[ I meant to finish this article much earlier, but i had to leave it in a half-written draft state for quite some time due to other activities ]
One particular issue that arises with big binary files is that of I/O patterns. It looks like it is not something under the usual scope for both
ld.so and programs/libraries, but it can have a dramatic influence on startup times. My analysis is far from complete, would need to be improved by actually investigating
ld.so code further, and so far has been limited to libxul.so built from mozilla-central, with the help of icegrind, on x86-64 linux.
As I
wrote recently, icegrind allows to track memory accesses within
mmap()ed memory ranges. As
ld.so does
mmap() the program and library binaries, tracking the memory accesses within these
mmap()s allows to get a better idea at I/O patterns when an ELF binary is initialized. I only focused on local accesses within a single given binary file (libxul.so) because the case of Firefox loading many files at startup is already being scrutinized, and because most of the non-Firefox files being read at Firefox startup (system and GNOME libraries) are most likely already in the page cache. I also focused on that because it was an interesting case that could be helpful to understand how big (and maybe less big) binaries may be affected by the toolchain (compiler, linker and dynamic linker) and possibly by some coding practices.
For the record, what I did to get these results is to use
icegrind and elflog, with further additions to the sections file with some output from
objdump -h : I added sections that elflog wouldn t give (such as
.plt,
.hash,
.dynsym, etc.), and even down to the entry level for the
.rela.dyn section. The latter is particularly interesting because icegrind only outputs the first access for any given section. To see sequential accesses within that section, you need to split it in smaller pieces, which I did for
.rela.dyn entries (each one being 24 bytes on x86-64). Uncommenting some parts of the icegrind code was also useful to track where some accesses were made from, code-wise.
Now, the interesting data:
One of the first accesses is a nullification of a few variables within the
.bss section. The
.bss section is usually an anonymous piece of memory, that is, a range of
mmap()ed memory that is not backed by a file, and filled with zeroes by the kernel (I think it even does that lazily). It is used for e.g. variables that are initialized with zeroes in the code, and obviously, any code accessing these variables would be addressing at some offset of the
.bss section. It means the section needs to start in memory at the offset it has been assigned by the linker at build time. This is actually where problems begin.
When the
.bss section offset as assigned by the linker doesn t align on a page (usually 4KB), the
mmap()ed
.bss can t be at that location, and really starts on the next page. The remainder is still
mmap()ed from the binary file, and
ld.so will itself fill that part. As the
.bss section doesn t start on a page boundary, any write at this location will trigger the kernel reading the entire page. This means one of the first set of data being read from the file is the end of the section preceding
.bss, and the beginning of the following one. Most likely, respectively the
.data and
.comment sections.
While this probably doesn t matter much when the binary file is small, when it is big enough, reading in a non sequential manner will trigger hard disk seeks, and we all know how they can hurt performance. Although thankfully, cheap SSDs should be coming some day, in the meanwhile, we still need to cope with the bad performance. The interesting part is, the
.bss section is really empty in the binary file, so its virtual memory address could be anywhere. Why the linker wouldn t align it at a page boundary without having to resort to a linker script is beyond me.
The next accesses go back and forth between
.dynamic,
.gnu.hash,
.dynstr,
.gnu.version_r,
.gnu.version and
.dynsym. These are probably all related to symbol version resolution and DT_NEEDED library loading. While most of these sections are at the beginning of the file (not necessarily in the order they are read from), the
.dynamic section is much nearer to the end, but way before
.data, so that it won t even have been loaded as a by-product of the
.bss section loading.
After that, the
.rela.dyn section is read, and for each relocation entry it contains, the relocations are being applied. Relocations is one of the mechanisms by which position independent code (PIC) is made possible. When a library is loaded in memory, it is not necessarily loaded at the same address every time. The code and data contained in the library thus need to cope with that constraint. Fortunately, while the base address where the library is
mmap()ed in memory is not necessary constant, the offsets of the various sections are still as codified in the binary. The library code can thus directly access data at the right offset if it knows the base offset of the library (which is what is done on the x86 ABI), or if it knows where the current instruction is located (which is what is done on the x86-64 ABI).
