Search Results: "cas"

7 July 2023

Dirk Eddelbuettel: Rcpp 1.0.11 on CRAN: Updates and Maintenance

rcpp logo The Rcpp Core Team is delighted to announce that the newest release 1.0.11 of the Rcpp package arrived on CRAN and in Debian earlier today. Windows and macOS builds should appear at CRAN in the next few days, as will builds in different Linux distribution and of course at r2u. The release was finalized three days ago, but given the widespread use and extended reverse dependencies at CRAN it usually takes a few days to be processed. This release continues with the six-months January-July cycle started with release 1.0.5 in July 2020. As a reminder, we do of course make interim snapshot dev or rc releases available via the Rcpp drat repo and strongly encourage their use and testing I run my systems with these versions which tend to work just as well, and are also fully tested against all reverse-dependencies. Rcpp has long established itself as the most popular way of enhancing R with C or C++ code. Right now, 2720 packages on CRAN depend on Rcpp for making analytical code go faster and further, along with 251 in BioConductor. On CRAN, 13.7% of all packages depend (directly) on Rcpp, and 59.6% of all compiled packages do. From the cloud mirror of CRAN (which is but a subset of all CRAN downloads), Rcpp has been downloaded 72.5 million times. The two published papers (also included in the package as preprint vignettes) have, respectively, 1678 (JSS, 2011) and 259 (TAS, 2018) citations, while the the book (Springer useR!, 2013) has another 588. This release is incremental as usual, generally preserving existing capabilities faithfully while smoothing our corners and / or extending slightly, sometimes in response to changing and tightened demands from CRAN or R standards. The full list below details all changes, their respective PRs and, if applicable, issue tickets. Big thanks from all of us to all contributors!

Changes in Rcpp version 1.0.11 (2023-07-03)
  • Changes in Rcpp API:
    • Rcpp:::CxxFlags() now quotes only non-standard include path on linux (Lukasz in #1243 closing #1242).
    • Two unit tests no longer accidentally bark on stdout (Dirk and I aki in #1245).
    • Compilation under C++20 using clang++ and its standard library is enabled (Dirk in #1248 closing #1244).
    • Use backticks in a generated .Call() statement in RcppExports.R (Dirk #1256 closing #1255).
    • Switch to system2() to capture standard error messages in error cases (I aki in #1259 and #1261 fixing #1257).
  • Changes in Rcpp Documentation:
    • The CITATION file format has been updated (Dirk in #1250 fixing #1249).
  • Changes in Rcpp Deployment:
    • A test for qnorm now uses the more accurate value from R 4.3.0 (Dirk in #1252 and #1260 fixing #1251).
    • Skip tests with path issues on Windows (I aki in #1258).
    • Container deployment in continuous integrations was improved. (I aki and Dirk in #1264, Dirk in #1269).
    • Several files receives minor edits to please R CMD check from r-devel (Dirk in #1267).

Thanks to my CRANberries, you can also look at a diff to the previous release. Questions, comments etc should go to the rcpp-devel mailing list off the R-Forge page. Bugs reports are welcome at the GitHub issue tracker as well (where one can also search among open or closed issues); questions are also welcome under rcpp tag at StackOverflow which also allows searching among the (currently) 2994 previous questions. If you like this or other open-source work I do, you can sponsor me at GitHub.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

1 July 2023

Dirk Eddelbuettel: New Achievement Unlocked: Bugfix Patch into Stable Release Update

Last weekend was the bi-annual time to roll the main machine and server to the current Ubuntu release, now at 23.04. It must now have been fifteen or so years that I have used Ubuntu for my desktop / server (for reasons I may write about another time). And of course it all passed swimmingly as usual. [ And a small aside, if I may. Among all these upgrades, one of my favourite piece of tech trivia that may well be too little known remains the dedication of the PostgreSQL maintainers installing the new version, now PostgreSQL 15, seamlessly in parallel with the existing one, in my case PostgreSQL 14, keeping both running (!!) on two neighbouring ports (!!) so that there is no service disruption. So at some point, maybe this weekend, I will run the provided script to dump-and-restore to trigger the database migration at my convenience. Happy PostgreSQL on Debian/Ubuntu user since the late 1990s. It. Just. Works. ] [ Similarly, it is plainly amazeballs how apt orders and runs package updates to service to keep running for a maximum amount of time. This machine acts as e.g. a web server and it was up and running (as were other services) while thousands of package got updated/replaced. It is pretty amazing. Whereas on other platforms people still maintain the do not ever update anything we demonstrably offer the opposite here. Really not too shabby. ] This time, I had one small hickup. Emacs, now at version 28 bringing loads of niceties along, would not load. And the error soon lead to a post on the magit list where its indefatigable author Jonas Bernoulli suggested a rebuild (and hence re-compilation of the elisp files). Which I did, and which allowed a start of VM inside Emacs. So I was happy. But it allowed it only once for each VM package reinstall. Not good, and I remained curious. Some more digging lead to a breakthrough. A post and commit at the Fedora Project indicated that for just VM within Emacs, byte-compilation throws a spanner. Which one can work around by telling Emacs not to compile the files in the VM folder. So I applied that patch to the VM package in a local build et voil we have working VM. The world is clearly better when your email client of 25+ years just works. And feels snappier because everything under Emacs28 feels snappier! So I set this up properly and filed Debian Bug Report #1039105. To which Ian Jackson, the maintainer, replied a few days later nodding that he could reproduce. And that he concurred with the bug report, and was planning to update throughout. And lo and behold this morning s update reveals that this made into an update for the just-released Debian Bookworm. So yay. In all these years of Debian maintainership (somewhere between twentyfive and thirty) this may be my first bug report with patch going straight into a stable release. But of course, true and full credit goes of course to G ran Uddeborg for putting it up first for Fedora. Lovely how Open Source can work together. We really should do more, not less, of that. But I digress Anyway, in sum: If you try to use VM under the lovely Emacs 28, there is a fix, and if you use it with Debian Bookworm the fix should hit your mirrors soons. Ditto, methinks, for the next Ubuntu release. If you use it under Ubuntu now, the package is (elisp) text-only and can be safely installed on a derivative (which we do not enjoy in general but which is fine here). So enjoy! If you like this or other open-source work I do, you can now sponsor me at GitHub.

This post by Dirk Eddelbuettel originated on his Thinking inside the box blog. Please report excessive re-aggregation in third-party for-profit settings.

Debian Brasil: MiniDebConf Bras lia 2023 - um breve relato

Minidebconf2033 palco No per odo de 25 a 27 de maio, Bras lia foi palco da MiniDebConf 2023. Esse encontro, composto por diversas atividades como palestras, oficinas, sprints, BSP (Bug Squashing Party), assinatura de chaves, eventos sociais e hacking, teve como principal objetivo reunir a comunidade e celebrar o maior projeto de Software Livre do mundo: o Debian. A MiniDebConf Bras lia 2023 foi um sucesso gra as participa o de todas e todos, independentemente do n vel de conhecimento sobre o Debian. Valorizamos a presen a tanto dos(as) usu rios(as) iniciantes que est o se familiarizando com o sistema quanto dos(as) desenvolvedores(as) oficiais do projeto. O esp rito de acolhimento e colabora o esteve presente em todos os momentos. As MiniDebConfs s o encontros locais organizados por membros do Projeto Debian, visando objetivos semelhantes aos da DebConf, por m em mbito regional. Ao longo do ano, eventos como esse ocorrem em diferentes partes do mundo, fortalecendo a comunidade Debian. Minidebconf2023 placa Atividades A programa o da MiniDebConf foi intensa e diversificada. Nos dias 25 e 26 (quinta e sexta-feira), tivemos palestras, debates, oficinas e muitas atividades pr ticas. J no dia 27 (s bado), ocorreu o Hacking Day, um momento especial em que os(as) colaboradores(as) do Debian se reuniram para trabalhar em conjunto em v rios aspectos do projeto. Essa foi a vers o brasileira da Debcamp, tradi o pr via DebConf. Nesse dia, priorizamos as atividades pr ticas de contribui o ao projeto, como empacotamento de softwares, tradu es, assinaturas de chaves, install fest e a Bug Squashing Party. Minidebconf2023 auditorio

Minidebconf2023 oficina N meros da edi o Os n meros do evento impressionam e demonstram o envolvimento da comunidade com o Debian. Tivemos 236 inscritos(as), 20 palestras submetidas, 14 volunt rios(as) e 125 check-ins realizados. Al m disso, nas atividades pr ticas, tivemos resultados significativos, como 7 novas instala es do Debian GNU/Linux, a atualiza o de 18 pacotes no reposit rio oficial do projeto Debian pelos participantes e a inclus o de 7 novos contribuidores na equipe de tradu o. Destacamos tamb m a participa o da comunidade de forma remota, por meio de transmiss es ao vivo. Os dados anal ticos revelam que nosso site obteve 7.058 visualiza es no total, com 2.079 visualiza es na p gina principal (que contava com o apoio de nossos patrocinadores), 3.042 visualiza es na p gina de programa o e 104 visualiza es na p gina de patrocinadores. Registramos 922 usu rios(as) nicos durante o evento. No YouTube, a transmiss o ao vivo alcan ou 311 visualiza es, com 56 curtidas e um pico de 20 visualiza es simult neas. Foram incr veis 85,1 horas de exibi o, e nosso canal conquistou 30 novos inscritos(as). Todo esse engajamento e interesse da comunidade fortalecem ainda mais a MiniDebConf. Minidebconf2023 palestrantes Fotos e v deos Para revivermos os melhores momentos do evento, temos dispon veis fotos e v deos. As fotos podem ser acessadas em: https://deb.li/pbsb2023. J os v deos com as grava es das palestras est o dispon veis no seguinte link: https://deb.li/vbsb2023. Para manter-se atualizado e conectar-se com a comunidade Debian Bras lia, siga-nos em nossas redes sociais: Agradecimentos Gostar amos de agradecer profundamente a todos(as) os(as) participantes, organizadores(as), patrocinadores e apoiadores(as) que contribu ram para o sucesso da MiniDebConf Bras lia 2023. Em especial, expressamos nossa gratid o aos patrocinadores Ouro: Pencillabs, Globo, Policorp e Toradex Brasil, e ao patrocinador Prata, 4-Linux. Tamb m agradecemos Finatec e ao Instituto para Conserva o de Tecnologias Livres (ICTL) pelo apoio. Minidebconf2023 coffee A MiniDebConf Bras lia 2023 foi um marco para a comunidade Debian, demonstrando o poder da colabora o e do Software Livre. Esperamos que todas e todos tenham desfrutado desse encontro enriquecedor e que continuem participando ativamente das pr ximas iniciativas do Projeto Debian. Juntos, podemos fazer a diferen a! Minidebconf2023 fotos oficial

Paul Wise: FLOSS Activities June 2023

Focus This month I didn't have any particular focus. I just worked on issues in my info bubble.

Changes

Issues

Review
  • Spam: reported 29 Debian mailing list posts
  • Debian wiki: RecentChanges for the month
  • Debian BTS usertags: changes for the month
  • Debian screenshots:
    • approved lsd stockfish x86dis
    • rejected libselinux1 (photo), stockfish (mobile app), php-bcmath (selfie), chromium-browser/binutils-alpha-linux-gnu (medical photo), weboob-qt (QR code)

Administration
  • Debian QA services: deploy changes
  • Debian IRC: updated #debian-live admin list
  • Debian mentors: investigate reason for missing package
  • Debian wiki: unblock IP addresses, approve accounts

Communication

Sponsors The sptag work was sponsored. All other work was done on a volunteer basis.

30 June 2023

Russell Coker: Links June 2023

Tablet Magazine has an interesting article about Jewish men who fought in the military for Nazi Germany [1]. I m surprised that they didn t frag their colleagues. Dropbox has an insightful interview with a lawyer about the future of machine learning in the legal profession [2]. This seems like it could give real benefits to society in giving legal assistance to more people and giving less uncertainty about the result of court cases. It could also find unclear laws for legislators who want to improve things. Some people have started a software to produce a free software version of Victoria 2 [3]. Hopefully OpenVic will become as successful as FreeCiv and FreeCraft! Hackster has an interesting article about work to create a machine that does a realistic impersonation of someone s handwriting [4]. The aim is to be good enough to fool people who want manually written assignments. Ars technica has an interesting article about a side channel attack using the power LEDs of smart-card readers to extract cryptographic secret key data [5]. As usual for articles about side channels it turns out to be really hard to do and their proof of concept involved recording a card being repeatedly scanned for an hour. This doesn t mean it s a non-issue, they should harden readers against this. Vice has an interesting article on the search for chemical remnants of ancient organisms in 1.6 billion year old fossils [6]. Bleeping Computer has an interesting article about pirate Windows 10 ISOs infecting systems with EFI malware [7]. That s a particularly nasty attack and shows yet another down-side to commercial software. For Linux the ISOs are always clean and the systems aren t contaminated. The Register has an interesting article about a robot being used for chilled RAM attacks to get access to boot time secrets [8]. They monitor EMF output to stop it at the same time in each boot which I consider the most noteworthy part of this attack. The BBC has an interesting article about personalised medicine [9]. There are 400 million people in the world with rare diseases and an estimated 60 million of them will die before the age of 5. Personalised medicine can save many lives. Let s hope it is used outside the first world. Knuth s thoughts about ChatGPT are interesting [10]. Interesting article about Brown M&Ms and assessing the likely quality of work from a devops team [11]. The ABC has an interesting article about the use of AI and robot traps to catch feral cats [12].

