Search Results: "nate"

22 August 2020

Norbert Preining: Converting html to mp4

Such an obvious problem, convert a piece of html/js/css, often with animations, to a video (mp4 or similar). We were just put before this problem for the TUG 2020 online conference. Searching the internet it turned up mostly web services, some of them even with lots of money to pay. At the end (below I will give a short history) it turned out to be rather simple.

The key is to use timesnap, a tool to take screenshots from web pages. It is actively maintained, and internally uses puppeteer, which in turn uses Google Chrome browser headless. This also means that rendering quality is very high. So having an html file available, with all the necessary assets, either online or local, one simply creates enough single screenshots per second so that they can be assembled later on into a video with ffmpeg. In our case, we wanted our leaders to last 10secs before the actual presentation video starts. I decided to render at 30fps, which left me with the simple invocation:
timesnap Leader.html --viewport=1920,1080 --fps=30 --duration=10 --output-pattern="leader-%03d.png"
followed by conversion of the various png images to an mp4:
ffmpeg -r 30 -f image2 -s 1920x1080 -i leader-%03d.png -vcodec libx264 -crf 25 -pix_fmt yuv420p leader.mp4
The -r is the fps, so needs to agree with the --fps above. Also the --viewport and -s values should better agree. -crf is the video quality, and -pix_fmt the pixel format. With that very simple and quick invocation a nice leader video was ready! History It was actually more complicated than normal. For similar problems, it usually takes me about 5min of googling and a bit of scripting, but this time, it was actually a long way. Simply searching for convert html to mp4 doesn t give a lot but web services, often paid for. At some point I came up with the idea to use Electron and led to Electron Recorder, which looked promising, but didn t work. A bit more searching led me to PhantomJS, which is not developed anymore, but there was some explanation how to dump frames using phantomjs and merge them using ffmpeg, very similar to the above. Unfortunately, the rendering of the html page by phantomjs was broken, and thus not usable. Thus I ventured off into searching for alternatives of PhantomJS, which brought me to puppeteer, and from there it wasn t too long a way that pointed me at timesnap. Till now it is surprising to me that such a basic task is neither well documented, so hopefully this page helps some users.

17 August 2020

Ian Jackson: Doctrinal obstructiveness in Free Software

Any software system has underlying design principles, and any software project has process rules. But I seem to be seeing more often, a pathological pattern where abstract and shakily-grounded broad principles, and even contrived and sophistic objections, are used to block sensible changes. Today I will go through an example in detail, before ending with a plea: PostgreSQL query planner, WITH [MATERIALIZED] optimisation fence Background history PostgreSQL has a sophisticated query planner which usually gets the right answer. For good reasons, the pgsql project has resisted providing lots of knobs to control query planning. But there are a few ways to influence the query planner, for when the programmer knows more than the planner. One of these is the use of a WITH common table expression. In pgsql versions prior to 12, the planner would first make a plan for the WITH clause; and then, it would make a plan for the second half, counting the WITH clause's likely output as a given. So WITH acts as an "optimisation fence". This was documented in the manual - not entirely clearly, but a careful reading of the docs reveals this behaviour:
The WITH query will generally be evaluated as written, without suppression of rows that the parent query might discard afterwards.
Users (authors of applications which use PostgreSQL) have been using this technique for a long time. New behaviour in PostgreSQL 12 In PostgreSQL 12 upstream were able to make the query planner more sophisticated. In particular, it is now often capable of looking "into" the WITH common table expression. Much of the time this will make things better and faster. But if WITH was being used for its side-effect as an optimisation fence, this change will break things: queries that ran very quickly in earlier versions might now run very slowly. Helpfully, pgsql 12 still has a way to specify an optimisation fence: specifying WITH ... AS MATERIALIZED in the query. So far so good. Upgrade path for existing users of WITH fence But what about the upgrade path for existing users of the WITH fence behaviour? Such users will have to update their queries to add AS MATERIALIZED. This is a small change. Having to update a query like this is part of routine software maintenance and not in itself very objectionable. However, this change cannnot be made in advance because pgsql versions prior to 12 will reject the new syntax. So the users are in a bit of a bind. The old query syntax can be unuseably slow with the new database and the new syntax is rejected by the old database. Upgrading both the database and the application, in lockstep, is a flag day upgrade, which every good sysadmin will want to avoid. A solution to this problem Colin Watson proposed a very simple solution: make the earlier PostgreSQL versions accept the new MATERIALIZED syntax. This is correct since the new syntax specifies precisely the actual behaviour of the old databases. It has no deleterious effect on any users of older pgsql versions. It makes it possible to add the new syntax to the application, before doing the database upgrade, decoupling the two upgrades. Colin Watson even provided an implementation of this proposal. The solution is rejected by upstream Unfortunately upstream did not accept this idea. You can read the whole thread yourself if you like. But in summary, the objections were (italic indicates literal quotes): I find these extremely unconvincing, even taken together. Many of them are very unattractive things to hear one's upstream saying. At best they are knee-jerk and inflexible application of very general principles. The authors of these objections seem to have lost sight of the fact that these principles have a purpose. When these kind of software principles work against their purposes, they should be revised, or exceptions made. At worst, it looks like a collective effort to find reasons - any reasons, no matter how bad - not to make this change. The OFFSET 0 trick One of the responses in the thread mentions OFFSET 0. As part of writing the queries in the Xen Project CI system, and preparing for our system upgrade, I had carefully read the relevant pgsql documentation. This OFFSET 0 trick was new to me. But, now that I know the answer, it is easy to provide the right search terms and find, for example, this answer on stackmumble. Apparently adding a no-op OFFSET 0 to the subquery defeats the pgsql 12 query planner's ability to see into the subquery.
I think OFFSET 0 is the better approach since it's more obviously a hack showing that something weird is going on, and it's unlikely we'll ever change the optimiser behaviour around OFFSET 0 ... wheras hopefully CTEs will become inlineable at some point CTEs became inlineable by default in PostgreSQL 12.
So in fact there is a syntax for an optimisation fence that is accepted by both earlier and later PostgreSQL versions. It's even recommended by pgsql devs. It's just not documented, and is described by pgsql developers as a "hack". Astonishingly, the fact that it is a "hack" is given as a reason to use it! Well, I have therefore deployed this "hack". No doubt it will stay in our codebase indefinitely. Please don't be like that! I could come up with a lot more examples of other projects that have exhibited similar arrogance. It is becoming a plague! But every example is contentious, and I don't really feel I need to annoy a dozen separate Free Software communities. So I won't make a laundry list of obstructiveness. If you are an upstream software developer, or a distributor of software to users (eg, a distro maintainer), you have a lot of practical power. In theory it is Free Software so your users could just change it themselves. But for a user or downstream, carrying a patch is often an unsustainable amount of work and risk. Most of us have patches we would love to be running, but which we haven't even written because simply running a nonstandard build is too difficult, no matter how technically excellent our delta. As an upstream, it is very easy to get into a mindset of defending your code's existing behaviour, and to turn your project's guidelines into inflexible rules. Constant exposure to users who make silly mistakes, and rudely ask for absurd changes, can lead to core project members feeling embattled. But there is no need for an upstream to feel embattled! You have the vast majority of the power over the software, and over your project communication fora. Use that power consciously, for good. I can't say that arrogance will hurt you in the short term. Users of software with obstructive upstreams do not have many good immediate options. But we do have longer-term choices: we can choose which software to use, and we can choose whether to try to help improve the software we use. After reading Colin's experience, I am less likely to try to help improve the experience of other PostgreSQL users by contributing upstream. It doesn't seem like there would be any point. Indeed, instead of helping the PostgreSQL community I am now using them as an example of bad practice. I'm only half sorry about that.

