

Satyam Zode: Maya - the OpenEBS Go Kit Project

The Kit project in Go is the common project containing all the standard libraries or packages used across all the Go projects in the organization. Motivation I attended GopherCon India 2017, there was a talk on Package Oriented Design In Go by William Kennedy. In that talk, William explained some really important and thoughtful design principles which We can apply in our day to day life, while writing Go. Hence, I wanted to apply these design philosophies to the Go projects in which I have been working on as a part of OpenEBS project. I learnt a good practice of having a Go Kit project at the organization level from William s talk. What is the Kit Project? The Kit project in Go is the common project containing all the standard libraries or packages used across all the Go projects in the organization. Packages in the Kit project should follow design philosophies. Need for a Kit project Sometimes, We write same Go packages again and again to do the same task at different levels in the different Go projects under the same organization. For example, we write custom logger package in the different Go projects. If the custom logger package is same across the organization and can be reused by simply importing it, then this custom logger package is the perfect fit for Kit project. You can sense how much time and cost it will save for us when we have a Kit project. How to convert existing projects to have kit Maya is the kit project in the progress. I will walk through our journey of creating a Kit project called maya for OpenEBS organization from existing Go projects. At OpenEBS, as a open source and growing Go project, We value Go principles and We try hard to leverage Go s offerings. Maya is the Kit project for the Application projects like maya-apiserver, maya-storage-bot etc. Maya contains all the kubernetes & nomad API s, common utilities etc. needed for development of maya-apiserver and maya-storage-bot. In the near future, we are trying to push our custom libraries to maya. So that, it will become a promising Go kit project for OpenEBS community. We have specifically followed the package oriented design principles in Go to create maya as a kit project. Project structure for the Maya as Kit project Example usage of maya kit project in maya-apiserver Maya-apiserver uses maya as a Kit project. Maya-apiserver exposes OpenEBS operations in form of REST APIs. This allows multiple clients e.g. volume related plugins to consume OpenEBS storage operations exposed by Maya API server. Conclusion Go Kit project should contain packages which are usable, purposeful and portable. Go Kit projects will improve the efficiency of the organization at both human and code level.

23 July 2017

Gregor Herrmann: RC bugs 2017/08-29

long time no blog post. & the stretch release happened without many RC bug fixes from me; in practice, the auto-removals are faster & more convenient. what I nevertheless did in the last months was to fix RC bugs in pkg-perl packages (it still surprises me how fast rotting & constantly moving code is); prepare RC bug fixes for jessie (also for pkg-perl packages); & in the last weeks provide patches & carry out NMUs for perl packages as part of the ongoing perl 5.26 transition.

22 July 2017

Niels Thykier: Improving bulk performance in debhelper

Since debhelper/10.3, there has been a number of performance related changes. The vast majority primarily improves bulk performance or only have visible effects at larger input sizes. Most visible cases are: For debhelper, this mostly involved: How to take advantage of these improvements in tools that use Dh_Lib: Credits: I would like to thank the following for reporting performance issues, regressions or/and providing patches. The list is in no particular order: Should I have missed your contribution, please do not hesitate to let me know.
Filed under: Debhelper, Debian

Niels Thykier: Improving bulk performance in debhelper

Since debhelper/10.3, there has been a number of performance related changes. The vast majority primarily improves bulk performance or only have visible effects at larger input sizes. Most visible cases are: For debhelper, this mostly involved: How to take advantage of these improvements in tools that use Dh_Lib: Credits: I would like to thank the following for reporting performance issues, regressions or/and providing patches. The list is in no particular order: Should I have missed your contribution, please do not hesitate to let me know.
Filed under: Debhelper, Debian

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