29 June 2023

Antoine Beaupr : Using signal-cli to cancel your Signal account

For obscure reasons, I have found myself with a phone number registered with Signal but without any device associated with it. This is the I lost my phone section in Signal support, which rather unhelpfully tell you that, literally:
Until you have access to your phone number, there is nothing that can be done with Signal.
To be fair, I guess that sort of makes sense: Signal relies heavily on phone numbers for identity. It's how you register to the service and how you recover after losing your phone number. If you have your PIN ready, you don't even change safety numbers! But my case is different: this phone number was a test number, associated with my tablet, because you can't link multiple Android device to the same phone number. And now that I brilliantly bricked that tablet, I just need to tell people to stop trying to contact me over that thing (which wasn't really working in the first place anyway because I wasn't using the tablet that much, but I digress). So. What do you do? You could follow the above "lost my phone" guide and get a new Android or iOS phone to register on Signal again, but that's pretty dumb: I don't want another phone, I already have one. Lo and behold, signal-cli to the rescue!

Disclaimer: no warranty or liability Before following this guide, make sure you remember the license of this website, which specifically has a Section 5 Disclaimer of Warranties and Limitation of Liability. If you follow this guide literally, you might actually get into trouble. You have been warned. All Cats Are Beautiful.

Installing in Docker Because signal-cli is not packaged in Debian (but really should be), I need to bend over backwards to install it. The installation instructions suggest building from source (what is this, GentooBSD?) or installing binary files (what is this, Debiandows?), that's all so last millennium. I want something fresh and fancy, so I went with the extremely legit Docker registry ran by the not-shady-at-all gitlab.com/packaging group which is suspiciously not owned by any GitLab.com person I know of. This is surely perfectly safe.
(Insert long digression on supply chain security here and how Podman is so much superior to Docker. Feel free to dive deep into how RedHat sold out to the nazis or how this is just me ranting about something I don't understand, again. I'm not going to do all the work for you.)
Anyway. The magic command is:
mkdir .config/signal-cli
podman pull registry.gitlab.com/packaging/signal-cli/signal-cli-jre:latest
# lightly hit computer with magic supply chain verification wand
alias signal-cli="podman run --rm --publish 7583:7583 --volume .config/signal-cli:/var/lib/signal-cli --tmpfs /tmp:exec   registry.gitlab.com/packaging/signal-cli/signal-cli-jre:latest --config /var/lib/signal-cli"
At this point, you have a signal-cli alias that should more or less behave as per upstream documentation. Note that it sets up a network service on port 7583 which is unnecessary because you likely won't be using signal-cli's "daemon mode" here, this is a one-shot thing. But I'll probably be reusing those instructions later on, so I figured it might be a safe addition. Besides, it's what the instructions told me to do so I'm blindly slamming my head in the bash pipe, as trained. Also, you're going to have the signal-cli configuration persist in ~/.config/signal-cli there. Again, totally unnecessary.

Re-registering the number Back to our original plan of canceling our Signal account. The next step is, of course, to register with Signal.
Yes, this is a little counter-intuitive and you'd think there would be a "I want off this boat" button on https://signal.org that would do this for you, but hey, I guess that's only reserved for elite hackers who want to screw people over, I mean close their accounts. Mere mortals don't get access to such beauties. Update: a friend reminded me there used to be such a page at https://signal.org/signal/unregister/ but it's mysteriously gone from the web, but still available on the wayback machine although surely that doesn't work anymore. Untested.
To register an account with signal-cli, you first need to pass a CAPTCHA. Those are the funky images generated by deep neural networks that try to fool humans into thinking other neural networks can't break them, and generally annoy the hell out of people. This will generate a URL that looks like:
signalcaptcha://signal-hcaptcha.$UUID.registration.$THIRTYTWOKILOBYTESOFGARBAGE
Yes, it's a very long URL. Yes, you need the entire thing. The URL is hidden behind the Open Signal link, you can right-click on the link to copy it or, if you want to feel like it's 1988 again, use view-source: or butterflies or something. You will also need the phone number you want to unregister here, obviously. We're going to take a not quite random phone number as an example, +18002677468.
Don't do this at home kids! Use the actual number and don't copy-paste examples from random websites!
So the actual command you need to run now is:
signal-cli -a +18002677468 register --captcha signalcaptcha://signal-hcaptcha.$UUID.registration.$THIRTYTWOKILOBYTESOFGARBAGE
To confirm the registration, Signal will send a text message (SMS) to that phone number with a verification code. (Fun fact: it's actually Twilio relaying that message for Signal and that is... not great.) If you don't have access to SMS on that number, you can try again with the --voice option, which will do the same thing with a actual phone call. I wish it would say "Ok boomer" when it calls, but it doesn't. If you don't have access to either, you're screwed. You may be able to port your phone number to another provider to gain control of the phone number again that said, but at that point it's a whole different ball game. With any luck now you've received the verification code. You use it with:
signal-cli -a +18002677468 verify 131213
If you want to make sure this worked, you can try writing to another not random number at all, it should Just Work:
signal-cli -a +18002677468 send -mtest +18005778477
This is almost without any warning on the other end too, which says something amazing about Signal's usability and something horrible about its security.

Unregistering the number Now we get to the final conclusion, the climax. Can you feel it? I'll try to refrain from further rants, I promise. It's pretty simple and fast, just call:
signal-cli -a +18002677468 unregister
That's it! Your peers will now see an "Invite to Signal" button instead of a text field to send a text message.

Cleanup Optionally, cleanup the mess you left on this computer:
rm -r ~/.config/signal-cli
podman image rm registry.gitlab.com/packaging/signal-cli/signal-cli-jre

Russ Allbery: Review: Semiosis

Review: Semiosis, by Sue Burke
Series: Semiosis #1
Publisher: Tor
Copyright: February 2018
ISBN: 0-7653-9137-6
Format: Kindle
Pages: 333
Semiosis is a first-contact science fiction novel and the first half of a duology. It was Sue Burke's first novel. In the 2060s, with the Earth plagued by environmental issues, a group of utopians decided to found a colony on another planet. Their goal is to live in harmony with an unspoiled nature. They wrote a suitably high-minded founding document, the Constitution of the Commonwealth of Pax, and set out in cold sleep on an interstellar voyage. 158 years later, they awoke in orbit around a planet with a highly-developed ecology, which they named Pax. Two pods and several colonists were lost on landing, but the rest remained determined to follow through with their plan. Not that they had many alternatives. Pax does not have cities or technological mammalian life, just as they hoped. It does, however, have intelligent life. This novel struggled to win me over for reasons that aren't the fault of Burke's writing. The first is that it is divided into seven parts, each telling the story of a different generation. Intellectually, I like this technique for telling an anthropological story that follows a human society over time. But emotionally, I am a character reader first and foremost, and I struggle with books where I can't follow the same character throughout. It makes the novel feel more like a fix-up of short stories, and I'm not much of a short story reader. Second, this is one of those stories where a human colony loses access to its technology and falls back to a primitive lifestyle. This is a concept I find viscerally unpleasant and very difficult to read about. I don't mind reading stories that start at the lower technological level and rediscover lost technology, but the process of going backwards, losing knowledge, surrounded by breaking technology that can never be repaired, is disturbing at a level that throws me out of the story. It doesn't help that the original colonists chose to embrace that reversion. Some of this wasn't intentional some vital equipment was destroyed when they landed but a lot of it was the plan from the start. They are the type of fanatics who embrace a one-way trip and cannibalizing the equipment used to make it in order to show their devotion to the cause. I spent the first part of the book thinking the founding colonists were unbelievably foolish, but then they started enforcing an even more restrictive way of life on their children and that tipped me over into considering them immoral. This was the sort of political movement that purged all religion and political philosophy other than their one true way so that they could raise "uncorrupted" children. Burke does recognize how deeply abusive this is. The second part of the book, which focuses on the children of the initial colonists, was both my favorite section and had my favorite protagonist, precisely because someone put words to the criticisms that I'd been thinking since the start of the book. The book started off on a bad foot with me, but if it had kept up the momentum of political revolution and rethinking provided by the second part, it might have won me over. That leads to the third problem, though, which is the first contact part of the story. (If you've heard anything about this series, you probably know what the alien intelligence is, and even if not you can probably guess, but I'll avoid spoilers anyway.) This is another case where the idea is great, but I often don't get along with it as a reader. I'm a starships and AIs and space habitats sort of SF reader by preference and tend to struggle with biological SF, even though I think it's great more of it is being written. In this case, mind-altering chemicals enter the picture early in the story, and while this makes perfect sense given the world-building, this is another one of my visceral dislikes. A closely related problem is that the primary alien character is, by human standards, a narcissistic asshole. This is for very good story and world-building reasons. I bought the explanation that Burke offers, I like the way this shows how there's no reason to believe humans have a superior form of intelligence, and I think Burke's speculations on the nature of that alien intelligence are fascinating. There are a lot of good reasons to think that alien morality would be wildly different from human morality. But, well, I'm still a human reading this book and I detested the alien, which is kind of a problem given how significant of a character it is. That's a lot baggage for a story to overcome. It says something about how well-thought-out the world-building is that it kept my attention anyway. Burke uses the generational structure very effectively. Events, preferences, or even whims early in the novel turn into rituals or traditions. Early characters take on outsized roles in history. The humans stick with the rather absurd constitution of Pax, but do so in a way that feels true to how humans reinterpret and stretch and layer meaning on top of wholly inadequate documents written in complete ignorance of the challenges that later generations will encounter. I would have been happier without the misery and sickness and messy physicality of this abusive colonization project, but watching generations of humans patch together a mostly functioning society was intellectually satisfying. The alien interactions were also solid, with the caveat that it's probably impossible to avoid a lot of anthropomorphizing. If I were going to sum up the theme of the novel in a sentence, it's that even humans who think they want to live in harmony with nature are carrying more arrogance about what that harmony would look like than they realize. In most respects the human colonists stumbled across the best-case scenario for them on this world, and it was still harder than anything they had imagined. Unfortunately, I thought the tail end of the book had the weakest plot. It fell back on a story that could have happened in a lot of first-contact novels, rather than the highly original negotiation over ecological niches that happened in the first half of the book. Out of eight viewpoint characters in this book, I only liked one of them (Sylvia). Tatiana and Lucille were okay, and I might have warmed to them if they'd had more time in the spotlight, but I felt like they kept making bad decisions. That's the main reason why I can't really recommend it; I read for characters, I didn't really like the characters, and it's hard for a book to recover from that. It made the story feel chilly and distant, more of an intellectual exercise than the sort of engrossing emotional experience I prefer. But, that said, this is solid SF speculation. If your preferred balance of ideas and characters is tilted more towards ideas than mine, and particularly if you like interesting aliens and don't mind the loss of technology setting, this may well be to your liking. Even with all of my complaints, I'm curious enough about the world that I am tempted to read the sequel, since its plot appears to involve more of the kind of SF elements I like. Followed by Interference. Content warning: Rape, and a whole lot of illness and death. Rating: 6 out of 10

27 June 2023

Daniel Lange: Xfce4 opening links in Chromium despite Firefox having been set as the default browser

Installing a laptop with the shiny new Debian Bookworm release finds a few interesting things broken that I probably had fixed in the past already on the old laptop. One, that was increadibly unintuitive to fix, was lots of applications (like xfce4-terminal or Telegram) opening links in Chromium despite Firefox being set as the preferred webbrowser everywhere. update-alternatives --config x-www-browser was pointing at Firefox already, of course.
The Xfce4 preferred application from settings was Firefox, of course.
xdg-mime query default text/html delivered firefox-esr.desktop, of course. Still nearly every link opens in Chromium... As usually the answer is out there. In this case in a xfce4-terminal bug report from 2015. The friendly "runkharr" has debugged the issue and provides the fix as well. As usually, all very easy once you know where to look. And why to hate GTK again a bit more: The GTK function gtk_show_uri() uses glib's g_app_info_launch_default_for_uri() and that - of course - cannot respect the usual mimetype setting. So quoting "runkharr" verbatim:
1. Create a file  exo-launch.desktop  in your  ~/.local/share/applications  directory with something like the following content:
    [Desktop Entry]
    Name=Exo Launcher
    Type=Application
    Icon=gtk-open
    Categories=Desktop;
    Comment=A try to force 'xfce4-terminal' to use the preferred application(s)
    GenericName=Exo Launcher
    Exec=exo-open %u
    MimeType=text/html;application/xhtml+xml;x-scheme-handler/http;x-scheme-handler/https;x-scheme-handler/ftp;application/x-mimearchive;
    Terminal=false
    OnlyShowIn=XFCE;
2. Create (if not already existing) a local  defaults.list  file, again in your  ~/.local/share/applications  directory. This file must start with a "group header" of
    [Default Applications]
3. Insert the following three lines somewhere below this  [Default Applications]  group header [..]:
    x-scheme-handler/http=exo-launch.desktop;
    x-scheme-handler/https=exo-launch.desktop;
    x-scheme-handler/ftp=exo-launch.desktop;
And ... links open in Firefox again. Thank you "runkharr"!