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16 August 2020

Andrej Shadura: Useful FFmpeg commands for video editing

As a response to Antonio Terceiro s blog post, I m publishing some FFmpeg commands I ve been using recently. Embedding subtitles Sometimes you have a video with subtitles in multiple languages and you don t want to clutter the directory with a lot of similarly-named files or maybe you want to be able to easily transfer the video and subtitles at once. In this case, it may be useful to embed to subtitles directly into the video container file.
ffmpeg -i video.mp4 -i video.eng.srt -map 0:v -map 0:a -c copy -map 1 \
        -c:s:0 mov_text -metadata:s:s:0 language="eng" video-out.mp4
This commands recodes the subtitle file into a format appropriate for the MP4 container and embeds it with a metadata element telling the video player what language it is in. You can add multiple subtitles at once, or you can also transcode the audio to AAC while doing so (I found that a lot of Android devices can t play Ogg Vorbis streams):
ffmpeg -i video.mp4 -i video.deu.srt -i video.eng.srt -map 0:v -map 0:a \
        -c:v copy -c:a aac -map 1 -c:s:0 mov_text -metadata:s:s:0 language="deu" \
                           -map 2 -c:s:1 mov_text -metadata:s:s:1 language="eng" video-out.mp4
Hard subtitles Sometimes you need to play the video with subtitles on devices not supporting them. In that case, it may be useful to hardcode the subtitles directly into the video stream:
ffmpeg -i video.mp4 -vf subtitles=video.eng.srt video-out.mp4
Unfortunately, if you also want to apply more transformations to the video, it starts getting tricky, the -vf option is no longer enough:
ffmpeg -i video.mp4 -i overlay.jpg -filter:a "volume=10" \
        -filter_complex '[0:v][1:v]overlay[outv];[outv]subtitles=video.eng.srt' \
                        video-out.mp4
This command adds an overlay to the video stream (in my case I overlaid a full frame over the original video offering some explanations), increases the volume ten times and adds hard subtitles. P.S. You can see the practical application of the above in this video with a head of one of the electoral commissions in Belarus forcing the members of the staff to manipulate the voting results. I transcribed the video in both Russian and English and encoded the English subtitles into the video.

Gunnar Wolf: DebConf20 talk recorded

Following Antonio Terceiro s post on tips for using ffmpeg for editing video, I will also share a bit of my experience producing my video for my session in DebConf20. I recorded my talk today. As Terceiro mentioned, even though I m used to speaking in front of my webcam (i.e. for my classes and some smaller conferences I ve worked on during the COVID lockdown), it does feel a bit weird to present a live talk to nobody :- OK, one step back. Why are we doing this? Because our hardworking friends of the DebConf20 video team recommended so. In order to minimize connecitvity issues from the variety of speakers throughout the world, we were requested to pre-record the exposition part of our talks, send them to the video team (deadline: today 2020-08-16, in case you still owe yours!), and make sure to be present at the end of the talk for the Q&A session. Of course, for a 45 minute talk, I prepared a 30 minute presentation, saving time for said Q&A session. Anyway, I used the excellent OBS studiolive video mixing/editing program (of course, Debian packages are available. This allowed me to set up several predefined views (combinations and layouts of the presentation, webcam, and maybe some other sources) and professionally and elegantly switch between them on the fly. I am still a newbie with OBS, but I surely see it becoming a part of my day to day streaming. Of course, my setup still was obvious (me looking right every now and then to see or control OBS, as I work on a dual-monitor setup ) Anyway, the experience was very good, much smoother and faster than what I usually have to do when editing video. But just as I was finishing thanking the (future) audience and closing the recording I had to tell the camera, oh, fuck! The button labeled Start Recording Had not been pressed. So, did I just lose 30 minutes of my life, plus a half-decent delivered talk? No, fortunately not. I had previously been playing with OBS, and configured some things. The button I did press was Start Streaming . So, my talk (swearing included, of course) was dutifully streamed over to my YouTube channel. It seems up to five people got a sneak preview as to what will my DebConf participation be (of course, I ve de-listed the video). I pulled it with the always-handy youtube-dl, edited out my curses using kdenlive, and pushed it to the DebConf video server. Oh, make sure you follow the advice for recording presentations. It has all the relevant advice, the settings you should use, and much more welcome information if you are new to this. So Next week, DebConf20! Be there or be square!

15 August 2020

Antonio Terceiro: Useful ffmpeg commands for editing video

For DebConf20, we are recommending that speakers pre-record the presentation part of their talks, and will have live Q&A. We had a smaller online MiniDebConf a couple of months ago, where for instance I had connectivity issues during my talk, so even though it feels too artificial, I guess pre-recording can decrease by a lot the likelihood of a given talk going bad. Paul Gevers and I submitted a short 20 min talk giving an update on autopkgtest, ci.debian.net and friends. We will provide the latest updates on autopkgtest, autodep8, debci, ci.debian.net, and its integration with the Debian testing migration software, britney. We agreed on a split of the content, each one recorded their part, and I offered to join them together. The logical chaining of the topics is such that we can't just concatenate the recordings, so we need to interlace our parts. So I set out to do a full video editing work. I have done this before, although in a simpler way, for one of the MiniDebconfs we held in Curitiba. In that case, it was just cutting the noise at the beginning and the end of the recording, and adding beginning and finish screens with sponsors logos etc. The first issue I noticed was that both our recordings had a decent amount of audio noise. To extract the audio track from the videos, I resorted to How can I extract audio from video with ffmpeg? on Stack Overflow:
ffmpeg -i input-video.avi -vn -acodec copy output-audio.aac
I then edited the audio with Audacity. I passed a noise reduction filter a couple of times, then a compressor filter to amplify my recording on mine, as Paul's already had a good volume. And those are my more advanced audio editing skills, which I acquired doing my own podcast. I now realized I could have just muted the audio tracks from the original clip and align the noise-free audio with it, but I ended up creating new video files with the clean audio. Another member of the Stack Overflow family came to the rescue, in How to merge audio and video file in ffmpeg. To replace the audio stream, we can do something like this:
ffmpeg -i video.mp4 -i audio.wav -c:v copy -c:a aac -map 0:v:0 -map 1:a:0 output.mp4
Paul's recording had a 4:3 aspect ratio, while the requested format is 16:9. This late in the game, there was zero chance I would request him to redo the recording. So I decided to add those black bars on the side to make it the right aspect when showing full screen. And yet again the quickest answer I could find came from the Stack Overflow empire: ffmpeg: pillarbox 4:3 to 16:9:
ffmpeg -i "input43.mkv" -vf "scale=640x480,setsar=1,pad=854:480:107:0" [etc..]
The final editing was done with pitivi, which is what I have used before. I'm a very basic user, but I could do what I needed. It was basically splitting the clips at the right places, inserting the slides as images and aligning them with the video, and making most our video appear small in the corner when presenting the slides. P.S.: all the command lines presented here are examples, basically copied from the linked Q&As, and have to be adapted to your actual input and output formats.