Static data (initialized in e.g. a
const or a global variable, or, in C++ case, vtables), on the other hand, may contain pointers to other locations. This is where relocation enters the scene. The
.rela.dyn section contains a set of rules describing where in the binary some pointers need to be adjusted depending on the base library offset (or some other information), and how they should be updated.
ld.so thus reads all
.rela.dyn entries, and applies each relocation, which means that while
.rela.dyn is being read sequentially, reads and writes are also performed at various places of the binary, depending on the content of the
.rela.dyn entries.
This is where this gets ugly for Firefox: there are near 200000 such relocations. On x86-64 an entry is 24 bytes (12 on x86), and each of these is going to read/write a pointer (8 bytes on x86-64, 4 on x86) at some random (though mostly ordered) location. The whole
.rela.dyn section not being read ahead, what actually happens is that it is read in small batches, with seeks and reads of other data at various locations in between. In libxul.so case, this spreads over
.ctors,
.data.rel.ro,
.got, and
.data. The relocation entries are somehow ordered by address to be rewritten, though they occasionally jump backwards. Some of these relocations also appear to be touching to
.gnu.version,
.dynsym and
.dynstr, because their type involves a symbol resolution.
Once
.rela.dyn relocation have been dealt with comes
.rela.plt s turn. The principle is the same for this section: entries describe what kind of relocation must be done where, and how the result must be calculated. The scope of this section, though, is apparently limited to
.got.plt. But before explaining these relocations, I ll explain what happens with the PLT.
The PLT (Procedure Linkage Table) is used when calling functions from external libraries. For example, in a Hello World example, the PLT would be used for calls to the
puts function. The function making the call would in fact call the corresponding PLT location. The PLT itself, on x86 and x86-64, at least, consists of 3 instructions (I ll skip the gory details, especially for x86, where the caller needs to also set some register before calling the PLT). The first instruction is the only one to be called most of the time: it reads the final destination in the
.got.plt section, and jumps there. That final destination, obviously, is not fixed in the library file, since it needs to be resolved by its symbol. This is why the two subsequent instructions exist : originally, the destination stored in the
.got.plt section points back to the second instruction ; the first instruction will effectively be a nop (no operation), and the following instructions will be executed. They will jump into code responsible for symbol resolution, update of the
.got.plt entry for the next call, and call of the real function.
But pointing back to the second instruction is like the pointers in static data we saw above : it s not possible in position independent code. So, the
.rela.plt relocations are actually filling the
.got.plt section with these pointers back to the PLT. There are a tad more than 3000 such relocations.
All these relocations should be going away when prelinking the binaries, but from my several experimentations, it looks like prelinking only avoids relative relocations, and not the others, while it technically could skip all of them.
prelink even properly applies all the relocations in the binary, but executing the binary rewrites the same information at startup for all but relative relocations. That could well be a bug in either
ld.so not skipping enough relocations or
prelink not marking enough relocations to be skipped. I haven t dug deep enough in the code to know how prelinking works exactly. Anyways, prelinking is not a perfect solution, as it also breaks
ASLR. Sure, prelink can randomize library locations, but it relies on the user or a cron job doing so at arbitrary times, but that s far from satisfying.
An interesting thing to note, though, is that a good part of the relocations prelinking doesn t rid us of in libxul.so (more than 25000) are due to the
__cxa_pure_virtual symbol, which is used for, well, pure virtual methods. In other words, virtual methods that don t have an implementation in a given class. The
__cxa_pure_virtual function is set as method in the corresponding field(s) of the class VTABLE in the
.data.rel.ro section. This function is provided by libstdc++, and as such, is dynamically linked. But this function is just a dummy function, doing nothing. Defining an empty
__cxa_pure_virtual function to be included in libxul.so makes these relocations become relative, thus taken care of by prelinking.