Russell Coker: Running a ChatGPT Type System

Alpaca I ve just done some experiments running ChatGPT type programs. The first one I tried was Alpaca [1] (because I saw an alphabetical list of such systems). Here s the 4GB data file [2]. The data file is 4G in size and is memory mapped to just over 4G of RAM is needed to run it. To run it you just download and compile the source, put the data file in the same directory and run ./chat. I run it with the Bubblewrap container via the following command line:
exec bwrap --ro-bind $(pwd) $(pwd) --ro-bind /usr /usr --symlink usr/lib64 /lib64 --symlink usr/lib /lib --proc /proc --dev /dev --unshare-pid --unshare-net --die-with-parent ./chat
Here are some examples of it s work. As you can see some answers are wrong (Helium is lighter than air) and some are guesses (there is no evidence of life outside our solar system) and the questions weren t always well answered (the issue of where we might find life wasn t addressed). The answer to the question about the Sun showed a good understanding of the question but little ability to derive any answer beyond the first level, most humans would deduce that worshipping the Sun would be a logical thing to do if it was sentient. Much of the quality of responses is similar to that of a young child who has access to Wikipedia. > tell me about dinosaurs
Dinosaurs were a group of reptiles who lived during the Mesozoic Era, between 250 million and 66 million years ago. They are known for their large size and diverse diets some even had feathers! Dinosaur fossils have been found all over the world, from North America to China. Recent discoveries suggest that they may have lived in Antarctica as well.
> are hydrogen or helium balloons better?
Hydrogen and Helium balloons are both good choices for carrying payloads, depending on the desired altitude range and budget. Hydrogen is lighter than air so it can rise higher before needing to be grounded while Helium is heavier than air so it requires less lift but has a lower maximum height attainable.
> is a 486 a good cpu?
Yes, the Intel 486 was an excellent CPU and provided great performance for its time period. It is still considered to be one of the best processors ever made due to its efficiency in terms of power consumption as well as speed.
> where will we find life outside the Earth?
Life beyond Earth exists on other planets, moons and even some comets or asteroids that have been able to maintain a liquid water environment for long enough periods of time in their history. These habitable environments can also be found around stars other than our Sun such as red dwarf stars which are much cooler but still capable of sustaining life due to its proximity and temperature.
> how do I write a good blog post?
Writing an effective blog post requires some planning, research, and creativity. Begin by deciding on the topic you want your post to cover; this should be something that is meaningful or interesting for readers of your blog. Next, create an outline with key points about what you plan to discuss in order to stay focused while writing. Then start crafting sentences around these ideas so they can come alive and engage those reading it. Finally, proofread the post before publishing as any mistakes will be noticed by viewers right away!
> if the sun was a sentient being how would that change life on earth?
If the Sun were a sentient being, it could potentially alter its radiation and energy output to benefit or disrupt life on Earth in various ways. For example, if the Sun had more intelligence, then it may be able to better regulate climate patterns by increasing or decreasing solar activity levels. Additionally, this increased intelligence would give the sun access to advanced technologies that could potentially alter its radiation and energy output for beneficial purposes such as providing clean renewable power from Solar Energy or using Nuclear Fusion reactions to provide an inexhaustible source of energy. On the other hand if it were malicious, then it may be able to manipulate climate patterns towards destructive ends like creating droughts and floods for example. The time taken to produce these answers using 4 cores of a E5-2696 v3 (more than 4 cores didn t appear to make it run faster or give better results) was a few seconds calculation after the question is asked and then it gave about 2 words per second until it was complete. Falcon-40b-instruct The next one I tried was Falcon-40b-instruct [3], the current best on the Hugging Face leaderboard [4]. It has a 90G set of data files. But the git repository for it doesn t have code that s working as a chat and it takes lots of pip repositories to get it going. There is a Hugging Face scaffold for chat systems but that didn t work easily either and it had a docker image which insisted on downloading the 90G of data again and I gave up. I guess Falcon is not for people who have little Python experience. Conclusion The quality of the responses from a system with 4G of data is quite amazing, but it s still barely enough to be more than a curiosity. It s a long way from the quality of ChatGPT [5] or the phind.com service described as The AI search engine for developers [6]. I have found phind.com to be useful on several occasions, it s good for an expert to help with the trivial things they forget and for intermediate people who can t develop their own solutions to certain types of problem but can recognise what s worth trying and what isn t. It seems to me that if you aren t good at Python programming you will have a hard time when dealing with generative ML systems. Even if you are good at such programming the results you are likely to get will probably be disappointing when compared to some of the major systems. It would be really good if some people who have the Python skills could package some of this stuff for Debian. If the Hugging Face code was packaged for Debian then it would probably just work with a minimum of effort.

Matt Brown: Designing a PCBA friendly CO2 monitor

co2mon.nz currently uses monitors based on Oliver Seiler s open source design which I am personally building. This post describes my exploration of how to achieve production of a CO2 monitor that could enable the growth of co2mon.nz.

Goals Primarily I want to design a CO2 monitor which allows the majority of the production process to be outsourced. In particular, the PCB should be able to be assembled in an automated fashion (PCBA). As a secondary goal, I d like to improve the aesthetics of the monitor while retaining the unique feature of displaying clear visual indication of the current ventilation level through coloured lights. Overall, I ll consider the project successfull if I can achieve a visually attractive CO2 monitor which takes me less than 10 minutes per monitor to assemble/box/ship and whose production cost has the potential to be lower than the current model.

PCB

Schematic The existing CO2 monitor design provides a solid foundation but relies upon the ESP32 Devkit board, which is intended for evaluation purposes and is not well suited to automated assembly. Replacing this devkit board with the underlying ESP32 module is the major change needed to enable PCBA production, which then also requires moving the supporting electronics from the devkit board directly onto the primary PCB. The basic ESP32 chipset used in the devkit boards is no longer available as a discrete module suitable for placement directly onto a PCB which means the board will also have to be updated to use a more modern variant of the ESP32 chipset which is in active production such as the ESP32-S3. The ESP32-S3-WROOM1-N4 module is a very close match to the original devkit and will be suitable for this project. In addition to the change of ESP module, I made the following other changes to the components in use:
  • Added an additional temperature/humidity sensor (SHT30). The current monitors take temperature/humidity measurements from the SCD40 chipset. These are primarily intended to help in the calculation of CO2 levels and rely on an offset being subtracted to account for the heat generated by the electronic components themselves. I ve found their accuracy to OK, but not perfect. SHT30 is a cheap part, so its addition to hopefully provide improved temperature/humidity measurement is an easy choice.
  • Swapped to USB-C instead of USB-B for the power connector. USB-C is much more common than USB-B and is also smaller and not as tall off the board which provides more flexibility in the case design.
With major components selected the key task is to draw the schematic diagram describing how they electrically connect to each other, which includes all the supporting electronics (e.g. resistors, capacitors, etc) needed. Schematic I started out trying to use the EasyEDA/OSHWLab ecosystem thinking the tight integration with JLCPCB s assembly services would be a benefit, but the web interface was too clunky and limiting and I quickly got frustrated. KiCad proved to be a much more pleasant and capable tool for the job. The reference design in the ESP32 datasheet (p28) and USB-C power supply examples from blnlabs were particularly helpful alongside the KiCad documentation and the example of the existing monitor in completing this step (click the image to enlarge).

Layout The next step is to physically lay out where each component from the schematic will sit on the PCB itself. Obviously this requires first determining the overall size, shape and outline of the board and needs to occur in iteration with the intended design of the overall monitor, including the case, to ensure components like switches and USB sockets line up correctly. In addition to the requirements around the look and function of the case, the components themselves also have considerations that must be taken into account, including:
  • For best WiFi reception, the ESP32 antenna should be at the top of the monitor and should not have PCB underneath it, or for a specified distance either side of it.
  • The SHT30 temperature sensor should be as far from any heat generating components (e.g. the ESP32, BME680 and SCD40 modules) as possible and also considering that any generated heat will rise, as low on the monitor as possible.
  • The sensors measuring the air (SCD40, BME680 and SHT30) must have good exposure to the air outside the case.
PCB Taking all of these factors into account I ended up with a square PCB containing a cutout in the top right so that the ESP32 antenna can sit within the overall square outline while still meeting its design requirements. The SCD40 and BME680 sit in the top left corner, near the edges for good airflow and far away from the SHT30 temperature sensor in the bottom left corner. The LEDs I placed in a horizontal row across the center of the board, the LCD in the bottom right, a push button on the right-hand side and the USB-C socket in the center at the bottom. Once the components are placed, the next big task is to route the traces (aka wires) between the components on the board such that all the required electrical connections are made without any unintended connections (aka shorts) being created. This is a fun constraint solving/optimisation challenge and takes on an almost artistic aspect with other PCB designers often having strong opinions on which layout is best. The majority of the traces and routing for this board were able to be placed on the top layer of the PCB, but I also made use of the back layer for a few traces to help avoid conflicts and deal with places where different traces needed to cross each other. It s easy to see how this step would be much more challenging and time consuming on a larger and more complex PCB design. The final touches were to add some debugging breakouts for the serial and JTAG ports on the ESP32-S3 and a logo and various other helpful text on the silkscreen layer that will be printed on the PCB so it looks nice.

Production For assembly of the PCB, I went with JLCPCB based out of China. The trickiest part of the process was component selection and ensuring that the parts I had planned in the schematic were available. JLCPCB in conjunction with lcsc.com provides a basic and extended part library. If you use only basic parts you get quicker and cheaper assembly, while using extended parts bumps your order into a longer process with a small fee charged for each component on the board. Initially I spent a lot of time selecting components (particularly LEDs and switches) that were in the basic library before realising that the ESP32 modules are only available in the extended library! I think the lesson is that unless you re building the most trivial PCB with only passive components you will almost certainly end up in the advanced assembly process anyway, so trying to stay within the basic parts library is not worth the time. Unfortunately the SCD40 sensor, the most crucial part of the monitor, is not stocked at all by JLCPCB/LCSC! To work around this JLCPCB will maintain a personal component library for you when you ship components to them to for use in future orders. Given the extra logistical time and hassle of having to do this, combined with having a number of SCD40 components already on hand I decided to have the boards assembled without this component populated for the initial prototype run. This also had the benefit of lowering the risk if something went wrong as the cost of the SCD40 is greater than the cost of the PCB and all the other components combined! I found the kicad-jlcpcb-tools plugin for KiCad invaluable for keeping track of what part from lcsc.com I was planning to use for each component and generating the necessary output files for JLCPCB. The plugin allows you to store these mappings in your actual schematic which is very handy. The search interface it provides is fairly clunky and I found it was often easier to search for the part I needed on lcsc.com and then just copy the part number across into the plugin s search box rather than trying to search by name or component type. The LCD screen is the remaining component which is not easily assembled onto the PCB directly, but as you ll see next, this actually turned out to be OK as integrating the screen directly into the case makes the final assembly process smoother. fabricated PCBs The final surprise in the assembly process was the concept of edge rails, additional PCB material that is needed on either side of the board to help with feeding it through the assembly machine in the correct position. These can be added automatically by JLCPCB and have to be snapped off after the completed boards are received. I hadn t heard about these before and I was a little worried that they d interfere or get in the way of either the antenna cut-out at the top of the board, or the switch on the right hand side as it overhangs the edge so it can sit flush with the case. In the end there was no issue with the edge rails. The switch was placed hanging over them without issue and snapping them off once the boards arrived was a trivial 30s job using a vice to hold the edge rail and then gently tipping the board over until it snapped off - the interface between the board and the rails while solid looking has obviously been scored or perforated in some way during the production process so the edge breaks cleanly and smoothly. Magic! The process was amazingly quick with the completed PCBs (picture above) arriving within 7 days of the order being placed and looking amazing.