14 August 2020

Markus Koschany: My Free Software Activities in July 2020

Welcome to gambaru.de. Here is my monthly report (+ the first week in August) that covers what I have been doing for Debian. If you re interested in Java, Games and LTS topics, this might be interesting for you. Debian Games
Debian Java Misc Debian LTS This was my 53. month as a paid contributor and I have been paid to work 15 hours on Debian LTS, a project started by Rapha l Hertzog. In that time I did the following: ELTS Extended Long Term Support (ELTS) is a project led by Freexian to further extend the lifetime of Debian releases. It is not an official Debian project but all Debian users benefit from it without cost. The current ELTS release is Debian 8 Jessie . This was my 26. month and I have been paid to work 13,25 hours on ELTS. Thanks for reading and see you next time.

Jonathan Dowland: Generic Haskell

When I did the work described earlier in template haskell, I also explored generic programming in Haskell to solve a particular problem. StrIoT is a program generator: it outputs source code, which may depend upon other modules, which need to be imported via declarations at the top of the source code files. The data structure that StrIoT manipulates contains information about what modules are loaded to resolve the names that have been used in the input code, so we can walk that structure to automatically derive an import list. The generic programming tools I used for this are from Scrap Your Boilerplate (SYB), a module written to complement a paper of the same name. In this code snippet, everything and mkQ are from SYB:
extractNames :: Data a => a -> [Name]
extractNames = everything (++) (\a -> mkQ [] f a)
     where f = (:[])
The input must be any type which implements typeclass Data, as must all its members (and their members etc.): This holds for the Template Haskell Exp types. The output is a normal list of Names. The utility function has a more specific type Name -> [Name]. This is all that's needed to walk over the heterogeneous data structures and do something specific (f) when we encounter a Name. Post-processing the Names to get a list of modules is simple
 nub . catMaybes . map nameModule . concatMap extractNames
Unfortunately, there's a weird GHC behaviour relating to the module names for some Prelude functions that makes the above less useful in practice. For example, the Prelude function words :: String -> [String] can normally be used without an explicit import (since it's a Prelude function). However, once round-tripped through a Name, it becomes GHC.OldList.words. Attempting to import GHC.OldList fails in some contexts, because it's a hidden module or package. I've been meaning to investigate further and, if necessary, file a GHC bug about this. For this reason I've scrapped all the above and gone with a different plan. We go back to requiring the user to specify their required import list explicitly. We then walk over the Exp data type prior to code generation and decanonicalize all the Names. I also use generic programming/SYB to do this:
unQualifyNames :: Exp -> Exp
unQualifyNames = everywhere (\a -> mkT f a)
     where f :: Name -> Name
           f n = if n == '(.)
            then mkName "."
            else (mkName . last . splitOn "." . pprint) n
I've had to special-case composition (.) since that code-point is also used as the delimiter between package, module and function. Otherwise this looks very similar to the earlier function, except using everywhere and mkT (make transformation) instead of everything and mkQ (make query).