After all relocations occur, the library initialization itself can begin, and the content of the
.init section is executed. That section, indirectly, executes all functions stored in the
.ctors section. This includes static initializers, which are unfortunately called backwards, as
Taras pointed out already. Each of these static initializers are also accessing various locations in the
.data or
.bss sections, which may or may not have already been loaded during the relocation phase. The execution of these initializers will also (obviously) read various pieces of the
.text section (despite its name, it contains executable sections, i.e. functions code).
The initialization of the library ends there, and no access should happen until a function from the library is called. In libxul.so case, XRE_main is first called, then many other functions, but that s another story. All that needs to be remembered about the startup process past this point is that the
.text section will be read heavily, as well as the various data, got, plt and dynamic symbol sections, in a very scattered way. While most of these sections may have been retrieved in memory already, as a byproduct of the various initialization processes described above, some may have not, increasing even more the need to seek at all places in the binary file.
Now the main problem with all these I/O patterns at startup, is that it seems the only way reorganizing the binary layout may have a visible impact is by considering
all the above, and not only a part of it, because only addressing a part of it is very likely to only move part of the problem to a different layer.
All in all, making sure the relevant sections of libxul.so are read by the kernel before
ld.so enters the game is a good short-term solution to avoid many seeks at startup.
Romain and I
wrapped up release 0.8.4 of
Rcpp
last Friday. However, given the time of year, it only
appeared on CRAN this morning, and
then only after some prodding as CRAN processing is more or less closed this
week and probably next.
This release builds upon
release 0.8.3.
Highlights include changes to the sugar framework for highly expressive
C++ constructs which gained new vector function as well as a first set of
matrix function. As well, unit tests have been reorganised in such a way that
we end up with a lot fewer compilations (but of several files at once) which reaps
significant speed gains. Date calculation now use the same mktime()
function R itself uses (and which comes from Arthur Olson's tzone library).
The NEWS entry follows below:
Tomorrow, at this time, I'll probably be unsuccessfully trying to find a
comfortable position on a seat of the Bilmanbus to Irun. Very early
on Saturday, as soon as we get off the bus, Maria and I will quickly head to
Hondarribia's beach in Cape Higer to symbolically wet our feet in the waters
of the Cantabrian Sea.
We won't have much time to enjoy the cold waters of the ocean, though.
Soon after that, we'll have to take a deep breath, look East, and start
walking if we want to achieve our utmost objective: take a bath in the
beautiful beaches of the Cap de Creus, in the Mediterranean sea. In between,
30 days and 840 kilometres of thick woods, deep valleys, high peaks and cold
waters, all of which shape incredible landscapes.
Finally we have the same exact features as the upstream precompiled
one. YAY!
Here's the story. 
Looking at it now, that it's all done, it doesn't seem that long.
However, I had to face the infamous 
* Yes. $subject is true!!
We re going to have 
Be there!!
Stay tuned at Wiki page for more update. My blogging frequency is not better nowadays..
Social Micropayment
A social micropayment system allows you to donate a small amount of money (a few pennies/cents) to thank someone else for a good blog post, piece of music, or for a free software that you enjoy. That s what 
The new project shares the same code base, but this branch is a total rewrite of the project children.
Clementine is born on 8th July 2010, at 12:01 Paris time. She is now at home with her mother, father and brother. She is very peaceful and hardly cry once or twice in a day: at bath time and around 5am for her night lunch.
I will probably lack of time in the coming month. Expect some delays with 
Qt 4.7.0 beta 2 and Qt Creator 2.0.0 have been released upstream. There s some
I ve got some interesting results using r1.1 of an example 
From the department of
things-that-I-know-are-possible-but-can-never-remember-how-to-do-so-hey-I-read-the-manpage-and-now-I'm-blogging-it,
I bring you "downloading a directory of photos from a website":