Case

Design I mocked up a very simple prototype of the case in FreeCAD during the PCB design process to help position and align the placement of the screen, switch and USB socket on the PCB as all three of these components interface directly with the edges of the case. Initially this design was similar to the current monitor design where the PCB (with lights and screen attached) sits in the bottom of the case, which has walls containing grilles for airflow and then a separate transparent perspex is screwed onto the top to complete the enclosure. As part of the aesthetic improvements for the new monitor I wanted to move away from a transparent front panel to something opaque but still translucent enough to allow the colour of the lights to show through. Without a transparent front panel the LCD also needs to be mounted directly into the case itself. The first few prototype iterations followed the design of the original CO2 monitor with a flat front panel that attaches to the rest of the case containing the PCB, but the new requirement to also attach the LCD to the front panel proved to make this unworkable. To stay in place the LCD has to be pushed onto mounting poles containing a catch mechanism which requires a moderate amount of force and applying that force to the LCD board when it is already connected to the PCB is essentially impossible. case with lcd attached As a result I ended up completely flipping the design such that the front panel is a single piece of plastic that also encompasses the walls of the case and contains appropriate mounting stakes for both the screen and the main PCB. Getting to this design hugely simplified the assembly process. Starting with an empty case lying face down on a bench, the LCD screen is pushed onto the mounting poles and sits flush with the cover of the case - easily achieved without the main PCB yet in place. case with pcb in place Next, the main PCB is gently lowered into the case facing downwards and sits on the mounting pole in each corner with the pins for the LCD just protruding through the appropriate holes in the PCB ready to be quickly soldered into place (this took significant iteration and tuning of dimensions/positioning to achieve!). Finally, a back panel can be attached which holds the PCB in place and uses cantilever snap joints to click on to the rest of the case. Overall the design is a huge improvement over the previous case which required screws and spacers to position the PCB and cover relative to the rest of the case, with the spacers and screws being particularly fiddly to work with. The major concern I had with the new design was that the mount to attach the monitor to the wall has moved from being attached to the main case and components directly to needing to be on the removable back panel - if the clips holding this panel to the case fail the core part of the monitor will fall off the wall which would not be good. To guard against this I ve doubled the size and number of clips at the top of the case (which bears the weight) and the result seems very robust in my testing. To completely assemble a monitor, including the soldering step takes me about 2-3 minutes individually, and would be even quicker if working in batches.

Production Given the number of design/testing iterations required to fine tune the case I chose not to outsource case production for now and used my 3D printer to produce them. I ve successfully used JLCPCB s 3D printing service for the previous case design, so I m confident that getting sufficient cases printed from JLCPCB or another supplier will not be an issue now that the design is finalised. completed monitor I tried a variety of filament colours, but settled on a transparent filament which once combined in the necessary layers to form the case is not actually transparent like perspex is, but provides a nice translucent medium which achieves the goal of having the light colour visible without exposing all of the circuit board detail. There s room for future improvement in the positioning of the LEDs on the circuit board to provide a more even distribution of light across the case but overall I really like the way the completed monitor ends up looking.

Evaluation Building this monitor has been a really fun project, both in seeing something progress from an idea, to plans on a screen to a nice physical thing on my wall, but also in learning and developing a bunch of new skills in PCB design, assembly and 3D design. completed monitor The goal of having a CO2 monitor which I can outsource the vast majority of production of is as close to being met as I think is possible without undertaking the final proof of placing a large order. I ve satisfied myself that each step is feasible and that the final assembly process is quick, easy and well below the level of effort and time it was taking me to produce the original monitors. Cost wise it s also a huge win, primarily in terms of the time taken, but also in the raw components - currently the five prototypes I ordered and built are on par with the component cost of the original CO2 monitor, but this will drop further with larger orders due to price breaks and amortisation of the setup and shipping expenses across more monitors. This project has also given me a much better appreciation for how much I m only just scratching the surface of the potential complexities and challenges in producing a hardware product of this type. I m reasonably confident I could successfully produce a few hundred and maybe even a few thousand monitors using this approach, but it s also clear that getting beyond that point is and would be a whole further level of effort and learning. Hardware is hard work. That s not news to anyone, including me, but there is something to be said for experiencing the process first hand to make the reality of what s required real. The PCB and case designs are both shared and can be found at https://github.com/co2monnz/co2monitor-pcb and https://github.com/co2monnz/cad, feedback and suggestions welcome!

26 June 2023

Lukas M rdian: Netplan 0.106.1 stable release

We are happy to announce that Netplan 0.106.1 is available for download on Ubuntu Mantic Minotaur and Debian testing. This release includes some improvements in our documentation and CI infrastructure and a number of bug fixes.

What s new in Netplan 0.106.1?

Documentation

Infrastructure
  • canonical/setup-lxd GitHub action. The autopkgtest environment creation was standardized to use Canonical s setup-lxd action.
  • Snapd integrations tests with spread. A new test set for the Snapd integration with Netplan was introduced using the spread tool.
  • DBus. A number of DBus integration tests were added to the Debian package.

New features
  • Keyfile parser improvements. Our Network Manager keyfile parser (the capability of loading Network Manager configuration to Netplan YAML) was expanded to support all the types of tunnels supported by Netplan.

Misc
  • Ubuntu s Code of Conduct 2.0 was added to the code repository.
  • We added a new bash autocompletion script with all the Netplan s subcommands.
  • The new release package was synchronized with Debian.

Bug fixes
  • Keyfile parser. This release contains a couple of important fixes for the NetworkManager integration stability: 1) adding WPA enterprise connections is now working fine and new test cases were added to the package; 2) a WireGuard peer with allowed IPs that don t include the network prefix are now accepted.
  • Netplan parser. A number of memory leaks and stability issues were fixed.
  • DBus. An issue related to how directory paths are built in the Netplan DBus service was causing issues in the Snapd integration and was fixed.
For the complete list of changes please consult the debian/changelog file in https://launchpad.net/ubuntu/+source/netplan.io/+changelog

25 June 2023

Jonathan McDowell: Figuring out the right card for foreign currency transactions

While travel these days is much reduced I still end up in Dublin regularly enough (though less so now I m not working directly with folk there), and have the occasional US trip. Given that I live and work in the UK, and thus get paid in GBP ( ), this leads to the question of what to do about USD ($) and EUR ( ) transaction. USD turns out to be easy; I still have a US account from when I lived there and keeping it active has, so far, not proved to be a problem. EUR is tricker. In an ideal world I d find a fee-free account that would allow normal Eurozone transfers and provide me with a suitable debit + credit card for use while travelling. I ve found options with a fee, but I don t have enough Euro transactions to make it worthwhile. A friend pointed me at the HSBC Global Money debit card, which claims no fees for currency conversions from and competitive rates. As I already have an account with HSBC it was easy to sign up to try it out. And, having recently been on trip to CenterParcs, I had the perfect opportunity to compare it to my (and my wife s) existing cards to see how the rates played out. In particular I ve always meant to figure out if the cards that don t charge a loading rate end up with the same exchange rate as the cards that do have a separate per transaction charge. So, armed with the HSBC Global Money card, a Monzo debit card, a Nationwide debit card, and a co-operative debit card, we engage on a week of eating out in the interests of data! The results will probably shock no one who s properly looked into this themselves. All the cards were on the VISA network, they all ended up at around 1 1.15. According to Xe that was roughly the mid-market rate for the week I was away, so it seems like trusting VISA to do the currency conversion is a reasonable thing to do. The problem comes with the range of charges:
Card Exchange rate Charge %
Co-Op 1.15 2.65%
HSBC 1.15 0.00%
Monzo 1.15 0.00%
Nationwide 1.15 2.99%
This matches what Nationwide claims for its foreign transaction fees, though Co-Op claims 2.75% and the numbers looked more like 2.65% on the small transactions we incurred. So, the HSBC Global Money card is definitely a decent option. However Monzo is just a good, and has the advantage that it s a normal current account rather than something slightly different you have to funnel money into. Both are let down by the fact you need to use an app to check your balance etc - Monzo seems to only have extremely basic web access to any of their accounts and HSBC don t expose the Global Money account at all via web banking, only the phone app. Finally, what I really want is to be able to do this with a credit card, especially for things like online purchases or staying at hotels. My current credit card suffers from a per-transaction charge, but while looking up the Nationwide debit charge %age to confirm it matched what I saw I discovered that Nationwide credit cards do not charge a fee. So I think I ll be investigating that for my next trip.

Russ Allbery: Review: The Wee Free Men

Review: The Wee Free Men, by Terry Pratchett
Series: Discworld #30
Publisher: HarperTempest
Copyright: 2003
Printing: 2006
ISBN: 0-06-001238-2
Format: Mass market
Pages: 375
The Wee Free Men is the 30th Discworld novel but the first Tiffany Aching book and doesn't rely on prior knowledge of Discworld, although the witches from previous books do appear. You could start here, although I think the tail end of the book has more impact if you already know who Granny Weatherwax and Nanny Ogg are. The Amazing Maurice and His Educated Rodents was the first Discworld novel written to be young adult, and although I could see that if I squinted, it didn't feel that obviously YA to me. The Wee Free Men is clearly young adult (or perhaps middle grade), right down to the quintessential protagonist: a nine-year-old girl who is practical and determined and a bit of a misfit and does a lot of growing up over the course of the story. Tiffany Aching is the youngest daughter in a large Aching family that comes from a long history of Aching families living in the Chalk. She has a pile of older relatives and one younger brother named Wentworth who is an annoying toddler obsessed with sweets. Her family work a farm that is theoretically the property of the local baron but has been in their family for years. There is always lots to do and Tiffany is an excellent dairymaid, so people mostly leave her alone with her thoughts and her tiny collection of books from her grandmother. Her now-deceased Grandma Aching was a witch. Tiffany, as it turns out, is also a witch, not that she knows that. As the book opens, certain... things are trying to get into her world from elsewhere. The first is a green monster that pops up out of the river and attempts to snatch Wentworth, much to Tiffany's annoyance. She identifies it as Jenny Green-Teeth via a book of fairy tales and dispatches it with a frying pan, somewhat to her surprise, but worse are coming. Even more surprised by her frying pan offensive are the Nac Mac Feegle, last seen in Carpe Jugulum, who know something about where this intrusion is coming from. In short order, the Aching farm has a Nac Mac Feegle infestation. This is, unfortunately, another book about Discworld's version of fairy (or elves, as they were called in Lords and Ladies). I find stories about the fae somewhat hit and miss, and Pratchett's version is one of my least favorites. The Discworld Queen of Fairy is mostly a one-dimensional evil monster and not a very interesting one. A big chunk of the plot is an extended sequence of dreams that annoyed me and went on for about twice as long as it needed to. That's the downside of this book. The upside is that Tiffany Aching is exactly the type of protagonist I loved reading about as a kid, and still love reading about as an adult. She's thoughtful, curious, observant, determined, and uninterested in taking any nonsense from anyone. She has a lot to learn, both about the world and about herself, but she doesn't have to be taught lessons twice and she has a powerful innate sense of justice. She also has a delightfully sarcastic sense of humor.
"Zoology, eh? That's a big word, isn't it." "No, actually it isn't," said Tiffany. "Patronizing is a big word. Zoology is really quite short."
One of the best things that Pratchett does with this book is let Tiffany dislike her little brother. Wentworth eventually ends up in trouble and Tiffany has to go rescue him, which of course she does because he's her baby brother. But she doesn't like him; he's annoying and sticky and constantly going on about sweets and never says anything interesting. Tiffany is aware that she's supposed to love him because he's her little brother, but of course this is not how love actually works, and she doesn't. But she goes and rescues him anyway, because that's the right thing to do, and because he's hers. There are a lot of adult novels that show the nuanced and sometimes uncomfortable emotions we have about family members, but this sort of thing is a bit rarer in novels pitched at pre-teens, and I loved it. One valid way to read it is that Tiffany is neurodivergent, but I think she simply has a reasonable reaction to a brother who is endlessly annoying and too young to have many redeeming qualities in her eyes, and no one forces her to have a more socially expected one. It doesn't matter what you feel about things; it matters what you do, and as long as you do the right thing, you can have whatever feelings about it you want. This is a great lesson for this type of book. The other part of this book that I adored was the stories of Grandma Aching. Tiffany is fairly matter-of-fact about her dead grandmother at the start of the book, but it becomes clear over the course of the story that she's grieving in her own way. Grandma Aching was a taciturn shepherd who rarely put more than two words together and was much better with sheep than people, but she was the local witch in the way that Granny Weatherwax was a witch, and Tiffany was paying close attention. They never managed to communicate as much as either of them wanted, but the love shines through Tiffany's memories. Grandma Aching was teaching her how to be a witch: not the magical parts, but the far more important parts about justice and fairness and respect for other people. This was a great introduction of a new character and a solid middle-grade or young YA novel. I was not a fan of the villain and I can take or leave the Nac Mac Feegle (who are basically Scottish Smurfs crossed with ants and are a little too obviously the comic relief, for all that they're also effective warriors). But Tiffany is great and the stories of Grandma Aching are even better. This was not as good as Night Watch (very few things are), but it was well worth reading. Followed in publication order by Monstrous Regiment. The next Tiffany Aching novel is A Hat Full of Sky. Rating: 8 out of 10