Keith Packard: picolibc-news

Picolibc Updates I thought work on picolibc would slow down at some point, but I keep finding more things that need work. I spent a few weeks working in libm and then discovered some important memory allocation bugs in the last week that needed attention too. Cleaning up the Picolibc Math Library Picolibc uses the same math library sources as newlib, which includes code from a range of sources: The original SunPro math code had been split into two levels at some point:
  1. IEEE-754 functions. These offer pure IEEE-754 semantics, including return values and exceptions. They do not set the POSIX errno value. These are all prefixed with __ieee754_ and can be called directly by applications if desired.
  2. POSIX functions. These can offer POSIX semantics, including setting errno and returning expected values when errno is set.
New Code Sponsored by ARM Szabolcs Nagy and Wilco Dijkstra's work in the last few years has been to improve the performance of some of the core math functions, which is much appreciated. They've adopted a more modern coding style (C99) and written faster code at the expense of a larger memory foot print. One interesting choice was to use double computations for the float implementations of various functions. This makes these functions shorter and more accurate than versions done using float throughout. However, for machines which don't have HW double, this pulls in soft double code which adds considerable size to the resulting binary and slows down the computations, especially if the platform does support HW float. The new code also takes advantage of HW fused-multiply-add instructions. Those offer more precision than a sequence of primitive instructions, and so the new code can be much shorter as a result. The method used to detect whether the target machine supported fma operations was slightly broken on 32-bit ARM platforms, where those with 'float' fma acceleration but without 'double' fma acceleration would use the shorter code sequence, but with an emulated fma operation that used the less-precise sequence of operations, leading to significant reductions in the quality of the resulting math functions. I fixed the double fma detection and then also added float fma detection along with implementations of float and double fma for ARM and RISC-V. Now both of those platforms get fma-enhanced math functions where available. Errno Adventures I'd submitted patches to newlib a while ago that aliased the regular math library names to the __ieee754_ functions when the library was configured to not set errno, which is pretty common for embedded environments where a shared errno is a pain anyways. Note the use of the word can in remark about the old POSIX wrapper functions. That's because all of these functions are run-time switchable between _IEEE_ and _POSIX_ mode using the _LIB_VERSION global symbol. When left in the usual _IEEE_ mode, none of this extra code was ever executed, so these wrapper functions never did anything beyond what the underlying __ieee754_ functions did. The new code by Nagy and Dijkstra changed how functions are structured to eliminate the underlying IEEE-754 api. These new functions use tail calls to various __math_ error reporting functions. Those can be configured at library build time to set errno or not, centralizing those decisions in a few functions. The result of this combination of source material is that in the default configuration, some library functions (those written by Nagy and Dijkstra) would set errno and others (the old SunPro code) would not. To disable all errno references, the library would need to be compiled with a set of options, -D_IEEE_LIBM to disable errno in the SunPro code and -DWANT_ERRNO=0 to disable errno in the new code. To enable errno everywhere, you'd set -D_POSIX_MODE to make the default value for _LIB_VERSION be _POSIX_ instead of _IEEE_. To clean all of this up, I removed the run-time _LIB_VERSION variable and made that compile-time. In combination with the earlier work to alias the __ieee754_ functions to the regular POSIX names when _IEEE_LIBM was defined this means that the old SunPro POSIX functions now only get used when _IEEE_LIBM is not defined, and in that case the _LIB_VERSION tests always force use of the errno setting code. In addition, I made the value of WANT_ERRNO depend on whether _IEEE_LIBM was defined, so now a single definition (-D_IEEE_LIBM) causes all of the errno handling from libm to be removed, independent of which code is in use. As part of this work, I added a range of errno tests for the math functions to find places where the wrong errno value was being used. Exceptions As an alternative to errno, C also provides for IEEE-754 exceptions through the fenv functions. These have some significant advantages, including having independent bits for each exception type and having them accumulate instead of sharing errno with a huge range of other C library functions. Plus, they're generally implemented in hardware, so you get exceptions for both library functions and primitive operations. Well, you should get exceptions everywhere, except that the GCC soft float libraries don't support them at all. So, errno can still be useful if you need to know what happened in your library functions when using soft floats. Newlib has recently seen a spate of fenv support being added for various architectures, so I decided that it would be a good idea to add some tests. I added tests for both primitive operations, and then tests for library functions to check both exceptions and errno values. Oddly, this uncovered a range of minor mistakes in various math functions. Lots of these were mistakes in the SunPro POSIX wrapper functions where they modified the return values from the __ieee754_ implementations. Simply removing those value modifications fixed many of those errors. Fixing Memory Allocator bugs Picolibc inherits malloc code from newlib which offers two separate implementations, one big and fast, the other small and slow(er). Selecting between them is done while building the library, and as Picolibc is expected to be used on smaller systems, the small and slow one is the default. Contributed by someone from ARM back in 2012/2013, nano-mallocr reminds me of the old V7 memory allocator. A linked list, sorted in address order, holds discontiguous chunks of available memory. Allocation is done by searching for a large enough chunk in the list. The first one large enough is selected, and if it is large enough, a chunk is split off and left on the free list while the remainder is handed to the application. When the list doesn't have any chunk large enough, sbrk is called to get more memory. Free operations involve walking the list and inserting the chunk in the right location, merging the freed memory with any immediately adjacent chunks to reduce fragmentation. The size of each chunk is stored just before the first byte of memory used by the application, where it remains while the memory is in use and while on the free list. The free list is formed by pointers stored in the active area of the chunk, so the only overhead for chunks in use is the size field. Something Something Padding To deal with the vagaries of alignment, the original nano-mallocr code would allow for there to be 'padding' between the size field and the active memory area. The amount of padding could vary, depending on the alignment required for a particular chunk (in the case of memalign, that padding can be quite large). If present, nano-mallocr would store the padding value in the location immediately before the active area and distinguish that from a regular size field by a negative sign. The whole padding thing seems mysterious to me -- why would it ever be needed when the allocator could simply create chunks that were aligned to the required value and a multiple of that value in size. The only use I could think of was for memalign; adding this padding field would allow for less over-allocation to find a suitable chunk. I didn't feel like this one (infrequent) use case was worth the extra complexity; it certainly caused me difficulty in reading the code. A Few Bugs In reviewing the code, I found a couple of easy-to-fix bugs. Time For Testing Once I had uncovered a few bugs in this code, I decided that it would be good to write a few tests to exercise the API. With the tests running on four architectures in nearly 60 variants, it seemed like I'd be able to uncover at least a few more failures: These new tests did find bugs. But not where I expected them. Which is why I'm so fond of testing. GCC Optimizations One of my tests was to call calloc and make sure it returned a chunk of memory that appeared to work or failed with a reasonable value. To my surprise, on aarch64, that test never finished. It worked elsewhere, but on that architecture it hung in the middle of calloc itself. Which looked like this:
void * nano_calloc(malloc_size_t n, malloc_size_t elem)
 
    ptrdiff_t bytes;
    void * mem;
    if (__builtin_mul_overflow (n, elem, &bytes))
     
    RERRNO = ENOMEM;
    return NULL;
     
    mem = nano_malloc(bytes);
    if (mem != NULL) memset(mem, 0, bytes);
    return mem;
 
Note the naming here -- nano_mallocr uses nano_ prefixes in the code, but then uses #defines to change their names to those expected in the ABI. (No, I don't understand why either). However, GCC sees the real names and has some idea of what these functions are supposed to do. In particular, the pattern:
foo = malloc(n);
if (foo) memset(foo, '\0', n);
is converted into a shorter and semantically equivalent:
foo = calloc(n, 1);
Alas, GCC doesn't take into account that this optimization is occurring inside of the implementation of calloc. Another sequence of code looked like this:
chunk->size = foo
nano_free((char *) chunk + CHUNK_OFFSET);
Well, GCC knows that the content of memory passed to free cannot affect the operation of the application, and so it converted this into:
nano_free((char *) chunk + CHUNK_OFFSET);
Remember that nano_mallocr stores the size of the chunk just before the active memory. In this case, nano_mallocr was splitting a large chunk into two pieces, setting the size of the left-over part and placing that on the free list. Failing to set that size value left whatever was there before for the size and usually resulted in the free list becoming quite corrupted. Both of these problems can be corrected by compiling the code with a couple of GCC command-line switches (-fno-builtin-malloc and -fno-builtin-free). Reworking Malloc Having spent this much time reading through the nano_mallocr code, I decided to just go through it and make it easier for me to read today, hoping that other people (which includes 'future me') will also find it a bit easier to follow. I picked a couple of things to focus on:
  1. All newly allocated memory should be cleared. This reduces information disclosure between whatever code freed the memory and whatever code is about to use the memory. Plus, it reduces the effect of un-initialized allocations as they now consistently get zeroed memory. Yes, this masks bugs. Yes, this goes slower. This change is dedicated to Kees Cook, but please blame me for it not him.
  2. Get rid of the 'Padding' notion. Every time I read this code it made my brain hurt. I doubt I'll get any smarter in the future.
  3. Realloc could use some love, improving its efficiency in common cases to reduce memory usage.
  4. Reworking linked list walking. nano_mallocr uses a singly-linked free list and open-codes all list walking. Normally, I'd switch to a library implementation to avoid introducing my own bugs, but in this fairly simple case, I think it's a reasonable compromise to open-code the list operations using some patterns I learned while working at MIT from Bob Scheifler.
  5. Discover necessary values, like padding and the limits of the memory space, from the environment rather than having them hard-coded.
Padding To get rid of 'Padding' in malloc, I needed to make sure that every chunk was aligned and sized correctly. Remember that there is a header on every allocated chunk which is stored before the active memory which contains the size of the chunk. On 32-bit machines, that size is 4 bytes. If the machine requires allocations to be aligned on 8-byte boundaries (as might be the case for 'double' values), we're now going to force the alignment of the header to 8-bytes, wasting four bytes between the size field and the active memory. Well, the existing nano_mallocr code also wastes those four bytes to store the 'padding' value. Using a consistent alignment for chunk starting addresses and chunk sizes has made the code a lot simpler and easier to reason about while not using extra memory for normal allocation. Except for memalign, which I'll cover in the next section. realloc The original nano_realloc function was as simple as possible:
mem = nano_malloc(new_size);
if (mem)  
    memcpy(mem, old, MIN(old_size, new_size));
    nano_free(old);
 