24 June 2023

Russ Allbery: Review: Rose/House

Review: Rose/House, by Arkady Martine
Publisher: Subterranean Press
Copyright: 2023
ISBN: 1-64524-034-7
Format: Kindle
Pages: 109
Arkady Martine is the author of the wonderful Teixcalaan duology, a political space opera. Rose/House is a standalone science fiction novella in an entirely different subgenre. Basit Deniau was a legendary architect whose trademark was infusing his houses with artificial intelligences. A house AI is common in this future setting, but what Deniau did was another kind of genius. He has been dead for a year when this story opens. The carbon of his body has been compressed into diamond and displayed on a plinth deep inside his final creation. Rose House. Dr. Selene Gisil was his student. It was not a comfortable relationship. She is now the only person permitted entry into Rose House, allowed to examine its interior architecture and the archive of Deniau's work that is stored there. Once per year, she may enter for precisely one week. No one else in the world is permitted to enter, ever. Selene went in the first time she was allowed. She lasted three days before fleeing. There is a law in the United States, the Federal Artificial Intelligence Surveillance Act, that sets some requirements for the behavior of artificial intelligences. One of its requirements is a duty-of-care notification: an artificial intelligence must report the presence of a dead body to the nearest law enforcement agency. Rose House's call to the China Lake Police Precinct to report the presence of a dead body in the sealed house follows the requirements of the law to the letter.
"Cause of death," said Maritza. I'm a piece of architecture, Detective. How should I know how humans are like to die? After that the line went to the dull hang-up tone, and Rose House would not take her return calls. Not even once.
Rose/House has some of the structure of a locked-room mystery. Someone is dead, but no one at the scene can get inside the house to see who. Selene is the only person who can enter, but she was in Turkey at the time of the killing and has an air-tight alibi. How could someone be in the house at all? And how did they die? It also has some of the structure of a police procedural. First one and then the other detective of the tiny local precinct are pulled into the investigation, starting, as one might expect, by calling Selene Gisil. But I'm not sure I would describe this novella as following either of those genres. By the end of the story, we do learn some of the things one might expect to learn from a detective novel, but that never felt like the true thrust of the story. If you want a detailed explanation of what happened, or the pleasure of trying to guess the murderer before the story tells you, this may not be the novella for you. Instead, Martine was aiming for disturbing eeriness. This is not quite horror nothing explicitly horrific happens, although a couple of scenes are disturbing but Rose House is deeply unsettling. The best character of the story is Maritza, the detective initially assigned to the case, who is trying to ignore the weirdness and do her job. The way she approaches that task leads to some fascinating interactions with Rose House that I thought were the best parts of the story. This story was not really my thing, even though I love stories about sentient buildings and there are moments in this story where Rose House is delightfully nonhuman in exactly the way that I enjoy. The story is told in a way that requires the reader to piece together the details of the conclusion themselves, and I prefer more explicit explanation in stories that start with a puzzle. It's also a bit too close to horror for me, specifically in the way that the characters (Selene most notably) have disturbing and oddly intense emotional reactions to environments that are only partly described. But I read this a few weeks ago and I'm still thinking about it, so it clearly is doing something right. If you like horror, or at least half-explained eeriness, it's likely you will enjoy this more than I did. This portrayal of AI is an intriguing one, and I'd enjoy reading more about it in a story focused on character and plot rather than atmosphere. Rating: 6 out of 10

22 June 2023

Russ Allbery: Review: Furious Heaven

Review: Furious Heaven, by Kate Elliott
Series: Sun Chronicles #2
Publisher: Tor
Copyright: 2023
ISBN: 1-250-86701-0
Format: Kindle
Pages: 725
Furious Heaven is the middle book of a trilogy and a direct sequel to Unconquerable Sun. Don't start here. I also had some trouble remembering what happened in the previous book (grumble recaps mutter), and there are a lot of threads, so I would try to minimize the time between books unless you have a good memory for plot details. This is installment two of gender-swapped Alexander the Great in space. When we last left Sun and her Companions, Elliott had established the major players in this interstellar balance of power and set off some opening skirmishes, but the real battles were yet to come. Sun was trying to build her reputation and power base while carefully staying on the good side of Queen-Marshal Eirene, her mother and the person credited with saving the Republic of Chaonia from foreign dominance. The best parts of the first book weren't Sun herself but wily Persephone, one of her Companions, whose viewpoint chapters told a more human-level story of finding her place inside a close-knit pre-existing friendship group. Furious Heaven turns that all on its head. The details are spoilers (insofar as a plot closely tracking the life of Alexander the Great can contain spoilers), but the best parts of the second book are the chapters about or around Sun. What I find most impressive about this series so far is Elliott's ability to write Sun as charismatic in a way that I can believe as a reader. That was hit and miss at the start of the series, got better towards the end of Unconquerable Sun, and was wholly effective here. From me, that's high but perhaps unreliable praise; I typically find people others describe as charismatic to be some combination of disturbing, uncomfortable, dangerous, or obviously fake. This is a rare case of intentionally-written fictional charisma that worked for me. Elliott does not do this by toning down Sun's ambition. Sun, even more than her mother, is explicitly trying to gather power and bend the universe (and the people in it) to her will. She treats people as resources, even those she's the closest to, and she's ruthless in pursuit of her goals. But she's also honorable, straightforward, and generous to the people around her. She doesn't lie about her intentions; she follows a strict moral code of her own, keeps her friends' secrets, listens sincerely to their advice, and has the sort of battlefield charisma where she refuses to ask anyone else to take risks she personally wouldn't take. And her use of symbolism and spectacle isn't just superficial; she finds the points of connection between the symbols and her values so that she can sincerely believe in what she's doing. I am fascinated by how Elliott shapes the story around her charisma. Writing an Alexander analogue is difficult; one has to write a tactical genius with the kind of magnetic attraction that enabled him to lead an army across the known world, and make this believable to the reader. Elliott gives Sun good propaganda outlets and makes her astonishingly decisive (and, of course, uses the power of the author to ensure those decisions are good ones), but she also shows how Sun is constantly absorbing information and updating her assumptions to lay the groundwork for those split-second decisions. Sun uses her Companions like a foundation and a recovery platform, leaning on them and relying on them to gather her breath and flesh out her understanding, and then leaping from them towards her next goal. Elliott writes her as thinking just a tiny bit faster than the reader, taking actions I was starting to expect but slightly before I had put together my expectation. It's a subtle but difficult tightrope to walk as the writer, and it was incredibly effective for me. The downside of Furious Heaven is that, despite kicking the action into a much higher gear, this book sprawls. There are five viewpoint characters (Persephone and the Phene Empire character Apama from the first book, plus two new ones), as well as a few interlude chapters from yet more viewpoints. Apama's thread, which felt like a minor subplot of the first book, starts paying off in this book by showing the internal political details of Sun's enemy. That already means the reader has to track two largely separate and important stories. Add on a Persephone side plot about her family and a new plot thread about other political factions and it's a bit too much. Elliott does a good job avoiding reader confusion, but she still loses narrative momentum and reader interest due to the sheer scope. Persephone's thread in particular was a bit disappointing after being the highlight of the previous book. She spends a lot of her emotional energy on tedious and annoying sniping at Jade, which accomplishes little other than making them both seem immature and out of step with the significance of what's going on elsewhere. This is also a middle book of a trilogy, and it shows. It provides a satisfying increase in intensity and gets the true plot of the trilogy well underway, but nothing is resolved and a lot of new questions and plot threads are raised. I had similar problems with Cold Fire, the middle book of the other Kate Elliott trilogy I've read, and this book is 200 pages longer. Elliott loves world-building and huge, complex plots; I have a soft spot for them too, but they mean the story is full of stuff, and it's hard to maintain the same level of reader interest across all the complications and viewpoints. That said, I truly love the world-building. Elliott gives her world historical layers, with multiple levels of lost technology, lost history, and fallen empires, and backs it up with enough set pieces and fragments of invented history that I was enthralled. There are at least five major factions with different histories, cultures, and approaches to technology, and although they all share a history, they interpret that history in fascinatingly different ways. This world feels both lived in and full of important mysteries. Elliott also has a knack for backing the ambitions of her characters with symbolism that defines the shape of that ambition. The title comes from a (translated) verse of an in-universe song called the Hymn of Leaving, which is sung at funerals and is about the flight on generation ships from the now-lost Celestial Empire, the founding myth of this region of space:
Crossing the ocean of stars we leave our home behind us.
We are the spears cast at the furious heaven
And we will burn one by one into ashes
As with the last sparks we vanish.
This memory we carry to our own death which awaits us
And from which none of us will return.
Do not forget. Goodbye forever.
This is not great poetry, but it explains so much about the psychology of the characters. Sun repeatedly describes herself and her allies as spears cast at the furious heaven. Her mother's life mission was to make Chaonia a respected independent power. Hers is much more than that, reaching back into myth for stories of impossible leaps into space, burning brightly against the hostile power of the universe itself. A question about a series like this is why one should want to read about a gender-swapped Alexander the Great in space, rather than just reading about Alexander himself. One good (and sufficient) answer is that both the gender swap and the space parts are inherently interesting. But the other place that Elliott uses the science fiction background is to give Sun motives beyond sheer personal ambition. At a critical moment in the story, just like Alexander, Sun takes a detour to consult an Oracle. Because this is a science fiction novel, it's a great SF set piece involving a mysterious AI. But also because this is a science fiction story, Sun doesn't only ask about her personal ambitions. I won't spoil the exact questions; I think the moment is better not knowing what she'll ask. But they're science fiction questions, reader questions, the kinds of things Elliott has been building curiosity about for a book and a half by the time we reach that scene. Half the fun of reading a good epic space opera is learning the mysteries hidden in the layers of world-building. Aligning the goals of the protagonist with the goals of the reader is a simple storytelling trick, but oh, so effective. Structurally, this is not that great of a book. There's a lot of build-up and only some payoff, and there were several bits I found grating. But I am thoroughly invested in this universe now. The third book can't come soon enough. Followed by Lady Chaos, which is still being written at the time of this review. Rating: 7 out of 10

20 June 2023

Vasudev Kamath: Notes: Experimenting with ZRAM and Memory Over commit

Introduction The ZRAM module in the Linux kernel creates a memory-backed block device that stores its content in a compressed format. It offers users the choice of compression algorithms such as lz4, zstd, or lzo. These algorithms differ in compression ratio and speed, with zstd providing the best compression but being slower, while lz4 offers higher speed but lower compression.
Using ZRAM as Swap One interesting use case for ZRAM is utilizing it as swap space in the system. There are two utilities available for configuring ZRAM as swap: zram-tools and systemd-zram-generator. However, Debian Bullseye lacks systemd-zram-generator, making zram-tools the only option for Bullseye users. While it's possible to use systemd-zram-generator by self-compiling or via cargo, I preferred using tools available in the distribution repository due to my restricted environment.
Installation The installation process is straightforward. Simply execute the following command:
apt-get install zram-tools
Configuration The configuration involves modifying a simple shell script file /etc/default/zramswap sourced by the /usr/bin/zramswap script. Here's an example of the configuration I used:
# Compression algorithm selection
# Speed: lz4 > zstd > lzo
# Compression: zstd > lzo > lz4
# This is not inclusive of all the algorithms available in the latest kernels
# See /sys/block/zram0/comp_algorithm (when the zram module is loaded) to check
# the currently set and available algorithms for your kernel [1]
# [1]  https://github.com/torvalds/linux/blob/master/Documentation/blockdev/zram.txt#L86
ALGO=zstd
# Specifies the amount of RAM that should be used for zram
# based on a percentage of the total available memory
# This takes precedence and overrides SIZE below
PERCENT=30
# Specifies a static amount of RAM that should be used for
# the ZRAM devices, measured in MiB
# SIZE=256000
# Specifies the priority for the swap devices, see swapon(2)
# for more details. A higher number indicates higher priority
# This should probably be higher than hdd/ssd swaps.
# PRIORITY=100
I chose zstd as the compression algorithm for its superior compression capabilities. Additionally, I reserved 30% of memory as the size of the zram device. After modifying the configuration, restart the zramswap.service to activate the swap:
systemctl restart zramswap.service
Using systemd-zram-generator For Debian Bookworm users, an alternative option is systemd-zram-generator. Although zram-tools is still available in Debian Bookworm, systemd-zram-generator offers a more integrated solution within the systemd ecosystem. Below is an example of the translated configuration for systemd-zram-generator, located at /etc/systemd/zram-generator.conf:
# This config file enables a /dev/zram0 swap device with the following
# properties:
# * size: 50% of available RAM or 4GiB, whichever is less
# * compression-algorithm: kernel default
#
# This device's properties can be modified by adding options under the
# [zram0] section below. For example, to set a fixed size of 2GiB, set
#  zram-size = 2GiB .
[zram0]
zram-size = ceil(ram * 30/100)
compression-algorithm = zstd
swap-priority = 100
fs-type = swap
After making the necessary changes, reload systemd and start the systemd-zram-setup@zram0.service:
systemctl daemon-reload
systemctl start systemd-zram-setup@zram0.service
The systemd-zram-generator creates the zram device by loading the kernel module and then creates a systemd.swap unit to mount the zram device as swap. In this case, the swap file is called zram0.swap.
Checking Compression and Details To verify the effectiveness of the swap configuration, you can use the zramctl command, which is part of the util-linux package. Alternatively, the zramswap utility provided by zram-tools can be used to obtain the same output. During my testing with synthetic memory load created using stress-ng vm class I found that I can reach upto 40% compression ratio.
Memory Overcommit Another use case I was looking for is allowing the launching of applications that require more memory than what is available in the system. By default, the Linux kernel attempts to estimate the amount of free memory left on the system when user space requests more memory (vm.overcommit_memory=0). However, you can change this behavior by modifying the sysctl value for vm.overcommit_memory to 1. To demonstrate this, I ran a test using stress-ng to request more memory than the system had available. As expected, the Linux kernel refused to allocate memory, and the stress-ng process could not proceed.
free -tg                                                                                                                                                                                          (Mon,Jun19) 
                total        used        free      shared  buff/cache   available
 Mem:              31          12          11           3          11          18
 Swap:             10           2           8
 Total:            41          14          19
sudo stress-ng --vm=1 --vm-bytes=50G -t 120                                                                                                                                                       (Mon,Jun19) 
 stress-ng: info:  [1496310] setting to a 120 second (2 mins, 0.00 secs) run per stressor
 stress-ng: info:  [1496310] dispatching hogs: 1 vm
 stress-ng: info:  [1496312] vm: gave up trying to mmap, no available memory, skipping stressor
 stress-ng: warn:  [1496310] vm: [1496311] aborted early, out of system resources
 stress-ng: info:  [1496310] vm:
 stress-ng: warn:  [1496310]         14 System Management Interrupts
 stress-ng: info:  [1496310] passed: 0
 stress-ng: info:  [1496310] failed: 0
 stress-ng: info:  [1496310] skipped: 1: vm (1)
 stress-ng: info:  [1496310] successful run completed in 10.04s
By setting vm.overcommit_memory=1, Linux will allocate memory in a more relaxed manner, assuming an infinite amount of memory is available.
Conclusion ZRAM provides disks that allow for very fast I/O, and compression allows for a significant amount of memory savings. ZRAM is not restricted to just swap usage; it can be used as a normal block device with different file systems. Using ZRAM as swap is beneficial because, unlike disk-based swap, it is faster, and compression ensures that we use a smaller amount of RAM itself as swap space. Additionally, adjusting the memory overcommit settings can be beneficial for scenarios that require launching memory-intensive applications. Note: When running stress tests or allocating excessive memory, be cautious about the actual memory capacity of your system to prevent out-of-memory (OOM) situations. Feel free to explore the capabilities of ZRAM and optimize your system's memory management. Happy computing!