return mem;
However, this really performs badly when the application is growing a buffer while accumulating data. A couple of simple optimizations occurred to me:
  1. If there's a free chunk just after the original location, it could be merged to the existing block and avoid copying the data.
  2. If the original chunk is at the end of the heap, call sbrk() to increase the size of the chunk.
The second one seems like the more important case; in a small system, the buffer will probably land at the end of the heap at some point, at which point growing it to the size of available memory becomes quite efficient. When shrinking the buffer, instead of allocating new space and copying, if there's enough space being freed for a new chunk, create one and add it to the free list. List Walking Walking singly-linked lists seem like one of the first things we see when learning pointer manipulation in C:
for (element = head; element; element = element->next)
    do stuff ...
However, this becomes pretty complicated when 'do stuff' includes removing something from the list:
prev = NULL;
for (element = head; element; element = element->next)
    ...
    if (found)
        break;
    ...
    prev = element
if (prev != NULL)
    prev->next = element->next;
else
    head = element->next;
An extra variable, and a test to figure out how to re-link the list. Bob showed me a simpler way, which I'm sure many people are familiar with:
for (ptr = &head; (element = *ptr); ptr = &(element->next))
    ...
    if (found)
        break;
*ptr = element->next;
Insertion is similar, as you would expect:
for (ptr = &head; (element = *ptr); ptr = &(element->next))
    if (found)
        break;
new_element->next = element;
*ptr = new_element;
In terms of memory operations, it's the same -- each 'next' pointer is fetched exactly once and the list is re-linked by performing a single store. In terms of reading the code, once you've seen this pattern, getting rid of the extra variable and the conditionals around the list update makes it shorter and less prone to errors. In the nano_mallocr code, instead of using 'prev = NULL', it actually used 'prev = free_list', and the test for updating the head was 'prev == element', which really caught me unawares. System Parameters Any malloc implementation needs to know a couple of things about the system it's running on:
  1. Address space. The maximum range of possible addresses sets the limit on how large a block of memory might be allocated, and hence the size of the 'size' field. Fortunately, we've got the 'size_t' type for this, so we can just use that.
  2. Alignment requirements. These derive from the alignment requirements of the basic machine types, including pointers, integers and floating point numbers which are formed from a combination of machine requirements (some systems will fault if attempting to use memory with the wrong alignment) along with a compromise between memory usage and memory system performance.
I decided to let the system tell me the alignment necessary using a special type declaration and the 'offsetof' operation:
typedef struct  
    char c;
    union  
    void *p;
    double d;
    long long ll;
    size_t s;
      u;
  align_t;
#define MALLOC_ALIGN        (offsetof(align_t, u))
Because C requires struct fields to be stored in order of declaration, the 'u' field would have to be after the 'c' field, and would have to be assigned an offset equal to the largest alignment necessary for any of its members. Testing on a range of machines yields the following alignment requirements:
Architecture Alignment
x86_64 8
RISC-V 8
aarch64 8
arm 8
x86 4
So, I guess I could have just used a constant value of '8' and not worried about it, but using the compiler-provided value means that running picolibc on older architectures might save a bit of memory at no real cost in the code. Now, the header containing the 'size' field can be aligned to this value, and all allocated blocks can be allocated in units of this value. memalign memalign, valloc and pvalloc all allocate memory with restrictions on the alignment of the base address and length. You'd think these would be simple -- allocate a large chunk, align within that chunk and return the address. However, they also all require that the address can be successfully passed to free. Which means that the allocator needs to do some tricks to make it all work. Essentially, you allocate 'lots' of memory and then arrange that any bytes at the head and tail of the allocation can be returned to the free list. The tail part is easy; if it's large enough to form a free chunk (which must contain the size and a 'next' pointer for the free list), it can be split off. Otherwise, it just sits at the end of the allocation being wasted space. The head part is a bit tricky when it's not large enough to form a free chunk. That's where the 'padding' business came in handy; that can be as small as a 'size_t' value, which (on 32-bit systems) is only four bytes. Now that we're giving up trying to reason about 'padding', any extra block at the start must be big enough to hold a free block, which includes the size and a next pointer. On 32-bit systems, that's just 8 bytes which (for most of our targets) is the same as the alignment value we're using. On 32-bit systems that can use 4-byte alignment, and on 64-bit systems, it's possible that the alignment required by the application for memalign and the alignment of a chunk returned by malloc might be off by too small an amount to create a free chunk. So, we just allocate a lot of extra space; enough so that we can create a block of size 'toosmall + align' at the start and create a free chunk of memory out of that. This works, and at least returns all of the unused memory back for other allocations. Sending Patches Back to Newlib I've sent the floating point fixes upstream to newlib where they've already landed on master. I've sent most of the malloc fixes, but I'm not sure they really care about seeing nano_mallocr refactored. If they do, I'll spend the time necessary to get the changes ported back to the newlib internal APIs and merged upstream.

12 August 2020

Michael Stapelberg: Optional dependencies don t work

In the i3 projects, we have always tried hard to avoid optional dependencies. There are a number of reasons behind it, and as I have recently encountered some of the downsides of optional dependencies firsthand, I summarized my thoughts in this article.

What is a (compile-time) optional dependency? When building software from source, most programming languages and build systems support conditional compilation: different parts of the source code are compiled based on certain conditions. An optional dependency is conditional compilation hooked up directly to a knob (e.g. command line flag, configuration file, ), with the effect that the software can now be built without an otherwise required dependency. Let s walk through a few issues with optional dependencies.

Inconsistent experience in different environments Software is usually not built by end users, but by packagers, at least when we are talking about Open Source. Hence, end users don t see the knob for the optional dependency, they are just presented with the fait accompli: their version of the software behaves differently than other versions of the same software. Depending on the kind of software, this situation can be made obvious to the user: for example, if the optional dependency is needed to print documents, the program can produce an appropriate error message when the user tries to print a document. Sometimes, this isn t possible: when i3 introduced an optional dependency on cairo and pangocairo, the behavior itself (rendering window titles) worked in all configurations, but non-ASCII characters might break depending on whether i3 was compiled with cairo. For users, it is frustrating to only discover in conversation that a program has a feature that the user is interested in, but it s not available on their computer. For support, this situation can be hard to detect, and even harder to resolve to the user s satisfaction.

Packaging is more complicated Unfortunately, many build systems don t stop the build when optional dependencies are not present. Instead, you sometimes end up with a broken build, or, even worse: with a successful build that does not work correctly at runtime. This means that packagers need to closely examine the build output to know which dependencies to make available. In the best case, there is a summary of available and enabled options, clearly outlining what this build will contain. In the worst case, you need to infer the features from the checks that are done, or work your way through the --help output. The better alternative is to configure your build system such that it stops when any dependency was not found, and thereby have packagers acknowledge each optional dependency by explicitly disabling the option.