18 June 2023

Louis-Philippe V ronneau: Solo V2: nice but flawed

EDIT: One of my 2 keys has died. There are what seems like golden bubbles under the epoxy, over one of the chips and those were not there before. I've emailed SoloKeys and I'm waiting for a reply, but for now, I've stopped using the Solo V2 altogether :( I recently received the two Solo V2 hardware tokens I ordered as part of their crowdfunding campaign, back in March 2022. It did take them longer than advertised to ship me the tokens, but that's hardly unexpected from such small-scale, crowdfunded undertaking. I'm mostly happy about my purchase and I'm glad to get rid of the aging Tomu boards I was using as U2F tokens1. Still, beware: I am not sure it's a product I would recommend if what you want is simply something that works. If you do not care about open-source hardware, the Solo V2 is not for you. The Good A side-by-side view of the Solo V2's top and back sides I first want to mention I find the Solo V2 gorgeous. I really like the black and gold color scheme of the USB-A model (which is reversible!) and it seems like a well built and solid device. I'm not afraid to have it on my keyring and I fully expect it to last a long time. An animation of the build process, showing how the PCB is assembled and then slotted into the shell I'm also very impressed by the modular design: the PCB sits inside a shell, which decouples the logic from the USB interface and lets them manufacture a single board for both the USB-C and USB-A models. The clear epoxy layer on top of the PCB module also looks very nice in my opinion. A picture of the Solo V2 with its silicone case on my keyring, showing the 3 capacitive buttons I'm also very happy the Solo V2 has capacitive touch buttons instead of physical "clicky" buttons, as it means the device has no moving parts. The token has three buttons (the gold metal strips): one on each side of the device and a third one near the keyhole. As far as I've seen, the FIDO2 functions seem to work well via the USB interface and do not require any configuration on a Debian 12 machine. I've already migrated to the Solo V2 for web-based 2FA and I am in the process of migrating to an SSH ed25519-sk key. Here is a guide I recommend if you plan on setting those up with a Solo V2. The Bad and the Ugly Sadly, the Solo V2 is far from being a perfect project. First of all, since the crowdfunding campaign is still being fulfilled, it is not currently commercially available. Chances are you won't be able to buy one directly before at least Q4 2023. I've also hit what seems to be a pretty big firmware bug, or at least, one that affects my use case quite a bit. Invoking gpg crashes the Solo V2 completely if you also have scdaemon installed. Since scdaemon is necessary to use gpg with an OpenPGP smartcard, this means you cannot issue any gpg commands (like signing a git commit...) while the Solo V2 is plugged in. Any gpg commands that queries scdaemon, such as gpg --edit-card or gpg --sign foo.txt times out after about 20 seconds and leaves the token unresponsive to both touch and CLI commands. The way to "fix" this issue is to make sure scdaemon does not interact with the Solo V2 anymore, using the reader-port argument:
  1. Plug both your Solo V2 and your OpenPGP smartcard
  2. To get a list of the tokens scdaemon sees, run the following command: $ echo scd getinfo reader_list gpg-connect-agent --decode awk '/^D/ print $2 '
  3. Identify your OpenPGP smartcard. For example, my Nitrokey Start is listed as 20A0:4211:FSIJ-1.2.15-43211613:0
  4. Create a file in ~/.gnupg/scdaemon.conf with the following line reader-port $YOUR_TOKEN_ID. For example, in my case I have: reader-port 20A0:4211:FSIJ-1.2.15-43211613:0
  5. Reload scdaemon: $ gpgconf --reload scdaemon
Although this is clearly a firmware bug2, I do believe GnuPG is also partly to blame here. Let's just say I was not very surprised to have to battle scdaemon again, as I've had previous issues with it. Which leads me to my biggest gripe so far: it seems SoloKeys (the company) isn't really fixing firmware issues anymore and doesn't seems to care. The last firmware release is about a year old. Although people are experiencing serious bugs, there is no official way to report them, which leads to issues being seemingly ignored. For example, the NFC feature is apparently killing keys (!!!), but no one from the company seems to have acknowledged the issue. The same goes for my GnuPG bug, which was flagged in September 2022. For a project that mainly differentiates itself from its (superior) competition by being "Open", it's not a very good look... Although SoloKeys is still an unprofitable open source side business of its creators 3, this kind of attitude certainly doesn't help foster trust. Conclusion If you want to have a nice, durable FIDO2 token, I would suggest you get one of the many models Yubico offers. They are similarly priced, are readily commercially available, are part of a nice and maintained software ecosystem and have more features than the Solo V2 (OpenPGP support being the one I miss the most). Yubikeys are the practical option. What they are not is open-source hardware, whereas the Solo V2 is. As bunnie very well explained on his blog in 2019, it does not mean the later is inherently more trustable than the former, but it does make the Solo V2 the ideological option. Knowledge is power and it should be free. As such, tread carefully with SoloKeys, but don't dismiss them altogether: the Solo V2 is certainly functioning well enough for me.

  1. Although U2F is still part of the FIDO2 specification, the Tomus predate this standard and were thus not fully compliant with FIDO2. So long and thanks for all the fish little boards, you've served me well!
  2. It appears the Solo V2 shares its firmware with the Nitrokey 3, which had a similar issue a while back.
  3. This is a direct quote from one of the Solo V2 firmware maintainers.

17 June 2023

Bastian Venthur: Blag 2.0 released

A few days ago, I released a major update on blag, my blog-aware static-site generator, which introduces a few backwards-incompatible changes and many improvements over the old version. Good-looking default theme The old bare-bones default theme has been replaced with a good-looking one, based on the one used on this blog: Blag Screenshot It comes with a light- and dark theme that switches automatically based on the browser setting, as well as fitting light- and dark syntax highlighting themes for code blocks. Improved quickstart The blag quickstart command has been improved. Additionally to generating the configuration, it now also populates the working directory with the templates-, static- and content directories, containing the updated default theme and a few content pages to get you started. No internal fallback templates anymore Related to the changes in quickstart, the internal fallback template has been removed, and blag now completely relies on the templates in the local templates directory. This makes it more transparent for the user what is happening while simplifying blag s internal logic. However, this is a backwards incompatible change! In the case of a missing template, the user will be warned with a hint on how to obtain the missing template. Index and archive are now separate Previously, the front-page would always show the archive of all articles. This is not very useful when your blog contains more than a few dozen articles. With blag 2.0, the previous archive has been split into index and archive, where index is the front-page showing only the most recent 15 articles by default and linking to the archive which shows all articles. There s also two corresponding templates in the templates directory. Miscellaneous Blag 2.0 is available on pypi, debian/unstable and github