Untested code paths bit rot Code paths which are not used will inevitably bit rot. If you have optional dependencies, you need to test both the code path without the dependency and the code path with the dependency. It doesn t matter whether the tests are automated or manual, the test matrix must cover both paths. Interestingly enough, this principle seems to apply to all kinds of software projects (but it slows down as change slows down): one might think that important Open Source building blocks should have enough users to cover all sorts of configurations. However, consider this example: building cairo without libxrender results in all GTK application windows, menus, etc. being displayed as empty grey surfaces. Cairo does not fail to build without libxrender, but the code path clearly is broken without libxrender.

Can we do without them? I m not saying optional dependencies should never be used. In fact, for bootstrapping, disabling dependencies can save a lot of work and can sometimes allow breaking circular dependencies. For example, in an early bootstrapping stage, binutils can be compiled with --disable-nls to disable internationalization. However, optional dependencies are broken so often that I conclude they are overused. Read on and see for yourself whether you would rather commit to best practices or not introduce an optional dependency.

Best practices If you do decide to make dependencies optional, please:
  1. Set up automated testing for all code path combinations.
  2. Fail the build until packagers explicitly pass a --disable flag.
  3. Tell users their version is missing a dependency at runtime, e.g. in --version.

11 August 2020

Dirk Eddelbuettel: RcppSimdJson 0.1.1: More Features

A first update following for the exciting RcppSimdJson 0.1.0 release last month is now on CRAN. Version 0.1.1 brings further enhancements such direct parsing of raw chars, working with compressed files as well as much expanded querying ability all thanks to Brendan, some improvements to our demos thanks to Daniel as well as a small fix via a one-liner borrowed from upstream for a reported UBSAN issue. RcppSimdJson wraps the fantastic and genuinely impressive simdjson library by Daniel Lemire and collaborators. Via very clever algorithmic engineering to obtain largely branch-free code, coupled with modern C++ and newer compiler instructions, it results in parsing gigabytes of JSON parsed per second which is quite mindboggling. The best-case performance is faster than CPU speed as use of parallel SIMD instructions and careful branch avoidance can lead to less than one cpu cycle use per byte parsed; see the video of the talk by Daniel Lemire at QCon (also voted best talk). The detailed list of changes follows.

Changes in version 0.1.1 (2020-08-10)
  • Corrected incorrect file deletion when mixing local and remote files (Brendan in #34) closing #33.
  • Added support for raw vectors, compressed files, and compressed downloads (Dirk and Brendan in #36, #39, and #45 closing #35 and addressing issues raised in #40 and #44).
  • Examples in two demos are now more self-sufficient (Daniel Lemire and Dirk in #42).
  • Expanded query functionality to include single, flat, and nested queries (Brendan in #45 closing #43).
  • Split error handling parameters from error_ok/on_error into parse_error_ok/on_parse_error and query_error_ok/on_query_error (Brendan in #45).
  • One-line upstream change to address sanitizer error on cast.

Courtesy of CRANberries, there is also a diffstat report for this release. For questions, suggestions, or issues please use the issue tracker at the GitHub repo. If you like this or other open-source work I do, you can now sponsor me at GitHub. For the first year, GitHub will match your contributions.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

10 August 2020

Dirk Eddelbuettel: nanotime 0.3.1: Misc Build Fixes for Yuge New Features!

The nanotime 0.3.0 release four days ago was so exciting that we decided to do it again! Kidding aside, and fairly extensive tests notwithstanding we were bitten by a few build errors: who knew clang on macOS needed extra curlies to be happy, another manifestation of Solaris having no idea what a timezone setting America/New_York is, plus some extra pickyness from the SAN tests and whatnot. So Leonardo and I gave it some extra care over the weekend, uploaded it late yesterday and here we are with 0.3.1. Thanks again to CRAN for prompt processing even though they are clearly deluged shortly before their (brief) summer break. nanotime relies on the RcppCCTZ package for (efficient) high(er) resolution time parsing and formatting up to nanosecond resolution, and the bit64 package for the actual integer64 arithmetic. Initially implemented using the S3 system, it has benefitted greatly from work by Leonardo Silvestri who rejigged internals in S4 and now added new types for periods, intervals and durations. The NEWS snippet adds full details.

Changes in version 0.3.1 (2020-08-09)
  • Several small cleanups to ensure a more robust compilation (Leonardo and Dirk in #75 fixing #74).
  • Show Solaris some extra love by skipping tests and examples with a timezone (Dirk in #76).

Thanks to CRANberries there is also a diff to the previous version. More details and examples are at the nanotime page; code, issue tickets etc at the GitHub repository. If you like this or other open-source work I do, you can now sponsor me at GitHub. For the first year, GitHub will match your contributions.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

8 August 2020

Jelmer Vernooij: Improvements to Merge Proposals by the Janitor

The Debian Janitor is an automated system that commits fixes for (minor) issues in Debian packages that can be fixed by software. It gradually started proposing merges in early December. The first set of changes sent out ran lintian-brush on sid packages maintained in Git. This post is part of a series about the progress of the Janitor. Since the original post, merge proposals created by the janitor now include the debdiff between a build with and without the changes (showing the impact to the binary packages), in addition to the merge proposal diff (which shows the impact to the source package). New merge proposals also include a link to the diffoscope diff between a vanilla build and the build with changes. Unfortunately these can be a bit noisy for packages that are not reproducible yet, due to the difference in build environment between the two builds. This is part of the effort to keep the changes from the janitor high-quality. The rollout surfaced some bugs in lintian-brush; these have been either fixed or mitigated (e.g. by disabling specified fixers).

For more information about the Janitor's lintian-fixes efforts, see the landing page

Dirk Eddelbuettel: RVowpalWabbit 0.0.15: Some More CRAN Build Issues

Another maintenance RVowpalWabbit package update brought us to version 0.0.15 earlier today. We attempted to fix one compilation error on Solaris, and addressed a few SAN/UBSAN issues with the gcc build. As noted before, there is a newer package rvw based on the excellent GSoC 2018 and beyond work by Ivan Pavlov (mentored by James and myself) so if you are into Vowpal Wabbit from R go check it out. CRANberries provides a summary of changes to the previous version. More information is on the RVowpalWabbit page. Issues and bugreports should go to the GitHub issue tracker. If you like this or other open-source work I do, you can now sponsor me at GitHub. For the first year, GitHub will match your contributions.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

7 August 2020

Antonio Terceiro: When community service providers fail

I'm starting a new blog, and instead of going into the technical details on how it's made, or on how I migrated my content from the previous ones, I want focus on why I did it. It's been a while since I have written a blog post. I wanted to get back into it, but also wanted to finally self-host my blog/homepage because I have been let down before. And sadly, I was not let down by a for-profit, privacy invading corporation, but by a free software organization. The sad story of wiki.softwarelivre.org My first blog that was hosted in a blog engine written by me, which was hosted in a TWiki, and later Foswiki instance previously available at wiki.softwarelivre.org, hosted by ASL.org. I was the one who introduced the tool to the organization in the first place. I had come from a previous, very fruitful experience on the use of wikis for creation of educational material while in university, which ultimately led me to become a core TWiki, and then Foswiki developer. In 2004, I had just moved to Porto Alegre, got involved in ASL.org, and there was a demand for a tool like that. 2 years later, I left Porto Alegre, and some time after that the daily operations of ASL.org when it became clear that it was not really prepared for remote participation. I was still maintaing the wiki software and the OS for quite some years after, until I wasn't anymore. In 2016, the server that hosted it went haywire, and there were no backups. A lot of people and free software groups lost their content forever. My blog was the least important content in there. To mention just a few examples, here are some groups that lost their content in there: Some of this can still be reached via the Internet Archive Wayback Machine, but that is only useful for recovering content, not for it to be used by the public. The announced tragedy of softwarelivre.org My next blog after that was hosted at softwarelivre.org, a Noosfero instance also hosted by ASL.org. When it was introduced in 2010, this Noosfero instance became responsible for the main domain softwarelivre.org name. This was a bold move by ASL.org, and was a demonstration of trust in a local free software project, led by a local free software cooperative (Colivre). I was a lead developer in the Noosfero project for a long time, and I was also involved in maintaining that server as well. However, for several years there is little to no investment in maintaining that service. I already expect that it will probably blow up at some point as the wiki did, or that it may be just shut down on purpose. On the responsibility of organizations Today, a large part of wast mot people consider "the internet" is controlled by a handful of corporations. Most popular services on the internet might look like they are gratis (free as in beer), but running those services is definitely not without costs. So when you use services provided by for-profit companies and are not paying for them with money, you are paying with your privacy and attention. Society needs independent organizations to provide alternatives. The market can solve a part of the problem by providing ethical services and charging for them. This is legitimate, and as long as there is transparency about how peoples' data and communications are handled, there is nothing wrong with it. But that only solves part of the problem, as there will always be people who can't afford to pay, and people and communities who can afford to pay, but would rather rely on a nonprofit. That's where community-based services, provided by nonprofits, are also important. We should have more of them, not less. So it makes me worry to realize ASL.org left the community in the dark. Losing the wiki wasn't even the first event of its kind, as the listas.softwarelivre.org mailing list server, with years and years of community communications archived in it, broke with no backups in 2012. I do not intend to blame the ASL.org leadership personally, they are all well meaning and good people. But as an organization, it failed to recognize the importance of this role of service provider. I can even include myself in it: I was member of the ASL.org board some 15 years ago; I was involved in the deployment of both the wiki and Noosfero, the former as a volunteer and the later professionally. Yet, I did nothing to plan the maintenance of the infrastructure going forward. When well meaning organizations fail, people who are not willing to have their data and communications be exploited for profit are left to their own devices. I can afford a virtual private server, and have the technical knowledge to import my old content into a static website generator, so I did it. But what about all the people who can't, or don't? Of course, these organizations have to solve the challenge of being sustainable, and being able to pay professionals to maintain the services that the community relies on. We should be thankful to these organizations, and their leadership needs to recognize the importance of those services, and actively plan for them to be kept alive.

Antonio Terceiro: When community service providers fail

I'm starting a new blog, and instead of going into the technical details on how it's made, or on how I migrated my content from the previous ones, I want to focus on why I did it. It's been a while since I have written a blog post. I wanted to get back into it, but also wanted to finally self-host my blog/homepage because I have been let down before. And sadly, I was not let down by a for-profit, privacy invading corporation, but by a free software organization. The sad story of wiki.softwarelivre.org My first blog that was hosted in a blog engine written by me, which was hosted in a TWiki, and later Foswiki instance previously available at wiki.softwarelivre.org, hosted by ASL.org. I was the one who introduced the tool to the organization in the first place. I had come from a previous, very fruitful experience on the use of wikis for creation of educational material while in university, which ultimately led me to become a core TWiki, and then Foswiki developer. In 2004, I had just moved to Porto Alegre, got involved in ASL.org, and there was a demand for a tool like that. 2 years later, I left Porto Alegre, and some time after that the daily operations of ASL.org when it became clear that it was not really prepared for remote participation. I was still maintaing the wiki software and the OS for quite some years after, until I wasn't anymore. In 2016, the server that hosted it went haywire, and there were no backups. A lot of people and free software groups lost their content forever. My blog was the least important content in there. To mention just a few examples, here are some groups that lost their content in there: Some of this can still be reached via the Internet Archive Wayback Machine, but that is only useful for recovering content, not for it to be used by the public. The announced tragedy of softwarelivre.org My next blog after that was hosted at softwarelivre.org, a Noosfero instance also hosted by ASL.org. When it was introduced in 2010, this Noosfero instance became responsible for the main domain softwarelivre.org name. This was a bold move by ASL.org, and was a demonstration of trust in a local free software project, led by a local free software cooperative (Colivre). I was a lead developer in the Noosfero project for a long time, and I was also involved in maintaining that server as well. However, for several years there is little to no investment in maintaining that service. I already expect that it will probably blow up at some point as the wiki did, or that it may be just shut down on purpose. On the responsibility of organizations Today, a large part of wast mot people consider "the internet" is controlled by a handful of corporations. Most popular services on the internet might look like they are gratis (free as in beer), but running those services is definitely not without costs. So when you use services provided by for-profit companies and are not paying for them with money, you are paying with your privacy and attention. Society needs independent organizations to provide alternatives. The market can solve a part of the problem by providing ethical services and charging for them. This is legitimate, and as long as there is transparency about how peoples' data and communications are handled, there is nothing wrong with it. But that only solves part of the problem, as there will always be people who can't afford to pay, and people and communities who can afford to pay, but would rather rely on a nonprofit. That's where community-based services, provided by nonprofits, are also important. We should have more of them, not less. So it makes me worry to realize ASL.org left the community in the dark. Losing the wiki wasn't even the first event of its kind, as the listas.softwarelivre.org mailing list server, with years and years of community communications archived in it, broke with no backups in 2012. I do not intend to blame the ASL.org leadership personally, they are all well meaning and good people. But as an organization, it failed to recognize the importance of this role of service provider. I can even include myself in it: I was member of the ASL.org board some 15 years ago; I was involved in the deployment of both the wiki and Noosfero, the former as a volunteer and the later professionally. Yet, I did nothing to plan the maintenance of the infrastructure going forward. When well meaning organizations fail, people who are not willing to have their data and communications be exploited for profit are left to their own devices. I can afford a virtual private server, and have the technical knowledge to import my old content into a static website generator, so I did it. But what about all the people who can't, or don't? Of course, these organizations have to solve the challenge of being sustainable, and being able to pay professionals to maintain the services that the community relies on. We should be thankful to these organizations, and their leadership needs to recognize the importance of those services, and actively plan for them to be kept alive.

6 August 2020

Dirk Eddelbuettel: nanotime 0.3.0: Yuge New Features!