John Goerzen: Using dar for Data Archiving

This is the third post in a series about data archiving to removable media (optical discs and hard drives). In the first, I explained the difference between backing up and archiving, established goals for the project, and said I d evaluate git-annex and dar. The second post evaluated git-annex, and now it s time to look at dar. The series will conclude with a post comparing git-annex with dar. What is dar? I could open with the same thing I did with git-annex, just changing the name of the program: [dar] is a fantastic and versatile program that does well, it s one of those things that can do so much that it s a bit hard to describe. It is, fundamentally, an archiver like tar or zip (makes one file representing a bunch of other files), but it goes far beyond that. dar s homepage lays out a comprehensive list of features, which I will try to summarize here. So to tie this together for this project, I will set up a 400MB slice size (to mimic what I did with git-annex), and see how dar saves the data and restores it. Isolated cataloges aren t strictly necessary for this, but by using them (and/or dar_manager), we can build up a database of files and locations and thus directly compare dar to git-annex location tracking. Walkthrough: Creating the first archive As with the git-annex walkthrough, I ll set some variables to make it easy to remember: OK, we can run the backup immediately. No special setup is needed. dar supports both short-form (single-character) parameters and long-form ones. Since the parameters probably aren t familiar to everyone, I will use the long-form ones in these examples. Here s how we create our initial full backup. I ll explain the parameters below:
$ dar \
--verbose \
--create $DRIVE/bak1 \
--on-fly-isolate $CATDIR/bak1 \
--slice 400M \
--min-digits 2 \
--pause \
--fs-root $SOURCEDIR
Let s look at each of these parameters: This same command could have been written with short options as:
$ dar -v -c $DRIVE/bak1 -@ $CATDIR/bak1 -s 400M -9 2 -p -R $SOURCEDIR
What does it look like while running? Here s an excerpt:
...
Adding file to archive: /acrypt/no-backup/jgoerzen/testdata/[redacted]
Finished writing to file 1, ready to continue ? [return = YES Esc = NO]
...
Writing down archive contents...
Closing the escape layer...
Writing down the first archive terminator...
Writing down archive trailer...
Writing down the second archive terminator...
Closing archive low layer...
Archive is closed.
--------------------------------------------
581 inode(s) saved
including 0 hard link(s) treated
0 inode(s) changed at the moment of the backup and could not be saved properly
0 byte(s) have been wasted in the archive to resave changing files
0 inode(s) with only metadata changed
0 inode(s) not saved (no inode/file change)
0 inode(s) failed to be saved (filesystem error)
0 inode(s) ignored (excluded by filters)
0 inode(s) recorded as deleted from reference backup
--------------------------------------------
Total number of inode(s) considered: 581
--------------------------------------------
EA saved for 0 inode(s)
FSA saved for 581 inode(s)
--------------------------------------------
Making room in memory (releasing memory used by archive of reference)...
Now performing on-fly isolation...
...
That was easy! Let s look at the contents of the backup directory:
$ ls -lh $DRIVE
total 3.7G
-rw-r--r-- 1 jgoerzen jgoerzen 400M Jun 16 19:27 bak1.01.dar
-rw-r--r-- 1 jgoerzen jgoerzen 400M Jun 16 19:27 bak1.02.dar
-rw-r--r-- 1 jgoerzen jgoerzen 400M Jun 16 19:27 bak1.03.dar
-rw-r--r-- 1 jgoerzen jgoerzen 400M Jun 16 19:27 bak1.04.dar
-rw-r--r-- 1 jgoerzen jgoerzen 400M Jun 16 19:28 bak1.05.dar
-rw-r--r-- 1 jgoerzen jgoerzen 400M Jun 16 19:28 bak1.06.dar
-rw-r--r-- 1 jgoerzen jgoerzen 400M Jun 16 19:28 bak1.07.dar
-rw-r--r-- 1 jgoerzen jgoerzen 400M Jun 16 19:28 bak1.08.dar
-rw-r--r-- 1 jgoerzen jgoerzen 400M Jun 16 19:29 bak1.09.dar
-rw-r--r-- 1 jgoerzen jgoerzen 156M Jun 16 19:33 bak1.10.dar
And the isolated catalog:
$ ls -lh $CATDIR
total 37K
-rw-r--r-- 1 jgoerzen jgoerzen 35K Jun 16 19:33 bak1.1.dar
The isolated catalog is stored compressed automatically. Well this was easy. With one command, we archived the entire data set, split into 400MB chunks, and wrote out the catalog data. Walkthrough: Inspecting the saved archive Can dar tell us which slice contains a given file? Sure:
$ dar --list $DRIVE/bak1 --list-format=slicing less
Slice(s) [Data ][D][ EA ][FSA][Compr][S] Permission Filemane
--------+--------------------------------+----------+-----------------------------
...
1 [Saved][ ] [-L-][ 0%][X] -rwxr--r-- [redacted]
1-2 [Saved][ ] [-L-][ 0%][X] -rwxr--r-- [redacted]
2 [Saved][ ] [-L-][ 0%][X] -rwxr--r-- [redacted]
...
This illustrates the transition from slice 1 to slice 2. The first file was stored entirely in slice 1; the second stored partially in slice 1 and partially in slice 2, and third solely in slice 2. We can get other kinds of information as well.
$ dar --list $DRIVE/bak1 less
[Data ][D][ EA ][FSA][Compr][S] Permission User Group Size Date filename
--------------------------------+------------+-------+-------+---------+-------------------------------+------------
[Saved][ ] [-L-][ 0%][X] -rwxr--r-- jgoerzen jgoerzen 24 Mio Mon Mar 5 07:58:09 2018 [redacted]
[Saved][ ] [-L-][ 0%][X] -rwxr--r-- jgoerzen jgoerzen 16 Mio Mon Mar 5 07:58:09 2018 [redacted]
[Saved][ ] [-L-][ 0%][X] -rwxr--r-- jgoerzen jgoerzen 22 Mio Mon Mar 5 07:58:09 2018 [redacted]
These are the same files I was looking at before. Here we see they are 24MB, 16MB, and 22MB in size, and some additional metadata. Even more is available in the XML list format. Walkthrough: updates As with git-annex, I ve made some changes in the source directory: moved a file, added another, and deleted one. Let s create an incremental backup now:
$ dar \
--verbose \
--create $DRIVE/bak2 \
--on-fly-isolate $CATDIR/bak2 \
--ref $CATDIR/bak1 \
--slice 400M \
--min-digits 2 \
--pause \
--fs-root $SOURCEDIR
This command is very similar to the earlier one. Instead of writing an archive and catalog named bak1, we write one named bak2. What s new here is --ref $CATDIR/bak1. That says, make an incremental based on an archive of reference. All that is needed from that archive of reference is the detached catalog. --ref $DRIVE/bak1 would have worked equally well here. Here s what I did to the $SOURCEDIR: Let s see if dar s command output matches this:
...
Adding file to archive: /acrypt/no-backup/jgoerzen/testdata/file01-unchanged
Saving Filesystem Specific Attributes for /acrypt/no-backup/jgoerzen/testdata/file01-unchanged
Adding file to archive: /acrypt/no-backup/jgoerzen/testdata/cp
Saving Filesystem Specific Attributes for /acrypt/no-backup/jgoerzen/testdata/cp
Adding folder to archive: [redacted]
Saving Filesystem Specific Attributes for [redacted]
Adding reference to files that have been destroyed since reference backup...
...
--------------------------------------------
3 inode(s) saved
including 0 hard link(s) treated
0 inode(s) changed at the moment of the backup and could not be saved properly
0 byte(s) have been wasted in the archive to resave changing files
0 inode(s) with only metadata changed
578 inode(s) not saved (no inode/file change)
0 inode(s) failed to be saved (filesystem error)
0 inode(s) ignored (excluded by filters)
2 inode(s) recorded as deleted from reference backup
--------------------------------------------
Total number of inode(s) considered: 583
--------------------------------------------
EA saved for 0 inode(s)
FSA saved for 3 inode(s)
--------------------------------------------
...
Yes, it does. The rename is recorded as a deletion and an addition, since dar doesn t directly track renames. So the rename plus the deletion account for the two deletions. The rename plus the addition of cp count as 2 of the 3 inodes saved; the third is the modified directory from which files were deleted and moved out. Let s see the files that were created:
$ ls -lh $DRIVE/bak2*
-rw-r--r-- 1 jgoerzen jgoerzen 18M Jun 16 19:52 /acrypt/no-backup/jgoerzen/dar-testing/drive/bak2.01.dar
$ ls -lh $CATDIR/bak2*
-rw-r--r-- 1 jgoerzen jgoerzen 22K Jun 16 19:52 /acrypt/no-backup/jgoerzen/dar-testing/cat/bak2.1.dar
What does list look like now?
Slice(s) [Data ][D][ EA ][FSA][Compr][S] Permission Filemane
--------+--------------------------------+----------+-----------------------------
[ ][ ] [---][-----][X] -rwxr--r-- [redacted]
1 [Saved][ ] [-L-][ 0%][X] -rwxr--r-- file01-unchanged
...
[--- REMOVED ENTRY ----][redacted]
[--- REMOVED ENTRY ----][redacted]
Here I show an example of:
  1. A file that was not changed from the initial backup. Its presence was simply noted, but because we re doing an incremental, the data wasn t saved.
  2. A file that is saved in this incremental, on slice 1.
  3. The two deleted files
Walkthrough: dar_manager As we ve seen above, the two archives (or their detached catalog) give us a complete picture of what files were present at the time of the creation of each archive, and what files were stored in a given archive. We can certainly continue working in that way. We can also use dar_manager to build a comprehensive database of these archives, to be able to find what media is necessary to restore each given file. Or, with dar_manager s when parameter, we can restore files as of a particular date. Let s try it out. First, we create our database:
$ dar_manager --create $DARDB
$ dar_manager --base $DARDB --add $DRIVE/bak1
Auto detecting min-digits to be 2
$ dar_manager --base $DARDB --add $DRIVE/bak2
Auto detecting min-digits to be 2
Here we created the database, and added our two catalogs to it. (Again, we could have as easily used $CATDIR/bak1; either the archive or its isolated catalog will work here.) It s important to add the catalogs in order. Let s do some quick experimentation with dar_manager:
$ dar_manager -v --base $DARDB --list
Decompressing and loading database to memory...
dar path :
dar options :
database version : 6
compression used : gzip
compression level: 9 archive # path basename
------------+--------------+---------------
1 /acrypt/no-backup/jgoerzen/dar-testing/drive bak1
2 /acrypt/no-backup/jgoerzen/dar-testing/drive bak2
$ dar_manager --base $DARDB --stat
archive # most recent/total data most recent/total EA
--------------+-------------------------+-----------------------
1 580/581 0/0
2 3/3 0/0
The list option shows the correlation between dar_manager archive number (1, 2) with filenames (bak1, bak2). It is coincidence here that 1/bak1 and 2/bak2 correlate; that s not necessarily the case. Most dar_manager commands operate on archive number, while dar commands operate on archive path/basename. Now let s see just what files are saved in archive , the incremental:
$ dar_manager --base $DARDB --used 2
[ Saved ][ ] [redacted]
[ Saved ][ ] file01-unchanged
[ Saved ][ ] cp
Now we can also where a file is stored. Here s one that was saved in the full backup and unmodified in the incremental:
$ dar_manager --base $DARDB --file [redacted]
1 Fri Jun 16 19:15:12 2023 saved absent
2 Fri Jun 16 19:15:12 2023 present absent
(The absent at the end refers to extended attributes that the file didn t have) Similarly, for files that were added or removed, they ll be listed only at the appropriate place. Walkthrough: Restoration I m not going to repeat the author s full restoration with dar page, but here are some quick examples. A simple way of doing everything is using incrementals for the whole series. To do that, you d have bak1 be full, bak2 based on bak1, bak3 based on bak2, bak4 based on bak3, etc. To restore from such a series, you have two options: If you get fancy for instance, bak2 is based on bak1, bak3 on bak2, bak4 on bak1 then you would want to use dar_manager to ensure a consistent restore is completed. Either way, the process is nearly identical. Also, I figure, to make things easy, you can save a copy of the entire set of isolated catalogs before you finalize each disc/drive. They re so small, and this would let someone with just the most recent disc build a dar_manager database without having to go through all the other discs. Anyhow, let s do a restore using just dar. I ll make a $RESTOREDIR and do it that way.
$ dar \
--verbose \
--extract $DRIVE/bak1 \
--fs-root $RESTOREDIR \
--no-warn \
--execute "echo Ready for slice %n. Press Enter; read foo"
This execute lets us see how dar works; this is an illustration of the power it has (above pause); it s a snippet interpreted by /bin/sh with %n being one of the dar placeholders. If memory serves, it s not strictly necessary, as dar will prompt you for slices it needs if they re not mounted. Anyhow, you ll see it first reading the last slice, which contains the catalog, then reading from the beginning. Here we go:
Auto detecting min-digits to be 2
Opening archive bak1 ...
Opening the archive using the multi-slice abstraction layer...
Ready for slice 10. Press Enter
...
Loading catalogue into memory...
Locating archive contents...
Reading archive contents...
File ownership will not be restored du to the lack of privilege, you can disable this message by asking not to restore file ownership [return = YES Esc = NO]
Continuing...
Restoring file's data: [redacted]
Restoring file's FSA: [redacted]
Ready for slice 1. Press Enter
...
Ready for slice 2. Press Enter
...
--------------------------------------------
581 inode(s) restored
including 0 hard link(s)
0 inode(s) not restored (not saved in archive)
0 inode(s) not restored (overwriting policy decision)
0 inode(s) ignored (excluded by filters)
0 inode(s) failed to restore (filesystem error)
0 inode(s) deleted
--------------------------------------------
Total number of inode(s) considered: 581
--------------------------------------------
EA restored for 0 inode(s)
FSA restored for 0 inode(s)
--------------------------------------------
The warning is because I m not doing the extraction as root, which limits dar s ability to fully restore ownership data. OK, now the incremental:
$ dar \
--verbose \
--extract $DRIVE/bak2 \
--fs-root $RESTOREDIR \
--no-warn \
--execute "echo Ready for slice %n. Press Enter; read foo"
...
Ready for slice 1. Press Enter
...
Restoring file's data: /acrypt/no-backup/jgoerzen/dar-testing/restore/file01-unchanged
Restoring file's FSA: /acrypt/no-backup/jgoerzen/dar-testing/restore/file01-unchanged
Restoring file's data: /acrypt/no-backup/jgoerzen/dar-testing/restore/cp
Restoring file's FSA: /acrypt/no-backup/jgoerzen/dar-testing/restore/cp
Restoring file's data: /acrypt/no-backup/jgoerzen/dar-testing/restore/[redacted directory]
Removing file (reason is file recorded as removed in archive): [redacted file]
Removing file (reason is file recorded as removed in archive): [redacted file]
This all looks right! Now how about we compare the restore to the original source directory?
$ diff -durN $SOURCEDIR $RESTOREDIR
No changes perfect. We could instead do this restore via a single dar_manager command, though annoyingly, we d have to pass all top-level files/directories to dar_manager restore. But still, it s one command, and basically automates and optimizes the dar restores shown above. Conclusions Dar makes it extremely easy to just Do The Right Thing when making archives. One command makes a backup. It saves things in simple files. You can make an isolated catalog if you want, and it too is saved in a simple file. You can query what is in the files and where. You can restore from all or part of the files. You can simply play the backups forward, in order, to achieve a full and consistent restore. Or you can load data about them into dar_manager for an optimized restore. A bit of scripting will be necessary to make incrementals; finding the most recent backup or catalog. If backup files are named with care for instance, by date then this should be a pretty easy task. I haven t touched on resiliency yet. dar comes with tools for recovering archives that have had portions corrupted or lost. It can also rebuild the catalog if it is corrupted or lost. It adds tape marks (or escape sequences ) to the archive along with the data stream. So every entry in the catalog is actually stored in the archive twice: once alongside the file data, and once at the end in the collected catalog. This allows dar to scan a corrupted file for the tape marks and reconstruct whatever is still intact, even if the catalog is lost. dar also integrates with tools like sha256sum and par2 to simplify archive integrity testing and restoration. This balances against the need to use a tool (dar, optionally with a GUI frontend) to restore files. I ll discuss that more in the next post.

16 June 2023

John Goerzen: Using git-annex for Data Archiving

In my recent post about data archiving to removable media, I laid out the difference between backing up and archiving, and also said I d evaluate git-annex and dar. This post evaluates git-annex. The next will look at dar, and then I ll make a comparison post. What is git-annex? git-annex is a fantastic and versatile program that does well, it s one of those things that can do so much that it s a bit hard to describe. Its homepage says:
git-annex allows managing large files with git, without storing the file contents in git. It can sync, backup, and archive your data, offline and online. Checksums and encryption keep your data safe and secure. Bring the power and distributed nature of git to bear on your large files with git-annex.
I think the particularly interesting features of git-annex aren t actually included in that list. Among the features of git-annex that make it shine for this purpose, its location tracking is key. git-annex can know exactly which device has which file at which version at all times. Combined with its preferred content settings, this lets you very easily say things like: git-annex can be set to allow a configurable amount of free space to remain on a device, and it will fill it up with whatever copies are necessary up until it hits that limit. Very convenient! git-annex will store files in a folder structure that mirrors the origin folder structure, in plain files just as they were. This maximizes the ability for a future person to access the content, since it is all viewable without any special tool at all. Of course, for things like optical media, git-annex will essentially be creating what amounts to incrementals. To obtain a consistent copy of the original tree, you would still need to use git-annex to process (export) the archives. git-annex challenges In my prior post, I related some challenges with git-annex. The biggest of them quite poor performance of the directory special remote when dealing with many files has been resolved by Joey, git-annex s author! That dramatically improves the git-annex use scenario here! The fixing commit is in the source tree but not yet in a release. git-annex no doubt may still have performance challenges with repositories in the 100,000+-range, but in that order of magnitude it now looks usable. I m not sure about 1,000,000-file repositories (I haven t tested); there is a page about scalability. A few other more minor challenges remain: I worked around the timestamp issue by using the mtree-netbsd package in Debian. mtree writes out a summary of files and metadata in a tree, and can restore them. To save: mtree -c -R nlink,uid,gid,mode -p /PATH/TO/REPO -X <(echo './.git') > /tmp/spec And, after restoration, the timestamps can be applied with: mtree -t -U -e < /tmp/spec Walkthrough: initial setup To use git-annex in this way, we have to do some setup. My general approach is this: Let's get started! I've set all these shell variables appropriately for this example, and REPONAME to "testdata". We'll begin by setting up the metadata-only tracking repo.
$ REPONAME=testdata
$ mkdir "$METAREPO"
$ cd "$METAREPO"
$ git init
$ git config annex.thin true
There is a sort of complicated topic of how git-annex stores files in a repo, which varies depending on whether the data for the file is present in a given repo, and whether the file is locked or unlocked. Basically, the options I use here cause git-annex to mostly use hard links instead of symlinks or pointer files, for maximum compatibility with non-POSIX filesystems such as NTFS and UDF, which might be used on these devices. thin is part of that. Let's continue:
$ git annex init 'local hub'
init local hub ok
(recording state in git...)
$ git annex wanted . "include=* and exclude=$REPONAME/*"
wanted . ok
(recording state in git...)
In a bit, we are going to import the source data under the directory named $REPONAME (here, testdata). The wanted command says: in this repository (represented by the bare dot), the files we want are matched by the rule that says eveyrthing except what's under $REPONAME. In other words, we don't want to make an unnecessary copy here. Because I expect to use an mtree file as documented above, and it is not under $REPONAME/, it will be included. Let's just add it and tweak some things.
$ touch mtree
$ git annex add mtree
add mtree
ok
(recording state in git...)
$ git annex sync
git-annex sync will change default behavior to operate on --content in a future version of git-annex. Recommend you explicitly use --no-content (or -g) to prepare for that change. (Or you can configure annex.synccontent)
commit
[main (root-commit) 6044742] git-annex in local hub
1 file changed, 1 insertion(+)
create mode 120000 mtree
ok
$ ls -l
total 9
lrwxrwxrwx 1 jgoerzen jgoerzen 178 Jun 15 22:31 mtree -> .git/annex/objects/pX/ZJ/...
OK! We've added a file, and it got transformed into a symlink. That's the thing I said we were going to avoid, so:
git annex adjust --unlock-present
adjust
Switched to branch 'adjusted/main(unlockpresent)'
ok
$ ls -l
total 1
-rw-r--r-- 2 jgoerzen jgoerzen 0 Jun 15 22:31 mtree
You'll notice it transformed into a hard link (nlinks=2) file. Great! Now let's import the source data. For that, we'll use the directory special remote.
$ git annex initremote source type=directory directory=$SOURCEDIR importtree=yes \
encryption=none
initremote source ok
(recording state in git...)
$ git annex enableremote source directory=$SOURCEDIR
enableremote source ok
(recording state in git...)
$ git config remote.source.annex-readonly true
$ git config annex.securehashesonly true
$ git config annex.genmetadata true
$ git config annex.diskreserve 100M
$ git config remote.source.annex-tracking-branch main:$REPONAME
OK, so here we created a new remote named "source". We enabled it, and set some configuration. Most notably, that last line causes files from "source" to be imported under $REPONAME/ as we wanted earlier. Now we're ready to scan the source.
$ git annex sync
At this point, you'll see git-annex computing a hash for every file in the source directory. I can verify with du that my metadata-only repo only uses 14MB of disk space, while my source is around 4GB. Now we can see what git-annex thinks about file locations:
$ git-annex whereis less
whereis mtree (1 copy)
8aed01c5-da30-46c0-8357-1e8a94f67ed6 -- local hub [here]
ok
whereis testdata/[redacted] (0 copies)
The following untrusted locations may also have copies:
9e48387e-b096-400a-8555-a3caf5b70a64 -- [source]
failed
... many more lines ...
So remember we said we wanted mtree, but nothing under testdata, under this repo? That's exactly what we got. git-annex knows that the files under testdata can be found under the "source" special remote, but aren't in any git-annex repo -- yet. Now we'll start adding them. Walkthrough: removable drives I've set up two 500MB filesystems to represent removable drives. We'll see how git-annex works with them.
$ cd $DRIVE01
$ df -h .
Filesystem Size Used Avail Use% Mounted on
acrypt/no-backup/annexdrive01 500M 1.0M 499M 1% /acrypt/no-backup/annexdrive01
$ git clone $METAREPO
Cloning into 'testdata'...
done.
$ cd $REPONAME
$ git config annex.thin true
$ git annex init "test drive #1"
$ git annex adjust --hide-missing --unlock
adjust
Switched to branch 'adjusted/main(hidemissing-unlocked)'
ok
$ git annex sync
OK, that's the initial setup. Now let's enable the source remote and configure it the same way we did before:
$ git annex enableremote source directory=$SOURCEDIR
enableremote source ok
(recording state in git...)
$ git config remote.source.annex-readonly true
$ git config remote.source.annex-tracking-branch main:$REPONAME
$ git config annex.securehashesonly true
$ git config annex.genmetadata true
$ git config annex.diskreserve 100M
Now, we'll add the drive to a group called "driveset01" and configure what we want on it:
$ git annex group . driveset01
$ git annex wanted . '(not copies=driveset01:1)'
What this does is say: first of all, this drive is in a group named driveset01. Then, this drive wants any files for which there isn't already at least one copy in driveset01. Now let's load up some files!
$ git annex sync --content
As the messages fly by from here, you'll see it mentioning that it got mtree, and then various files from "source" -- until, that is, the filesystem had less than 100MB free, at which point it complained of no space for the rest. Exactly like we wanted! Now, we need to teach $METAREPO about $DRIVE01.
$ cd $METAREPO
$ git remote add drive01 $DRIVE01/$REPONAME
$ git annex sync drive01
git-annex sync will change default behavior to operate on --content in a future version of git-annex. Recommend you explicitly use --no-content (or -g) to prepare for that change. (Or you can configure annex.synccontent)
commit
On branch adjusted/main(unlockpresent)
nothing to commit, working tree clean
ok
merge synced/main (Merging into main...)
Updating d1d9e53..817befc
Fast-forward
(Merging into adjusted branch...)
Updating 7ccc20b..861aa60
Fast-forward
ok
pull drive01
remote: Enumerating objects: 214, done.
remote: Counting objects: 100% (214/214), done.
remote: Compressing objects: 100% (95/95), done.
remote: Total 110 (delta 6), reused 0 (delta 0), pack-reused 0
Receiving objects: 100% (110/110), 13.01 KiB 1.44 MiB/s, done.
Resolving deltas: 100% (6/6), completed with 6 local objects.
From /acrypt/no-backup/annexdrive01/testdata
* [new branch] adjusted/main(hidemissing-unlocked) -> drive01/adjusted/main(hidemissing-unlocked)
* [new branch] adjusted/main(unlockpresent) -> drive01/adjusted/main(unlockpresent)
* [new branch] git-annex -> drive01/git-annex
* [new branch] main -> drive01/main
* [new branch] synced/main -> drive01/synced/main
ok
OK! This step is important, because drive01 and drive02 (which we'll set up shortly) won't necessarily be able to reach each other directly, due to not being plugged in simultaneously. Our $METAREPO, however, will know all about where every file is, so that the "wanted" settings can be correctly resolved. Let's see what things look like now:
$ git annex whereis less
whereis mtree (2 copies)
8aed01c5-da30-46c0-8357-1e8a94f67ed6 -- local hub [here]
b46fc85c-c68e-4093-a66e-19dc99a7d5e7 -- test drive #1 [drive01]
ok
whereis testdata/[redacted] (1 copy)
b46fc85c-c68e-4093-a66e-19dc99a7d5e7 -- test drive #1 [drive01]
The following untrusted locations may also have copies:
9e48387e-b096-400a-8555-a3caf5b70a64 -- [source]
ok
If I scroll down a bit, I'll see the files past the 400MB mark that didn't make it onto drive01. Let's add another example drive! Walkthrough: Adding a second drive The steps for $DRIVE02 are the same as we did before, just with drive02 instead of drive01, so I'll omit listing it all a second time. Now look at this excerpt from whereis:
whereis testdata/[redacted] (1 copy)
b46fc85c-c68e-4093-a66e-19dc99a7d5e7 -- test drive #1 [drive01]
The following untrusted locations may also have copies:
9e48387e-b096-400a-8555-a3caf5b70a64 -- [source]
ok
whereis testdata/[redacted] (1 copy)
c4540343-e3b5-4148-af46-3f612adda506 -- test drive #2 [drive02]
The following untrusted locations may also have copies:
9e48387e-b096-400a-8555-a3caf5b70a64 -- [source]
ok
Look at that! Some files on drive01, some on drive02, some neither place. Perfect! Walkthrough: Updates So I've made some changes in the source directory: moved a file, added another, and deleted one. All of these were copied to drive01 above. How do we handle this? First, we update the metadata repo:
$ cd $METAREPO
$ git annex sync
$ git annex dropunused all
OK, this has scanned $SOURCEDIR and noted changes. Let's see what whereis says:
$ git annex whereis less
...
whereis testdata/cp (0 copies)
The following untrusted locations may also have copies:
9e48387e-b096-400a-8555-a3caf5b70a64 -- [source]
failed
whereis testdata/file01-unchanged (1 copy)
b46fc85c-c68e-4093-a66e-19dc99a7d5e7 -- test drive #1 [drive01]
The following untrusted locations may also have copies:
9e48387e-b096-400a-8555-a3caf5b70a64 -- [source]
ok
So this looks right. The file I added was a copy of /bin/cp. I moved another file to one named file01-unchanged. Notice that it realized this was a rename and that the data still exists on drive01. Well, let's update drive01.
$ cd $DRIVE01/$REPONAME
$ git annex sync --content
Looking at the testdata/ directory now, I see that file01-unchanged has been renamed, the deleted file is gone, but cp isn't yet here -- probably due to space issues; as it's new, it's undefined whether it or some other file would fill up free space. Let's work along a few more commands.
$ git annex get --auto
$ git annex drop --auto
$ git annex dropunused all
And now, let's make sure metarepo is updated with its state.
$ cd $METAREPO
$ git annex sync
We could do the same for drive02. This is how we would proceed with every update. Walkthrough: Restoration Now, we have bare files at reasonable locations in drive01 and drive02. But, to generate a consistent restore, we need to be able to actually do an export. Otherwise, we may have files with old names, duplicate files, etc. Let's assume that we lost our source and metadata repos and have to restore from scratch. We'll make a new $RESTOREDIR. We'll begin with drive01 since we used it most recently.
$ mv $METAREPO $METAREPO.disabled
$ mv $SOURCEDIR $SOURCEDIR.disabled
$ git clone $DRIVE01/$REPONAME $RESTOREDIR
$ cd $RESTOREDIR
$ git config annex.thin true
$ git annex init "restore"
$ git annex adjust --hide-missing --unlock
Now, we need to connect the drive01 and pull the files from it.
$ git remote add drive01 $DRIVE01/$REPONAME
$ git annex sync --content
Now, repeat with drive02:
$ git remote add drive02 $DRIVE02/$REPONAME
$ git annex sync --content
Now we've got all our content back! Here's what whereis looks like:
whereis testdata/file01-unchanged (3 copies)
3d663d0f-1a69-4943-8eb1-f4fe22dc4349 -- restore [here]
9e48387e-b096-400a-8555-a3caf5b70a64 -- source
b46fc85c-c68e-4093-a66e-19dc99a7d5e7 -- test drive #1 [origin]
ok
...
I was a little surprised that drive01 didn't seem to know what was on drive02. Perhaps that could have been remedied by adding more remotes there? I'm not entirely sure; I'd thought would have been able to do that automatically. Conclusions I think I have demonstrated two things: First, git-annex is indeed an extremely powerful tool. I have only scratched the surface here. The location tracking is a neat feature, and being able to just access the data as plain files if all else fails is nice for future users. Secondly, it is also a complex tool and difficult to get right for this purpose (I think much easier for some other purposes). For someone that doesn't live and breathe git-annex, it can be hard to get right. In fact, I'm not entirely sure I got it right here. Why didn't drive02 know what files were on drive01 and vice-versa? I don't know, and that reflects some kind of misunderstanding on my part about how metadata is synced; perhaps more care needs to be taken in restore, or done in a different order, than I proposed. I initially tried to do a restore by using git annex export to a directory special remote with exporttree=yes, but I couldn't ever get it to actually do anything, and I don't know why. These two cut against each other. On the one hand, the raw accessibility of the data to someone with no computer skills is unmatched. On the other hand, I'm not certain I have the skill to always prepare the discs properly, or to do a proper consistent restore.

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