A fresh major release of the nanotime package for working with nanosecond timestamps is hitting CRAN mirrors right now. nanotime relies on the RcppCCTZ package for (efficient) high(er) resolution time parsing and formatting up to nanosecond resolution, and the bit64 package for the actual integer64 arithmetic. Initially implemented using the S3 system, it has benefitted greatly from work by Leonardo Silvestri who rejigged internals in S4 and now added new types for periods, intervals and durations. This is what is commonly called a big fucking deal!! So a really REALLY big thank you to my coauthor Leonardo for all these contributions. With all these Yuge changes patiently chisseled in by Leonardo, it took some time since the last release and a few more things piled up. Matt Dowle corrected something we borked for integration with the lovely and irreplacable data.table. We also switched to the awesome yet minimal tinytest package by Mark van der Loo, and last but not least we added the beginnings of a proper vignette currently at nine pages but far from complete. The NEWS snippet adds full details.

Changes in version 0.3.0 (2020-08-06)
  • Use tzstr= instead of tz= in call to RcppCCTZ::parseDouble()) (Matt Dowle in #49).
  • Add new comparison operators for nanotime and charcters (Dirk in #54 fixing #52).
  • Switch from RUnit to tinytest (Dirk in #55)
  • Substantial functionality extension in with new types nanoduration, nanoival and nanoperiod (Leonardo in #58, #60, #62, #63, #65, #67, #70 fixing #47, #51, #57, #61, #64 with assistance from Dirk).
  • A new (yet still draft-ish) vignette was added describing the four core types (Leonardo and Dirk in #71).
  • A required compilation flag for Windows was added (Leonardo in #72).
  • RcppCCTZ function are called in new 'non-throwing' variants to not trigger exeception errors (Leonardo in #73).

We also have a diff to the previous version thanks to CRANberries. More details and examples are at the nanotime page; code, issue tickets etc at the GitHub repository. If you like this or other open-source work I do, you can now sponsor me at GitHub. For the first year, GitHub will match your contributions.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

5 August 2020

Dirk Eddelbuettel: RcppCCTZ 0.2.8: Minor API Extension

A new minor release 0.2.8 of RcppCCTZ is now on CRAN. RcppCCTZ uses Rcpp to bring CCTZ to R. CCTZ is a C++ library for translating between absolute and civil times using the rules of a time zone. In fact, it is two libraries. One for dealing with civil time: human-readable dates and times, and one for converting between between absolute and civil times via time zones. And while CCTZ is made by Google(rs), it is not an official Google product. The RcppCCTZ page has a few usage examples and details. This package was the first CRAN package to use CCTZ; by now at least three others do using copies in their packages which remains less than ideal. This version adds three no throw variants of three existing functions, contributed again by Leonardo. This will be used in an upcoming nanotime release which we are finalising now.

Changes in version 0.2.8 (2020-08-04)
  • Added three new nothrow variants (for win32) needed by the expanded nanotime package (Leonardo in #37)

We also have a diff to the previous version thanks to CRANberries. More details are at the RcppCCTZ page; code, issue tickets etc at the GitHub repository. If you like this or other open-source work I do, you can now sponsor me at GitHub. For the first year, GitHub will match your contributions.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

4 August 2020

Osamu Aoki: exim4 configuration for Desktop (better gmail support)

Since gmail rewrites "From:" address now (2020) and keep changing access limitation, it is wise not to use it as smarthost any more. (If you need to access multiple gmail addresses from mutt etc, use esmtp etc.)

---
For most of our Desktop PC running with stock exim4 and mutt, I think sending out mail is becoming a bit rough since using random smarthost causes lots of trouble due to the measures taken to prevent spams.

As mentioned in Exim4 user FAQ , /etc/hosts should have FQDN with external DNS resolvable domain name listed instead of localdomain to get the correct EHLO/HELO line. That's the first step.

The stock configuration of exim4 only allows you to use single smarthost for all your mails. I use one address for my personal use which is checked by my smartphone too. The other account is for subscribing to the mailing list. So I needed to tweak ...

Usually, mutt is smart enough to set the From address since my .muttrc has

# Set default for From: for replyes for alternates.
set reverse_name

So how can I teach exim4 to send mails depending on the mail accounts listed in the From header.

For my gmail accounts, each mail should be sent to the account specific SMTP connection matching your From header to get all the modern SPAM protection data in right state. DKIM, SPF, DMARC... (Besides, they overwrite From: header anyway if you use wrong connection.)

For my debian.org mails, mails should be sent from my shell account on people.debian.org so it is very unlikely to be blocked. Sometimes, I wasn't sure some of these debian.org mails sent through my ISP's smarthost are really getting to the intended person.

To these ends, I have created small patches to the /etc/exim4/conf.d files and reported it to Debian BTS: #869480 Support multiple smarthosts (gmail support). These patches are for the source package.

To use my configuration tweak idea, you have easier route no matter which exim version you are using. Please copy and read pertinent edited files from my github site to your installed /etc/exim4/conf.d files and get the benefits.
If you really wish to keep envelope address etc. to match From: header, please rewite agressively using the From: header using eddited rewrite/31_exim4-config_rewriting as follows:

 .ifndef NO_EAA_REWRITE_REWRITE
*@+local_domains "$ lookup $ local_part lsearch /etc/email-addresses \
$value fail " f
# identical rewriting rule for /etc/mailname
*@ETC_MAILNAME "$ lookup $ local_part lsearch /etc/email-addresses \
$value fail " f
.endif
* "$h_from:" Frs

So far its working fine for me but if you find bug, let me know.

Osamu

1 August 2020

Andrew Cater: Debian 10.5 Buster point release 20200801 - all of the fixes :)

The point release is happening today for Debian Buster 10.5. This is an important release because it incorporates all the recent security fixes from the latest GRUB / Secure Boot "Boothole" security problems.

Behind the scenes, there has been a lot of work to get this right: a release subject to an embargo to allow all the Linux releases to co-ordinate this as far as possible, lots of consistent effort, lots of cooperation - the very best of Free/Libre/Open Source working together.

Secure Boot shims are signed with a different key to go to upstream this time around: in due course, when revocation of old, insecure code happens to plug the security hole, older media may be deny-listed. All the updates for all the affected packages (listed in https://www.debian.org/security/2020-GRUB-UEFI-SecureBoot/ ) are included in this release.

This has been a major wake-up call: the work behind the scenes has meant that each affected Linux distribution will be in a much better position going forward and working together is always good.

31 July 2020

Reproducible Builds (diffoscope): diffoscope 154 released

The diffoscope maintainers are pleased to announce the release of diffoscope version 154. This version includes the following changes:
[ Chris Lamb ]
* Add support for F2FS filesystems.
  (Closes: reproducible-builds/diffoscope#207)
* Allow "--profile" as a synonym for "--profile=-".
* Add an add_comment helper method so don't mess with our _comments list
  directly.
* Add missing bullet point in a previous changelog entry.
* Use "human-readable" over unhyphenated version.
* Add a bit more debugging around launching guestfs.
* Profile the launch of guestfs filesystems.
* Correct adding a comment when we cannot extract a filesystem due to missing
  guestfs module.
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